RNA–Protein interactions for RNA: ENST00000622226.1

PDLIM2-220, Transcript of PDZ and LIM domain 2, humanhuman

Gene PDLIM2, Length 6,559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-220ENST00000622226 MIER1Q8N108 512 aa20.29■□□□□ 0.84
PDLIM2-220ENST00000622226 DDRGK1Q96HY6 314 aa20.29■□□□□ 0.84
PDLIM2-220ENST00000622226 ARID4BQ4LE39 1312 aaPredicted RBP20.29■□□□□ 0.84
PDLIM2-220ENST00000622226 SENP3-EIF4A1A0A087X0R7 540 aa20.29■□□□□ 0.84
PDLIM2-220ENST00000622226 BECN1Q14457 450 aa20.29■□□□□ 0.84
PDLIM2-220ENST00000622226 MRS2Q9HD23 443 aa20.26■□□□□ 0.83
PDLIM2-220ENST00000622226 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.25■□□□□ 0.83
PDLIM2-220ENST00000622226 TONSLQ96HA7 1378 aa20.25■□□□□ 0.83
PDLIM2-220ENST00000622226 GOLGA6L22H0YM25 854 aa20.24■□□□□ 0.83
PDLIM2-220ENST00000622226 HIRIP3Q9BW71 556 aaPredicted RBP20.23■□□□□ 0.83
PDLIM2-220ENST00000622226 C14orf37Q86TY3 774 aa20.23■□□□□ 0.83
PDLIM2-220ENST00000622226 PLCB2Q00722 1185 aa20.22■□□□□ 0.83
PDLIM2-220ENST00000622226 WDR43Q15061 677 aaKnown RBP eCLIP20.21■□□□□ 0.83
PDLIM2-220ENST00000622226 TULP1O00294 542 aaPredicted RBP20.21■□□□□ 0.83
PDLIM2-220ENST00000622226 MYH16Q9H6N6 1097 aa20.17■□□□□ 0.82
PDLIM2-220ENST00000622226 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.13■□□□□ 0.81
PDLIM2-220ENST00000622226 ZRSR1Q15695 479 aaKnown RBP20.13■□□□□ 0.81
PDLIM2-220ENST00000622226 ARID3AQ99856 593 aa20.13■□□□□ 0.81
PDLIM2-220ENST00000622226 TAOK2Q9UL54 1235 aa20.1■□□□□ 0.81
PDLIM2-220ENST00000622226 PPM1GO15355 546 aaPredicted RBP20.1■□□□□ 0.81
PDLIM2-220ENST00000622226 HAP1P54257 671 aaPredicted RBP20.1■□□□□ 0.81
PDLIM2-220ENST00000622226 KCNH8Q96L42 1107 aa20.08■□□□□ 0.81
PDLIM2-220ENST00000622226 DEKP35659 375 aaKnown RBP20.06■□□□□ 0.8
PDLIM2-220ENST00000622226 NOP58Q9Y2X3 529 aaKnown RBP20.06■□□□□ 0.8
PDLIM2-220ENST00000622226 SUPT16HQ9Y5B9 1047 aaKnown RBP20.05■□□□□ 0.8
PDLIM2-220ENST00000622226 KDM2AQ9Y2K7 1162 aa20.02■□□□□ 0.79
PDLIM2-220ENST00000622226 RGS3P49796 1198 aa19.97■□□□□ 0.79
PDLIM2-220ENST00000622226 CHMP7Q8WUX9 453 aaPredicted RBP19.96■□□□□ 0.79
PDLIM2-220ENST00000622226 CHIC2Q9UKJ5 165 aa19.94■□□□□ 0.78
PDLIM2-220ENST00000622226 MSNP26038 577 aaKnown RBP19.91■□□□□ 0.78
PDLIM2-220ENST00000622226 LMOD2Q6P5Q4 547 aa19.9■□□□□ 0.78
PDLIM2-220ENST00000622226 SPRYD3Q8NCJ5 442 aa19.9■□□□□ 0.78
PDLIM2-220ENST00000622226 HSP90AB1P08238 724 aaKnown RBP19.88■□□□□ 0.77
PDLIM2-220ENST00000622226 CHAF1AQ13111 956 aaPredicted RBP19.88■□□□□ 0.77
PDLIM2-220ENST00000622226 PPP1R15AO75807 674 aaPredicted RBP19.88■□□□□ 0.77
PDLIM2-220ENST00000622226 NCBP3Q53F19 620 aaKnown RBP19.86■□□□□ 0.77
PDLIM2-220ENST00000622226 CASC1Q6TDU7 716 aa19.86■□□□□ 0.77
PDLIM2-220ENST00000622226 B4GALNT3Q6L9W6 998 aa19.84■□□□□ 0.77
PDLIM2-220ENST00000622226 GOLGA6L6A8MZA4 724 aa19.84■□□□□ 0.77
PDLIM2-220ENST00000622226 TNNT3P45378 269 aaPredicted RBP19.81■□□□□ 0.76
PDLIM2-220ENST00000622226 MLECQ14165 292 aa19.81■□□□□ 0.76
PDLIM2-220ENST00000622226 FTSJ3Q8IY81 847 aaKnown RBP19.81■□□□□ 0.76
PDLIM2-220ENST00000622226 CSRNP3Q8WYN3 585 aa19.81■□□□□ 0.76
PDLIM2-220ENST00000622226 SCRIBQ14160 1630 aa19.8■□□□□ 0.76
PDLIM2-220ENST00000622226 DRC7Q8IY82 874 aa19.79■□□□□ 0.76
PDLIM2-220ENST00000622226 PPP4R2Q9NY27 417 aa19.78■□□□□ 0.76
PDLIM2-220ENST00000622226 NEUROD2Q15784 382 aa19.77■□□□□ 0.76
PDLIM2-220ENST00000622226 NAP1L2Q9ULW6 460 aaPredicted RBP19.77■□□□□ 0.76
PDLIM2-220ENST00000622226 L1TD1Q5T7N2 865 aaKnown RBP19.76■□□□□ 0.75
PDLIM2-220ENST00000622226 NRDCO43847 1150 aa19.75■□□□□ 0.75
PDLIM2-220ENST00000622226 FRAT1Q92837 279 aaPredicted RBP19.74■□□□□ 0.75
PDLIM2-220ENST00000622226 EIF4G2P78344 907 aaKnown RBP eCLIP19.74■□□□□ 0.75
PDLIM2-220ENST00000622226 GZF1Q9H116 711 aaPredicted RBP19.74■□□□□ 0.75
PDLIM2-220ENST00000622226 NPHP1O15259 732 aa19.73■□□□□ 0.75
PDLIM2-220ENST00000622226 FGD1P98174 961 aa19.71■□□□□ 0.75
PDLIM2-220ENST00000622226 GOLGA6L4A6NEF3 574 aa19.7■□□□□ 0.74
PDLIM2-220ENST00000622226 RBM19Q9Y4C8 960 aaKnown RBP19.7■□□□□ 0.74
PDLIM2-220ENST00000622226 AEBP2Q6ZN18 517 aaPredicted RBP19.69■□□□□ 0.74
PDLIM2-220ENST00000622226 PNNQ9H307 717 aaKnown RBP19.68■□□□□ 0.74
PDLIM2-220ENST00000622226 HSCBQ8IWL3 235 aa19.67■□□□□ 0.74
PDLIM2-220ENST00000622226 KCNJ4P48050 445 aa19.65■□□□□ 0.74
PDLIM2-220ENST00000622226 ERCC6Q03468 1493 aa19.64■□□□□ 0.73
PDLIM2-220ENST00000622226 CLSTN1O94985 981 aa19.61■□□□□ 0.73
PDLIM2-220ENST00000622226 VSIG10Q8N0Z9 540 aa19.57■□□□□ 0.72
PDLIM2-220ENST00000622226 DCAF1Q9Y4B6 1507 aa19.57■□□□□ 0.72
PDLIM2-220ENST00000622226 OS9Q13438 667 aaPredicted RBP19.57■□□□□ 0.72
PDLIM2-220ENST00000622226 SLKQ9H2G2 1235 aaPredicted RBP19.56■□□□□ 0.72
PDLIM2-220ENST00000622226 KIAA2012Q0VF49 1180 aa19.56■□□□□ 0.72
PDLIM2-220ENST00000622226 RGL3Q3MIN7 710 aa19.55■□□□□ 0.72
PDLIM2-220ENST00000622226 RRP7BPQ9NSQ0 103 aa19.54■□□□□ 0.72
PDLIM2-220ENST00000622226 NOC3LQ8WTT2 800 aaKnown RBP19.54■□□□□ 0.72
PDLIM2-220ENST00000622226 SOX12O15370 315 aa19.54■□□□□ 0.72
PDLIM2-220ENST00000622226 CFAP53Q96M91 514 aa19.54■□□□□ 0.72
PDLIM2-220ENST00000622226 KNSTRNQ9Y448 316 aa19.52■□□□□ 0.71
PDLIM2-220ENST00000622226 HSP90AA2PQ14568 343 aaPredicted RBP19.51■□□□□ 0.71
PDLIM2-220ENST00000622226 PDE4CQ08493 712 aa19.5■□□□□ 0.71
PDLIM2-220ENST00000622226 TSPY4P0CV99 314 aa19.49■□□□□ 0.71
PDLIM2-220ENST00000622226 TSPY10P0CW01 314 aa19.49■□□□□ 0.71
PDLIM2-220ENST00000622226 MAPK8IP3Q9UPT6 1336 aa19.47■□□□□ 0.71
PDLIM2-220ENST00000622226 CC2D1BQ5T0F9 858 aaKnown RBP19.46■□□□□ 0.71
PDLIM2-220ENST00000622226 APBB1O00213 710 aa19.43■□□□□ 0.7
PDLIM2-220ENST00000622226 GOLGA6L3A6NEY3 463 aa19.43■□□□□ 0.7
PDLIM2-220ENST00000622226 CCDC9Q9Y3X0 531 aaKnown RBP19.43■□□□□ 0.7
PDLIM2-220ENST00000622226 A0A0U1RQG5 324 aaPredicted RBP19.42■□□□□ 0.7
PDLIM2-220ENST00000622226 GBP4Q96PP9 640 aa19.41■□□□□ 0.7
PDLIM2-220ENST00000622226 GOLGA6L1Q8N7Z2 621 aa19.41■□□□□ 0.7
PDLIM2-220ENST00000622226 GNL2Q13823 731 aaKnown RBP19.4■□□□□ 0.7
PDLIM2-220ENST00000622226 MCCP23508 829 aa19.39■□□□□ 0.69
PDLIM2-220ENST00000622226 U2SURPO15042 1029 aaKnown RBP19.39■□□□□ 0.69
PDLIM2-220ENST00000622226 TIMELESSQ9UNS1 1208 aa19.38■□□□□ 0.69
PDLIM2-220ENST00000622226 CARD11Q9BXL7 1154 aa19.37■□□□□ 0.69
PDLIM2-220ENST00000622226 ISY1Q9ULR0 285 aaKnown RBP19.37■□□□□ 0.69
PDLIM2-220ENST00000622226 FOXD4L1Q9NU39 408 aa19.36■□□□□ 0.69
PDLIM2-220ENST00000622226 GOLGA2Q08379 1002 aa19.35■□□□□ 0.69
PDLIM2-220ENST00000622226 TSHZ2Q9NRE2 1034 aa19.35■□□□□ 0.69
PDLIM2-220ENST00000622226 MTUS2Q5JR59 1369 aa19.34■□□□□ 0.69
PDLIM2-220ENST00000622226 PATL2C9JE40 543 aaKnown RBP19.34■□□□□ 0.69
PDLIM2-220ENST00000622226 PRM3Q9NNZ6 103 aa19.33■□□□□ 0.68
PDLIM2-220ENST00000622226 PTMSP20962 102 aa19.32■□□□□ 0.68
PDLIM2-220ENST00000622226 ANO8Q9HCE9 1232 aaPredicted RBP19.32■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms