RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 C14orf37Q86TY3 774 aa7.82□□□□□ -1.16
SCN1A-212ENST00000636194 FBLN2P98095 1184 aa7.82□□□□□ -1.16
SCN1A-212ENST00000636194 FGD1P98174 961 aa7.81□□□□□ -1.16
SCN1A-212ENST00000636194 NBR1Q14596 966 aa7.81□□□□□ -1.16
SCN1A-212ENST00000636194 PLPPR3Q6T4P5 718 aa7.8□□□□□ -1.16
SCN1A-212ENST00000636194 TMX4Q9H1E5 349 aaPredicted RBP7.8□□□□□ -1.16
SCN1A-212ENST00000636194 FBXO3Q9UK99 471 aa7.8□□□□□ -1.16
SCN1A-212ENST00000636194 FKBP8Q14318 412 aa7.79□□□□□ -1.16
SCN1A-212ENST00000636194 GOLGA6L1Q8N7Z2 621 aa7.79□□□□□ -1.16
SCN1A-212ENST00000636194 SETQ01105 290 aaPredicted RBP7.79□□□□□ -1.16
SCN1A-212ENST00000636194 CHMP4BQ9H444 224 aaKnown RBP7.78□□□□□ -1.16
SCN1A-212ENST00000636194 CHGAP10645 457 aaKnown RBP7.78□□□□□ -1.16
SCN1A-212ENST00000636194 CCDC34Q96HJ3 373 aa7.78□□□□□ -1.16
SCN1A-212ENST00000636194 TPRNQ4KMQ1 711 aa7.77□□□□□ -1.17
SCN1A-212ENST00000636194 NAP1L5Q96NT1 182 aaPredicted RBP7.77□□□□□ -1.17
SCN1A-212ENST00000636194 CCDC136Q96JN2 1154 aa7.77□□□□□ -1.17
SCN1A-212ENST00000636194 GOLGA6L4A6NEF3 574 aa7.77□□□□□ -1.17
SCN1A-212ENST00000636194 CEP89Q96ST8 783 aa7.76□□□□□ -1.17
SCN1A-212ENST00000636194 TAOK2Q9UL54 1235 aa7.76□□□□□ -1.17
SCN1A-212ENST00000636194 PLCB2Q00722 1185 aa7.76□□□□□ -1.17
SCN1A-212ENST00000636194 GNL2Q13823 731 aaKnown RBP7.75□□□□□ -1.17
SCN1A-212ENST00000636194 ISY1Q9ULR0 285 aaKnown RBP7.74□□□□□ -1.17
SCN1A-212ENST00000636194 APPP05067 770 aa7.74□□□□□ -1.17
SCN1A-212ENST00000636194 TMC1Q8TDI8 760 aa7.74□□□□□ -1.17
SCN1A-212ENST00000636194 KCNJ4P48050 445 aa7.74□□□□□ -1.17
SCN1A-212ENST00000636194 RRP12Q5JTH9 1297 aaKnown RBP7.73□□□□□ -1.17
SCN1A-212ENST00000636194 CNKSR2Q8WXI2 1034 aa7.73□□□□□ -1.17
SCN1A-212ENST00000636194 CFAP44Q96MT7 982 aa7.72□□□□□ -1.17
SCN1A-212ENST00000636194 DRC7Q8IY82 874 aa7.72□□□□□ -1.17
SCN1A-212ENST00000636194 ZBTB7CA1YPR0 619 aa7.72□□□□□ -1.17
SCN1A-212ENST00000636194 PDE4CQ08493 712 aa7.72□□□□□ -1.17
SCN1A-212ENST00000636194 TONSLQ96HA7 1378 aa7.72□□□□□ -1.17
SCN1A-212ENST00000636194 PPP1R15AO75807 674 aaPredicted RBP7.72□□□□□ -1.17
SCN1A-212ENST00000636194 FTSJ3Q8IY81 847 aaKnown RBP7.71□□□□□ -1.17
SCN1A-212ENST00000636194 GTF3C3Q9Y5Q9 886 aa7.71□□□□□ -1.17
SCN1A-212ENST00000636194 NAP1L2Q9ULW6 460 aaPredicted RBP7.7□□□□□ -1.18
SCN1A-212ENST00000636194 MSNP26038 577 aaKnown RBP7.7□□□□□ -1.18
SCN1A-212ENST00000636194 TPM4P67936 248 aa7.7□□□□□ -1.18
SCN1A-212ENST00000636194 OS9Q13438 667 aaPredicted RBP7.7□□□□□ -1.18
SCN1A-212ENST00000636194 MCCP23508 829 aa7.69□□□□□ -1.18
SCN1A-212ENST00000636194 ZNF777Q9ULD5 760 aaPredicted RBP7.69□□□□□ -1.18
SCN1A-212ENST00000636194 CFAP53Q96M91 514 aa7.68□□□□□ -1.18
SCN1A-212ENST00000636194 HTATSF1O43719 755 aaKnown RBP7.68□□□□□ -1.18
SCN1A-212ENST00000636194 ANO8Q9HCE9 1232 aaPredicted RBP7.68□□□□□ -1.18
SCN1A-212ENST00000636194 ACIN1Q9UKV3 1341 aaKnown RBP7.67□□□□□ -1.18
SCN1A-212ENST00000636194 STK11IPQ8N1F8 1099 aa7.67□□□□□ -1.18
SCN1A-212ENST00000636194 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.67□□□□□ -1.18
SCN1A-212ENST00000636194 PTMSP20962 102 aa7.66□□□□□ -1.18
SCN1A-212ENST00000636194 MS4A1P11836 297 aa7.66□□□□□ -1.18
SCN1A-212ENST00000636194 HNRNPUQ00839 825 aaKnown RBP eCLIP7.66□□□□□ -1.18
SCN1A-212ENST00000636194 PATL2C9JE40 543 aaKnown RBP7.65□□□□□ -1.18
SCN1A-212ENST00000636194 PPP4R2Q9NY27 417 aa7.65□□□□□ -1.18
SCN1A-212ENST00000636194 PLEKHG5O94827 1062 aa7.64□□□□□ -1.19
SCN1A-212ENST00000636194 HSP90AB1P08238 724 aaKnown RBP7.64□□□□□ -1.19
SCN1A-212ENST00000636194 CDCA8Q53HL2 280 aa7.64□□□□□ -1.19
SCN1A-212ENST00000636194 SEPT11Q9NVA2 429 aaKnown RBP7.64□□□□□ -1.19
SCN1A-212ENST00000636194 CCDC70Q6NSX1 233 aa7.63□□□□□ -1.19
SCN1A-212ENST00000636194 HMMRO75330 724 aa7.63□□□□□ -1.19
SCN1A-212ENST00000636194 TCEAL9Q9UHQ7 104 aa7.63□□□□□ -1.19
SCN1A-212ENST00000636194 SYAP1Q96A49 352 aaPredicted RBP7.62□□□□□ -1.19
SCN1A-212ENST00000636194 MEX3CQ5U5Q3 659 aaKnown RBP7.62□□□□□ -1.19
SCN1A-212ENST00000636194 TPM3P06753 285 aa7.61□□□□□ -1.19
SCN1A-212ENST00000636194 FAM9BQ8IZU0 186 aa7.61□□□□□ -1.19
SCN1A-212ENST00000636194 G3V3G9 751 aa7.61□□□□□ -1.19
SCN1A-212ENST00000636194 PPM1GO15355 546 aaPredicted RBP7.61□□□□□ -1.19
SCN1A-212ENST00000636194 TSR1Q2NL82 804 aaKnown RBP7.61□□□□□ -1.19
SCN1A-212ENST00000636194 DCAF8Q5TAQ9 597 aa7.61□□□□□ -1.19
SCN1A-212ENST00000636194 CHMP4AQ9BY43 222 aa7.6□□□□□ -1.19
SCN1A-212ENST00000636194 TAF7LQ5H9L4 462 aa7.6□□□□□ -1.19
SCN1A-212ENST00000636194 DCAF8L1A6NGE4 600 aa7.6□□□□□ -1.19
SCN1A-212ENST00000636194 KIAA1211Q6ZU35 1233 aa7.6□□□□□ -1.19
SCN1A-212ENST00000636194 MAPK8IP3Q9UPT6 1336 aa7.6□□□□□ -1.19
SCN1A-212ENST00000636194 SALL2Q9Y467 1007 aaPredicted RBP7.59□□□□□ -1.19
SCN1A-212ENST00000636194 HSP90B1P14625 803 aaKnown RBP7.59□□□□□ -1.2
SCN1A-212ENST00000636194 RDXP35241 583 aaKnown RBP7.59□□□□□ -1.2
SCN1A-212ENST00000636194 ARID4BQ4LE39 1312 aaPredicted RBP7.58□□□□□ -1.2
SCN1A-212ENST00000636194 RASSF8Q8NHQ8 419 aa7.58□□□□□ -1.2
SCN1A-212ENST00000636194 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.58□□□□□ -1.2
SCN1A-212ENST00000636194 TPM2P07951 284 aa7.58□□□□□ -1.2
SCN1A-212ENST00000636194 CSPP1Q1MSJ5 1256 aa7.58□□□□□ -1.2
SCN1A-212ENST00000636194 HSCBQ8IWL3 235 aa7.58□□□□□ -1.2
SCN1A-212ENST00000636194 GPS2Q13227 327 aa7.58□□□□□ -1.2
SCN1A-212ENST00000636194 NUDCQ9Y266 331 aa7.57□□□□□ -1.2
SCN1A-212ENST00000636194 GPATCH3Q96I76 525 aa7.57□□□□□ -1.2
SCN1A-212ENST00000636194 CSRNP3Q8WYN3 585 aa7.57□□□□□ -1.2
SCN1A-212ENST00000636194 AK7Q96M32 723 aa7.56□□□□□ -1.2
SCN1A-212ENST00000636194 ZRSR2Q15696 482 aaKnown RBP7.56□□□□□ -1.2
SCN1A-212ENST00000636194 GON4LQ3T8J9 2241 aa7.56□□□□□ -1.2
SCN1A-212ENST00000636194 PHF14O94880 888 aa7.56□□□□□ -1.2
SCN1A-212ENST00000636194 VPS53Q5VIR6 699 aa7.56□□□□□ -1.2
SCN1A-212ENST00000636194 WWC1Q8IX03 1113 aa7.56□□□□□ -1.2
SCN1A-212ENST00000636194 LMOD2Q6P5Q4 547 aa7.55□□□□□ -1.2
SCN1A-212ENST00000636194 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.55□□□□□ -1.21e-6■■■□□ 16.7
SCN1A-212ENST00000636194 TSPY4P0CV99 314 aa7.55□□□□□ -1.2
SCN1A-212ENST00000636194 TSPY10P0CW01 314 aa7.55□□□□□ -1.2
SCN1A-212ENST00000636194 TPM1P09493 284 aa7.55□□□□□ -1.2
SCN1A-212ENST00000636194 HDAC5Q9UQL6 1122 aa7.55□□□□□ -1.2
SCN1A-212ENST00000636194 KIF3AQ9Y496 699 aa7.55□□□□□ -1.2
SCN1A-212ENST00000636194 KNSTRNQ9Y448 316 aa7.54□□□□□ -1.2
SCN1A-212ENST00000636194 CDR1P51861 262 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms