RNA–Protein interactions for RNA: ENST00000635590.1

SMARCA2-243, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2, humanhuman

TSL 3

Gene SMARCA2, Length 1,843 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA2-243ENST00000635590 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.18□□□□□ -0.3
SMARCA2-243ENST00000635590 NPM2Q86SE8 214 aaKnown RBP13.14□□□□□ -0.31
SMARCA2-243ENST00000635590 P3H3Q8IVL6 736 aa13.14□□□□□ -0.31
SMARCA2-243ENST00000635590 TRHP20396 242 aaPredicted RBP13.1□□□□□ -0.31
SMARCA2-243ENST00000635590 NEUROD2Q15784 382 aa13.1□□□□□ -0.31
SMARCA2-243ENST00000635590 HRCP23327 699 aa13.07□□□□□ -0.32
SMARCA2-243ENST00000635590 ZBTB47Q9UFB7 747 aaPredicted RBP13.04□□□□□ -0.32
SMARCA2-243ENST00000635590 KCNV2Q8TDN2 545 aa13.02□□□□□ -0.33
SMARCA2-243ENST00000635590 POTEDQ86YR6 584 aa13.01□□□□□ -0.33
SMARCA2-243ENST00000635590 ZNF692Q9BU19 519 aaPredicted RBP12.99□□□□□ -0.33
SMARCA2-243ENST00000635590 RIOK3O14730 519 aaKnown RBP12.99□□□□□ -0.33
SMARCA2-243ENST00000635590 SPINK5Q9NQ38 1064 aaPredicted RBP12.99□□□□□ -0.33
SMARCA2-243ENST00000635590 STK25O00506 426 aa12.98□□□□□ -0.33
SMARCA2-243ENST00000635590 ZC3H15Q8WU90 426 aaKnown RBP12.98□□□□□ -0.33
SMARCA2-243ENST00000635590 ZBTB12Q9Y330 459 aaPredicted RBP12.98□□□□□ -0.33
SMARCA2-243ENST00000635590 SLC24A3Q9HC58 644 aa12.96□□□□□ -0.33
SMARCA2-243ENST00000635590 PLEKHG5O94827 1062 aa12.95□□□□□ -0.34
SMARCA2-243ENST00000635590 ZMYND15Q9H091 742 aa12.93□□□□□ -0.34
SMARCA2-243ENST00000635590 GSE1Q14687 1217 aa12.92□□□□□ -0.34
SMARCA2-243ENST00000635590 RYDENQ9NUL5 291 aaKnown RBP12.9□□□□□ -0.34
SMARCA2-243ENST00000635590 RSPH6AQ9H0K4 717 aa12.89□□□□□ -0.35
SMARCA2-243ENST00000635590 PABPN1Q86U42 306 aaKnown RBP eCLIP12.88□□□□□ -0.35
SMARCA2-243ENST00000635590 SSUH2Q9Y2M2 353 aa12.88□□□□□ -0.35
SMARCA2-243ENST00000635590 WDR70Q9NW82 654 aa12.88□□□□□ -0.35
SMARCA2-243ENST00000635590 VGFO15240 615 aaPredicted RBP12.86□□□□□ -0.35
SMARCA2-243ENST00000635590 CADPS2Q86UW7 1296 aa12.82□□□□□ -0.36
SMARCA2-243ENST00000635590 ARID3AQ99856 593 aa12.81□□□□□ -0.36
SMARCA2-243ENST00000635590 STK24Q9Y6E0 443 aa12.81□□□□□ -0.36
SMARCA2-243ENST00000635590 CAPN15O75808 1086 aa12.8□□□□□ -0.36
SMARCA2-243ENST00000635590 BCL11BQ9C0K0 894 aaPredicted RBP12.8□□□□□ -0.36
SMARCA2-243ENST00000635590 SPDYE2BA6NHP3 402 aa12.79□□□□□ -0.36
SMARCA2-243ENST00000635590 SPDYE6P0CI01 402 aa12.79□□□□□ -0.36
SMARCA2-243ENST00000635590 SPDYE2Q495Y8 402 aa12.79□□□□□ -0.36
SMARCA2-243ENST00000635590 NUBP1P53384 320 aa12.77□□□□□ -0.37
SMARCA2-243ENST00000635590 SGIP1Q9BQI5 828 aa12.76□□□□□ -0.37
SMARCA2-243ENST00000635590 C1orf115Q9H7X2 142 aa12.76□□□□□ -0.37
SMARCA2-243ENST00000635590 DCAF8Q5TAQ9 597 aa12.75□□□□□ -0.37
SMARCA2-243ENST00000635590 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.74□□□□□ -0.37
SMARCA2-243ENST00000635590 ZFP91Q96JP5 570 aaPredicted RBP12.74□□□□□ -0.37
SMARCA2-243ENST00000635590 ZMYND10O75800 440 aa12.74□□□□□ -0.37
SMARCA2-243ENST00000635590 ABCB7O75027 752 aa12.73□□□□□ -0.37
SMARCA2-243ENST00000635590 OSCARQ8IYS5 282 aa12.72□□□□□ -0.37
SMARCA2-243ENST00000635590 ARHGEF1Q92888 912 aaKnown RBP12.71□□□□□ -0.38
SMARCA2-243ENST00000635590 TESPA1A2RU30 521 aaPredicted RBP12.7□□□□□ -0.38
SMARCA2-243ENST00000635590 SEMA3EO15041 775 aa12.69□□□□□ -0.38
SMARCA2-243ENST00000635590 CCDC9Q9Y3X0 531 aaKnown RBP12.68□□□□□ -0.38
SMARCA2-243ENST00000635590 GPBP1L1Q9HC44 474 aaPredicted RBP12.66□□□□□ -0.38
SMARCA2-243ENST00000635590 IL27Q8NEV9 243 aa12.65□□□□□ -0.38
SMARCA2-243ENST00000635590 ZBTB7CA1YPR0 619 aa12.63□□□□□ -0.39
SMARCA2-243ENST00000635590 CHRM1P11229 460 aaPredicted RBP12.62□□□□□ -0.39
SMARCA2-243ENST00000635590 ARID3CA6NKF2 412 aa12.6□□□□□ -0.39
SMARCA2-243ENST00000635590 PDIA4P13667 645 aaKnown RBP12.6□□□□□ -0.39
SMARCA2-243ENST00000635590 BARGINQ6ZT62 677 aa12.6□□□□□ -0.39
SMARCA2-243ENST00000635590 FAM212AQ96EL1 285 aa12.58□□□□□ -0.4
SMARCA2-243ENST00000635590 APBB1O00213 710 aa12.57□□□□□ -0.4
SMARCA2-243ENST00000635590 E2F4Q16254 413 aa12.56□□□□□ -0.4
SMARCA2-243ENST00000635590 NECTIN2Q92692 538 aa12.56□□□□□ -0.4
SMARCA2-243ENST00000635590 MKRN3Q13064 507 aaKnown RBP12.55□□□□□ -0.4
SMARCA2-243ENST00000635590 AK7Q96M32 723 aa12.55□□□□□ -0.4
SMARCA2-243ENST00000635590 KDM4CQ9H3R0 1056 aa12.54□□□□□ -0.4
SMARCA2-243ENST00000635590 ABCC9O60706 1549 aa12.51□□□□□ -0.41
SMARCA2-243ENST00000635590 SMYD5Q6GMV2 418 aa12.49□□□□□ -0.41
SMARCA2-243ENST00000635590 PYGBP11216 843 aa12.44□□□□□ -0.42
SMARCA2-243ENST00000635590 RASEFQ8IZ41 740 aa12.41□□□□□ -0.42
SMARCA2-243ENST00000635590 KRI1Q8N9T8 703 aaKnown RBP12.41□□□□□ -0.42
SMARCA2-243ENST00000635590 PDE4DQ08499 809 aa12.39□□□□□ -0.43
SMARCA2-243ENST00000635590 TRIM66O15016 1216 aa12.39□□□□□ -0.43
SMARCA2-243ENST00000635590 CCDC82Q8N4S0 544 aa12.39□□□□□ -0.43
SMARCA2-243ENST00000635590 RNF39Q9H2S5 420 aa12.39□□□□□ -0.43
SMARCA2-243ENST00000635590 MFRPQ9BY79 579 aa12.37□□□□□ -0.43
SMARCA2-243ENST00000635590 MNX1P50219 401 aaPredicted RBP12.36□□□□□ -0.43
SMARCA2-243ENST00000635590 FLIIQ13045 1269 aa12.36□□□□□ -0.43
SMARCA2-243ENST00000635590 KCTD17Q8N5Z5 321 aa12.34□□□□□ -0.43
SMARCA2-243ENST00000635590 FAM117AQ9C073 453 aa12.34□□□□□ -0.43
SMARCA2-243ENST00000635590 RBM26Q5T8P6 1007 aaKnown RBP12.34□□□□□ -0.43
SMARCA2-243ENST00000635590 GPIHBP1Q8IV16 184 aa12.34□□□□□ -0.43
SMARCA2-243ENST00000635590 LOC105371045A0A1W2PR82 267 aa12.33□□□□□ -0.44
SMARCA2-243ENST00000635590 ZNF316A6NFI3 1004 aaPredicted RBP12.33□□□□□ -0.44
SMARCA2-243ENST00000635590 PPP1R37O75864 691 aa12.32□□□□□ -0.44
SMARCA2-243ENST00000635590 DSG3P32926 999 aa12.28□□□□□ -0.44
SMARCA2-243ENST00000635590 CREBZFQ9NS37 354 aa12.28□□□□□ -0.44
SMARCA2-243ENST00000635590 ARIH1Q9Y4X5 557 aaPredicted RBP12.28□□□□□ -0.44
SMARCA2-243ENST00000635590 TRAK2O60296 914 aa12.27□□□□□ -0.44
SMARCA2-243ENST00000635590 PLEKHG3A1L390 1219 aa12.27□□□□□ -0.45
SMARCA2-243ENST00000635590 ONECUT3O60422 494 aaPredicted RBP12.27□□□□□ -0.45
SMARCA2-243ENST00000635590 C1QBPQ07021 282 aaKnown RBP12.27□□□□□ -0.45
SMARCA2-243ENST00000635590 A6NJR5 290 aa12.26□□□□□ -0.45
SMARCA2-243ENST00000635590 TRAIPQ9BWF2 469 aa12.26□□□□□ -0.45
SMARCA2-243ENST00000635590 RAD21O60216 631 aa12.25□□□□□ -0.45
SMARCA2-243ENST00000635590 CLUAP1Q96AJ1 413 aa12.25□□□□□ -0.45
SMARCA2-243ENST00000635590 NCKAP5LQ9HCH0 1330 aa12.25□□□□□ -0.45
SMARCA2-243ENST00000635590 MLLT3P42568 568 aaPredicted RBP12.23□□□□□ -0.45
SMARCA2-243ENST00000635590 PDAP1Q13442 181 aaKnown RBP12.23□□□□□ -0.45
SMARCA2-243ENST00000635590 CCDC180Q9P1Z9 1646 aa12.22□□□□□ -0.45
SMARCA2-243ENST00000635590 ZNF467Q7Z7K2 595 aaPredicted RBP12.22□□□□□ -0.45
SMARCA2-243ENST00000635590 DDRGK1Q96HY6 314 aa12.21□□□□□ -0.45
SMARCA2-243ENST00000635590 LARP6Q9BRS8 491 aaKnown RBP12.21□□□□□ -0.45
SMARCA2-243ENST00000635590 RGS22Q8NE09 1264 aa12.21□□□□□ -0.46
SMARCA2-243ENST00000635590 MFSD10Q14728 455 aa12.18□□□□□ -0.46
SMARCA2-243ENST00000635590 AEBP1Q8IUX7 1158 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms