RNA–Protein interactions for RNA: ENST00000603837.1

LINC01109-201, Transcript of long intergenic non-protein coding RNA 1109, humanhuman

BASIC

Gene LINC01109, Length 3,081 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01109-201ENST00000603837 NPM2Q86SE8 214 aaKnown RBP7.43□□□□□ -1.22
LINC01109-201ENST00000603837 C14orf37Q86TY3 774 aa7.42□□□□□ -1.22
LINC01109-201ENST00000603837 GTF3C3Q9Y5Q9 886 aa7.4□□□□□ -1.22
LINC01109-201ENST00000603837 IFNLR1Q8IU57 520 aaPredicted RBP7.39□□□□□ -1.23
LINC01109-201ENST00000603837 CREBZFQ9NS37 354 aa7.38□□□□□ -1.23
LINC01109-201ENST00000603837 FXR2P51116 673 aaKnown RBP eCLIP7.38□□□□□ -1.23
LINC01109-201ENST00000603837 MYO15BQ96JP2 1530 aa7.38□□□□□ -1.23
LINC01109-201ENST00000603837 LOC105371045A0A1W2PR82 267 aa7.38□□□□□ -1.23
LINC01109-201ENST00000603837 BCANQ96GW7 911 aa7.38□□□□□ -1.23
LINC01109-201ENST00000603837 CHADLQ6NUI6 762 aa7.37□□□□□ -1.23
LINC01109-201ENST00000603837 HAP1P54257 671 aaPredicted RBP7.37□□□□□ -1.23
LINC01109-201ENST00000603837 PIP4P2Q8N4L2 257 aa7.37□□□□□ -1.23
LINC01109-201ENST00000603837 PRKAR2AP13861 404 aaKnown RBP7.36□□□□□ -1.23
LINC01109-201ENST00000603837 ZBTB47Q9UFB7 747 aaPredicted RBP7.36□□□□□ -1.23
LINC01109-201ENST00000603837 SHROOM4Q9ULL8 1493 aa7.35□□□□□ -1.23
LINC01109-201ENST00000603837 CENPBP07199 599 aaPredicted RBP7.33□□□□□ -1.24
LINC01109-201ENST00000603837 TRIM26Q12899 539 aaPredicted RBP7.32□□□□□ -1.24
LINC01109-201ENST00000603837 SUPT5HO00267 1087 aaKnown RBP7.31□□□□□ -1.24
LINC01109-201ENST00000603837 MNX1P50219 401 aaPredicted RBP7.31□□□□□ -1.24
LINC01109-201ENST00000603837 PDIA4P13667 645 aaKnown RBP7.3□□□□□ -1.24
LINC01109-201ENST00000603837 FARP1Q9Y4F1 1045 aaPredicted RBP7.3□□□□□ -1.24
LINC01109-201ENST00000603837 SPOCK2Q92563 424 aa7.29□□□□□ -1.24
LINC01109-201ENST00000603837 NPM1P06748 294 aaKnown RBP eCLIP7.28□□□□□ -1.24
LINC01109-201ENST00000603837 DHX37Q8IY37 1157 aaKnown RBP7.27□□□□□ -1.25
LINC01109-201ENST00000603837 NACADO15069 1562 aa7.27□□□□□ -1.25
LINC01109-201ENST00000603837 PLCB2Q00722 1185 aa7.26□□□□□ -1.25
LINC01109-201ENST00000603837 PCGF6Q9BYE7 350 aa7.26□□□□□ -1.25
LINC01109-201ENST00000603837 RB1CC1Q8TDY2 1594 aa7.26□□□□□ -1.25
LINC01109-201ENST00000603837 ACIN1Q9UKV3 1341 aaKnown RBP7.25□□□□□ -1.25
LINC01109-201ENST00000603837 CHMP4AQ9BY43 222 aa7.24□□□□□ -1.25
LINC01109-201ENST00000603837 NUBP1P53384 320 aa7.23□□□□□ -1.25
LINC01109-201ENST00000603837 UBTFP17480 764 aaKnown RBP7.23□□□□□ -1.25
LINC01109-201ENST00000603837 TMEM132AQ24JP5 1023 aa7.21□□□□□ -1.26
LINC01109-201ENST00000603837 RASEFQ8IZ41 740 aa7.2□□□□□ -1.26
LINC01109-201ENST00000603837 CIZ1Q9ULV3 898 aaPredicted RBP7.2□□□□□ -1.26
LINC01109-201ENST00000603837 POTEHQ6S545 545 aa7.19□□□□□ -1.26
LINC01109-201ENST00000603837 FAM212AQ96EL1 285 aa7.19□□□□□ -1.26
LINC01109-201ENST00000603837 DCAF8Q5TAQ9 597 aa7.19□□□□□ -1.26
LINC01109-201ENST00000603837 DCAF8L2P0C7V8 631 aa7.19□□□□□ -1.26
LINC01109-201ENST00000603837 PDE4CQ08493 712 aa7.19□□□□□ -1.26
LINC01109-201ENST00000603837 UBE2Q2Q8WVN8 375 aa7.18□□□□□ -1.26
LINC01109-201ENST00000603837 NEUROD1Q13562 356 aa7.18□□□□□ -1.26
LINC01109-201ENST00000603837 TSPYL2Q9H2G4 693 aaPredicted RBP7.18□□□□□ -1.26
LINC01109-201ENST00000603837 GSE1Q14687 1217 aa7.17□□□□□ -1.26
LINC01109-201ENST00000603837 DCAF1Q9Y4B6 1507 aa7.17□□□□□ -1.26
LINC01109-201ENST00000603837 PAK3O75914 559 aaPredicted RBP7.16□□□□□ -1.26
LINC01109-201ENST00000603837 ANP32EQ9BTT0 268 aa7.16□□□□□ -1.26
LINC01109-201ENST00000603837 CD44P16070 742 aaKnown RBP7.15□□□□□ -1.26
LINC01109-201ENST00000603837 HAX1O00165 279 aa7.15□□□□□ -1.27
LINC01109-201ENST00000603837 PKD2Q13563 968 aa7.15□□□□□ -1.27
LINC01109-201ENST00000603837 ABCC9O60706 1549 aa7.14□□□□□ -1.27
LINC01109-201ENST00000603837 C19orf67A6NJJ6 358 aa7.13□□□□□ -1.27
LINC01109-201ENST00000603837 CFAP44Q96MT7 982 aa7.12□□□□□ -1.27
LINC01109-201ENST00000603837 ZRANB1Q9UGI0 708 aa7.12□□□□□ -1.27
LINC01109-201ENST00000603837 ECM2O94769 699 aaPredicted RBP7.12□□□□□ -1.27
LINC01109-201ENST00000603837 ZEB1P37275 1124 aaPredicted RBP7.11□□□□□ -1.27
LINC01109-201ENST00000603837 BCL11BQ9C0K0 894 aaPredicted RBP7.1□□□□□ -1.27
LINC01109-201ENST00000603837 CCDC61Q9Y6R9 512 aa7.1□□□□□ -1.27
LINC01109-201ENST00000603837 TRIM41Q8WV44 630 aa7.1□□□□□ -1.27
LINC01109-201ENST00000603837 PKNOX2Q96KN3 472 aa7.1□□□□□ -1.27
LINC01109-201ENST00000603837 PYGBP11216 843 aa7.09□□□□□ -1.27
LINC01109-201ENST00000603837 KDM2AQ9Y2K7 1162 aa7.08□□□□□ -1.28
LINC01109-201ENST00000603837 EVX2Q03828 476 aa7.07□□□□□ -1.28
LINC01109-201ENST00000603837 IGSF3O75054 1194 aa7.06□□□□□ -1.28
LINC01109-201ENST00000603837 CHRM1P11229 460 aaPredicted RBP7.05□□□□□ -1.28
LINC01109-201ENST00000603837 ANO8Q9HCE9 1232 aaPredicted RBP7.05□□□□□ -1.28
LINC01109-201ENST00000603837 CCDC136Q96JN2 1154 aa7.04□□□□□ -1.28
LINC01109-201ENST00000603837 PHF12Q96QT6 1004 aa7.04□□□□□ -1.28
LINC01109-201ENST00000603837 UNC13AQ9UPW8 1703 aa7.04□□□□□ -1.28
LINC01109-201ENST00000603837 ZNF579Q8NAF0 562 aaKnown RBP7.04□□□□□ -1.28
LINC01109-201ENST00000603837 RGL2O15211 777 aa7.04□□□□□ -1.28
LINC01109-201ENST00000603837 ZCCHC6Q5VYS8 1495 aaKnown RBP7.03□□□□□ -1.28
LINC01109-201ENST00000603837 IRX6P78412 446 aaPredicted RBP7.03□□□□□ -1.28
LINC01109-201ENST00000603837 KIF12Q96FN5 646 aa7.02□□□□□ -1.29
LINC01109-201ENST00000603837 MAP3K13O43283 966 aa7.02□□□□□ -1.29
LINC01109-201ENST00000603837 PCDHB13Q9Y5F0 798 aa7.02□□□□□ -1.29
LINC01109-201ENST00000603837 RNF25Q96BH1 459 aaPredicted RBP7.01□□□□□ -1.29
LINC01109-201ENST00000603837 NEFLP07196 543 aa7□□□□□ -1.29
LINC01109-201ENST00000603837 CDK11BP21127 795 aaKnown RBP6.99□□□□□ -1.29
LINC01109-201ENST00000603837 CDK11AQ9UQ88 783 aaPredicted RBP6.99□□□□□ -1.29
LINC01109-201ENST00000603837 RIOK3O14730 519 aaKnown RBP6.99□□□□□ -1.29
LINC01109-201ENST00000603837 ZNF467Q7Z7K2 595 aaPredicted RBP6.99□□□□□ -1.29
LINC01109-201ENST00000603837 SGIP1Q9BQI5 828 aa6.99□□□□□ -1.29
LINC01109-201ENST00000603837 PCDHB8Q9UN66 801 aa6.98□□□□□ -1.29
LINC01109-201ENST00000603837 IFNL1Q8IU54 200 aa6.98□□□□□ -1.29
LINC01109-201ENST00000603837 BRD2P25440 801 aaKnown RBP6.97□□□□□ -1.29
LINC01109-201ENST00000603837 TAF7LQ5H9L4 462 aa6.97□□□□□ -1.29
LINC01109-201ENST00000603837 CLCN6P51797 869 aa6.97□□□□□ -1.29
LINC01109-201ENST00000603837 MS4A3Q96HJ5 214 aa6.97□□□□□ -1.29
LINC01109-201ENST00000603837 VGFO15240 615 aaPredicted RBP6.95□□□□□ -1.3
LINC01109-201ENST00000603837 GALR2O43603 387 aaPredicted RBP6.95□□□□□ -1.3
LINC01109-201ENST00000603837 POLR3GLQ9BT43 218 aa6.95□□□□□ -1.3
LINC01109-201ENST00000603837 A0A0U1RQG5 324 aaPredicted RBP6.94□□□□□ -1.3
LINC01109-201ENST00000603837 GABBR2O75899 941 aa6.93□□□□□ -1.3
LINC01109-201ENST00000603837 SP7Q8TDD2 431 aaPredicted RBP6.93□□□□□ -1.3
LINC01109-201ENST00000603837 BICRAQ9NZM4 1560 aa6.93□□□□□ -1.3
LINC01109-201ENST00000603837 PDAP1Q13442 181 aaKnown RBP6.93□□□□□ -1.3
LINC01109-201ENST00000603837 PAXIP1Q6ZW49 1069 aaPredicted RBP6.92□□□□□ -1.3
LINC01109-201ENST00000603837 CHGAP10645 457 aaKnown RBP6.92□□□□□ -1.3
LINC01109-201ENST00000603837 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms