RNA–Protein interactions for RNA: ENST00000628915.2

R3HDM1-220, Transcript of R3H domain containing 1, humanhuman

TSL 5 BASIC

Gene R3HDM1, Length 4,325 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HDM1-220ENST00000628915 HNRNPUL2Q1KMD3 747 aaKnown RBP5.63□□□□□ -1.51
R3HDM1-220ENST00000628915 YTHDC1Q96MU7 727 aaKnown RBP5.62□□□□□ -1.51
R3HDM1-220ENST00000628915 NAP1L5Q96NT1 182 aaPredicted RBP5.62□□□□□ -1.51
R3HDM1-220ENST00000628915 TRIM26Q12899 539 aaPredicted RBP5.61□□□□□ -1.51
R3HDM1-220ENST00000628915 ABCC9O60706 1549 aa5.6□□□□□ -1.51
R3HDM1-220ENST00000628915 ZBTB22O15209 634 aa5.59□□□□□ -1.51
R3HDM1-220ENST00000628915 HMGB1P09429 215 aaKnown RBP5.59□□□□□ -1.51
R3HDM1-220ENST00000628915 PLCB2Q00722 1185 aa5.58□□□□□ -1.52
R3HDM1-220ENST00000628915 PRDM2Q13029 1718 aa5.58□□□□□ -1.52
R3HDM1-220ENST00000628915 HSP90B1P14625 803 aaKnown RBP5.58□□□□□ -1.52
R3HDM1-220ENST00000628915 HMGXB3Q12766 1538 aa5.58□□□□□ -1.52
R3HDM1-220ENST00000628915 NEUROD1Q13562 356 aa5.57□□□□□ -1.52
R3HDM1-220ENST00000628915 LOC105371045A0A1W2PR82 267 aa5.57□□□□□ -1.52
R3HDM1-220ENST00000628915 MYT1LQ9UL68 1186 aa5.57□□□□□ -1.52
R3HDM1-220ENST00000628915 TMEM132AQ24JP5 1023 aa5.56□□□□□ -1.52
R3HDM1-220ENST00000628915 U3KPZ7 1027 aaPredicted RBP5.56□□□□□ -1.52
R3HDM1-220ENST00000628915 SAMD1Q6SPF0 538 aaPredicted RBP5.56□□□□□ -1.52
R3HDM1-220ENST00000628915 CFAP44Q96MT7 982 aa5.56□□□□□ -1.52
R3HDM1-220ENST00000628915 PAXIP1Q6ZW49 1069 aaPredicted RBP5.56□□□□□ -1.52
R3HDM1-220ENST00000628915 SLC4A2P04920 1241 aa5.55□□□□□ -1.52
R3HDM1-220ENST00000628915 FGD1P98174 961 aa5.55□□□□□ -1.52
R3HDM1-220ENST00000628915 CCDC9Q9Y3X0 531 aaKnown RBP5.55□□□□□ -1.52
R3HDM1-220ENST00000628915 MYCNP04198 464 aaPredicted RBP5.54□□□□□ -1.52
R3HDM1-220ENST00000628915 DEKP35659 375 aaKnown RBP5.53□□□□□ -1.52
R3HDM1-220ENST00000628915 RTL5Q5HYW3 569 aaPredicted RBP5.53□□□□□ -1.52
R3HDM1-220ENST00000628915 FOXD4L1Q9NU39 408 aa5.52□□□□□ -1.53
R3HDM1-220ENST00000628915 ERICH6BQ5W0A0 696 aa5.52□□□□□ -1.53
R3HDM1-220ENST00000628915 ARID3AQ99856 593 aa5.52□□□□□ -1.53
R3HDM1-220ENST00000628915 EIF4G1Q04637 1599 aaKnown RBP5.52□□□□□ -1.53
R3HDM1-220ENST00000628915 UBTFP17480 764 aaKnown RBP5.52□□□□□ -1.53
R3HDM1-220ENST00000628915 IRX6P78412 446 aaPredicted RBP5.52□□□□□ -1.53
R3HDM1-220ENST00000628915 ZBTB4Q9P1Z0 1013 aaPredicted RBP5.51□□□□□ -1.53
R3HDM1-220ENST00000628915 CAPN15O75808 1086 aa5.5□□□□□ -1.53
R3HDM1-220ENST00000628915 SALL2Q9Y467 1007 aaPredicted RBP5.5□□□□□ -1.53
R3HDM1-220ENST00000628915 WDR97A6NE52 1622 aa5.49□□□□□ -1.53
R3HDM1-220ENST00000628915 ZNF219Q9P2Y4 722 aaPredicted RBP5.49□□□□□ -1.53
R3HDM1-220ENST00000628915 SCRIBQ14160 1630 aa5.48□□□□□ -1.53
R3HDM1-220ENST00000628915 VSIG10Q8N0Z9 540 aa5.48□□□□□ -1.53
R3HDM1-220ENST00000628915 ZNF526Q8TF50 670 aaPredicted RBP5.47□□□□□ -1.53
R3HDM1-220ENST00000628915 CC2D2AQ9P2K1 1620 aa5.46□□□□□ -1.53
R3HDM1-220ENST00000628915 ARID4BQ4LE39 1312 aaPredicted RBP5.46□□□□□ -1.54
R3HDM1-220ENST00000628915 PTMSP20962 102 aa5.46□□□□□ -1.54
R3HDM1-220ENST00000628915 CCER1Q8TC90 406 aaPredicted RBP5.45□□□□□ -1.54
R3HDM1-220ENST00000628915 RBM10P98175 930 aaKnown RBP5.45□□□□□ -1.54
R3HDM1-220ENST00000628915 BCCIPQ9P287 314 aaKnown RBP eCLIP5.45□□□□□ -1.54
R3HDM1-220ENST00000628915 DIEXFQ68CQ4 756 aaKnown RBP5.44□□□□□ -1.54
R3HDM1-220ENST00000628915 NCLP19338 710 aaKnown RBP5.44□□□□□ -1.54
R3HDM1-220ENST00000628915 NCAPD3P42695 1498 aa5.43□□□□□ -1.54
R3HDM1-220ENST00000628915 TRHP20396 242 aaPredicted RBP5.42□□□□□ -1.54
R3HDM1-220ENST00000628915 AAMPQ13685 434 aa5.42□□□□□ -1.54
R3HDM1-220ENST00000628915 CUX2O14529 1486 aa5.42□□□□□ -1.54
R3HDM1-220ENST00000628915 SMARCA4P51532 1647 aa5.42□□□□□ -1.54
R3HDM1-220ENST00000628915 SPINK5Q9NQ38 1064 aaPredicted RBP5.41□□□□□ -1.54
R3HDM1-220ENST00000628915 LAMC3Q9Y6N6 1575 aa5.4□□□□□ -1.54
R3HDM1-220ENST00000628915 ATXN8OSP0DMR3 200 aa5.4□□□□□ -1.54
R3HDM1-220ENST00000628915 ZMYND15Q9H091 742 aa5.4□□□□□ -1.55
R3HDM1-220ENST00000628915 PSMD1Q99460 953 aa5.39□□□□□ -1.55
R3HDM1-220ENST00000628915 NBR1Q14596 966 aa5.39□□□□□ -1.55
R3HDM1-220ENST00000628915 ZBTB7CA1YPR0 619 aa5.39□□□□□ -1.55
R3HDM1-220ENST00000628915 THOC2Q8NI27 1593 aaKnown RBP5.38□□□□□ -1.55
R3HDM1-220ENST00000628915 BAZ1AQ9NRL2 1556 aaPredicted RBP5.38□□□□□ -1.55
R3HDM1-220ENST00000628915 DSG3P32926 999 aa5.38□□□□□ -1.55
R3HDM1-220ENST00000628915 BAZ1BQ9UIG0 1483 aaKnown RBP5.37□□□□□ -1.55
R3HDM1-220ENST00000628915 IGSF3O75054 1194 aa5.37□□□□□ -1.55
R3HDM1-220ENST00000628915 ZNF592Q92610 1267 aa5.37□□□□□ -1.55
R3HDM1-220ENST00000628915 CNGB1Q14028 1251 aaPredicted RBP5.37□□□□□ -1.55
R3HDM1-220ENST00000628915 PRDM10Q9NQV6 1147 aa5.36□□□□□ -1.55
R3HDM1-220ENST00000628915 NAP1L2Q9ULW6 460 aaPredicted RBP5.36□□□□□ -1.55
R3HDM1-220ENST00000628915 GTF3C5Q9Y5Q8 519 aaPredicted RBP5.36□□□□□ -1.55
R3HDM1-220ENST00000628915 RSPH4AQ5TD94 716 aa5.36□□□□□ -1.55
R3HDM1-220ENST00000628915 USP35Q9P2H5 1018 aa5.35□□□□□ -1.55
R3HDM1-220ENST00000628915 CLSTN1O94985 981 aa5.35□□□□□ -1.55
R3HDM1-220ENST00000628915 PATL2C9JE40 543 aaKnown RBP5.35□□□□□ -1.55
R3HDM1-220ENST00000628915 FKBP8Q14318 412 aa5.35□□□□□ -1.55
R3HDM1-220ENST00000628915 WWC1Q8IX03 1113 aa5.34□□□□□ -1.55
R3HDM1-220ENST00000628915 ZBTB12Q9Y330 459 aaPredicted RBP5.34□□□□□ -1.55
R3HDM1-220ENST00000628915 PLCD4Q9BRC7 762 aa5.34□□□□□ -1.55
R3HDM1-220ENST00000628915 PPM1GO15355 546 aaPredicted RBP5.34□□□□□ -1.56
R3HDM1-220ENST00000628915 CANXP27824 592 aaKnown RBP5.33□□□□□ -1.56
R3HDM1-220ENST00000628915 RSPH6AQ9H0K4 717 aa5.33□□□□□ -1.56
R3HDM1-220ENST00000628915 CNPY4Q8N129 248 aa5.32□□□□□ -1.56
R3HDM1-220ENST00000628915 TSHZ2Q9NRE2 1034 aa5.32□□□□□ -1.56
R3HDM1-220ENST00000628915 ABCB7O75027 752 aa5.32□□□□□ -1.56
R3HDM1-220ENST00000628915 PTMAP06454 111 aaKnown RBP5.32□□□□□ -1.56
R3HDM1-220ENST00000628915 FBLN2P98095 1184 aa5.31□□□□□ -1.56
R3HDM1-220ENST00000628915 TICAM2Q86XR7 235 aa5.31□□□□□ -1.56
R3HDM1-220ENST00000628915 TRIM41Q8WV44 630 aa5.31□□□□□ -1.56
R3HDM1-220ENST00000628915 DNAJC5Q9H3Z4 198 aa5.31□□□□□ -1.56
R3HDM1-220ENST00000628915 WDR62O43379 1518 aa5.31□□□□□ -1.56
R3HDM1-220ENST00000628915 BBXQ8WY36 941 aaPredicted RBP5.31□□□□□ -1.56
R3HDM1-220ENST00000628915 ZFP91Q96JP5 570 aaPredicted RBP5.3□□□□□ -1.56
R3HDM1-220ENST00000628915 CHMP4BQ9H444 224 aaKnown RBP5.3□□□□□ -1.56
R3HDM1-220ENST00000628915 ZNF316A6NFI3 1004 aaPredicted RBP5.3□□□□□ -1.56
R3HDM1-220ENST00000628915 OS9Q13438 667 aaPredicted RBP5.29□□□□□ -1.56
R3HDM1-220ENST00000628915 BRPF3Q9ULD4 1205 aa5.29□□□□□ -1.56
R3HDM1-220ENST00000628915 APPP05067 770 aa5.29□□□□□ -1.56
R3HDM1-220ENST00000628915 POLA2Q14181 598 aa5.29□□□□□ -1.56
R3HDM1-220ENST00000628915 SUPT16HQ9Y5B9 1047 aaKnown RBP5.29□□□□□ -1.56
R3HDM1-220ENST00000628915 RBM25P49756 843 aaKnown RBP5.27□□□□□ -1.57
R3HDM1-220ENST00000628915 RBM42Q9BTD8 480 aaKnown RBP5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms