RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 FHAD1B1AJZ9 1412 aa21.83■■□□□ 1.08
LIG3-205ENST00000585941 AQRO60306 1485 aaKnown RBP eCLIP21.81■■□□□ 1.081e-7■■■■■ 47.9
LIG3-205ENST00000585941 ADAMTS12P58397 1594 aa21.8■■□□□ 1.08
LIG3-205ENST00000585941 MAP3K1Q13233 1512 aa21.74■■□□□ 1.07
LIG3-205ENST00000585941 ZNF608Q9ULD9 1512 aaPredicted RBP21.74■■□□□ 1.07
LIG3-205ENST00000585941 EIF4G3O43432 1585 aaKnown RBP21.73■■□□□ 1.07
LIG3-205ENST00000585941 TTBK1Q5TCY1 1321 aaPredicted RBP21.73■■□□□ 1.07
LIG3-205ENST00000585941 SAMD9Q5K651 1589 aa21.68■■□□□ 1.06
LIG3-205ENST00000585941 ZEB1P37275 1124 aaPredicted RBP21.68■■□□□ 1.06
LIG3-205ENST00000585941 MAGI1Q96QZ7 1491 aaPredicted RBP21.65■■□□□ 1.06
LIG3-205ENST00000585941 FMN1Q68DA7 1419 aa21.64■■□□□ 1.06
LIG3-205ENST00000585941 TIAM1Q13009 1591 aa21.63■■□□□ 1.05
LIG3-205ENST00000585941 FYCO1Q9BQS8 1478 aa21.63■■□□□ 1.05
LIG3-205ENST00000585941 IQGAP2Q13576 1575 aa21.63■■□□□ 1.05
LIG3-205ENST00000585941 SNAPC4Q5SXM2 1469 aa21.63■■□□□ 1.05
LIG3-205ENST00000585941 FHOD3Q2V2M9 1422 aa21.62■■□□□ 1.05
LIG3-205ENST00000585941 PCF11O94913 1555 aaKnown RBP21.62■■□□□ 1.05
LIG3-205ENST00000585941 CASKIN1Q8WXD9 1431 aa21.6■■□□□ 1.05
LIG3-205ENST00000585941 CFAP43Q8NDM7 1665 aa21.59■■□□□ 1.05
LIG3-205ENST00000585941 GRIN2AQ12879 1464 aa21.58■■□□□ 1.04
LIG3-205ENST00000585941 KANK4Q5T7N3 995 aaPredicted RBP21.57■■□□□ 1.04
LIG3-205ENST00000585941 P3H3Q8IVL6 736 aa21.57■■□□□ 1.04
LIG3-205ENST00000585941 SYNJ2O15056 1496 aa21.55■■□□□ 1.04
LIG3-205ENST00000585941 KIAA0586Q9BVV6 1533 aa21.54■■□□□ 1.04
LIG3-205ENST00000585941 UGGT2Q9NYU1 1516 aa21.54■■□□□ 1.04
LIG3-205ENST00000585941 LRRC9Q6ZRR7 1453 aa21.52■■□□□ 1.04
LIG3-205ENST00000585941 RRBP1Q9P2E9 1410 aaKnown RBP21.49■■□□□ 1.03
LIG3-205ENST00000585941 CHMP7Q8WUX9 453 aaPredicted RBP21.46■■□□□ 1.03
LIG3-205ENST00000585941 ATP1B4Q9UN42 357 aaPredicted RBP21.42■■□□□ 1.02
LIG3-205ENST00000585941 CCER1Q8TC90 406 aaPredicted RBP21.41■■□□□ 1.02
LIG3-205ENST00000585941 CCNB3Q8WWL7 1395 aa21.4■■□□□ 1.02
LIG3-205ENST00000585941 NUP160Q12769 1436 aa21.4■■□□□ 1.02
LIG3-205ENST00000585941 CEP170Q5SW79 1584 aa21.39■■□□□ 1.02
LIG3-205ENST00000585941 CCDC18Q5T9S5 1454 aa21.39■■□□□ 1.01
LIG3-205ENST00000585941 KIAA0556O60303 1618 aa21.39■■□□□ 1.01
LIG3-205ENST00000585941 HECW1Q76N89 1606 aa21.39■■□□□ 1.01
LIG3-205ENST00000585941 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.38■■□□□ 1.01
LIG3-205ENST00000585941 HNRNPUL2Q1KMD3 747 aaKnown RBP21.38■■□□□ 1.01
LIG3-205ENST00000585941 DISP1Q96F81 1524 aa21.36■■□□□ 1.01
LIG3-205ENST00000585941 LRRIQ1Q96JM4 1722 aa21.35■■□□□ 1.01
LIG3-205ENST00000585941 FBLN2P98095 1184 aa21.32■■□□□ 1
LIG3-205ENST00000585941 MTUS2Q5JR59 1369 aa21.31■■□□□ 1
LIG3-205ENST00000585941 EHBP1L1Q8N3D4 1523 aa21.31■■□□□ 1
LIG3-205ENST00000585941 PHLDB1Q86UU1 1377 aa21.3■■□□□ 1
LIG3-205ENST00000585941 CARMIL2Q6F5E8 1435 aa21.29■■□□□ 1
LIG3-205ENST00000585941 SUPT6HQ7KZ85 1726 aaKnown RBP21.27■■□□□ 1
LIG3-205ENST00000585941 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.27■■□□□ 1
LIG3-205ENST00000585941 EPRSP07814 1512 aaKnown RBP21.26■□□□□ 0.99
LIG3-205ENST00000585941 RAPGEF6Q8TEU7 1601 aa21.23■□□□□ 0.99
LIG3-205ENST00000585941 JPH4Q96JJ6 628 aa21.23■□□□□ 0.99
LIG3-205ENST00000585941 CHD1O14646 1710 aa21.22■□□□□ 0.99
LIG3-205ENST00000585941 NCOA2Q15596 1464 aa21.19■□□□□ 0.98
LIG3-205ENST00000585941 FGD6Q6ZV73 1430 aa21.17■□□□□ 0.98
LIG3-205ENST00000585941 ARHGEF11O15085 1522 aa21.17■□□□□ 0.98
LIG3-205ENST00000585941 MYOM3Q5VTT5 1437 aa21.15■□□□□ 0.98
LIG3-205ENST00000585941 MAGI3Q5TCQ9 1506 aa21.15■□□□□ 0.98
LIG3-205ENST00000585941 NUP153P49790 1475 aaKnown RBP21.15■□□□□ 0.98
LIG3-205ENST00000585941 CDK13Q14004 1512 aaKnown RBP21.14■□□□□ 0.97
LIG3-205ENST00000585941 CLSPNQ9HAW4 1339 aa21.13■□□□□ 0.97
LIG3-205ENST00000585941 FAM50AQ14320 339 aaKnown RBP21.13■□□□□ 0.97
LIG3-205ENST00000585941 CDK11AQ9UQ88 783 aaPredicted RBP21.12■□□□□ 0.97
LIG3-205ENST00000585941 SHROOM2Q13796 1616 aa21.09■□□□□ 0.97
LIG3-205ENST00000585941 ITGAEP38570 1179 aa21.08■□□□□ 0.96
LIG3-205ENST00000585941 PRG4Q92954 1404 aaPredicted RBP21.07■□□□□ 0.96
LIG3-205ENST00000585941 ABCA8O94911 1581 aa21.06■□□□□ 0.96
LIG3-205ENST00000585941 PLB1Q6P1J6 1458 aa21.06■□□□□ 0.96
LIG3-205ENST00000585941 MIA2Q96PC5 1412 aa21.05■□□□□ 0.96
LIG3-205ENST00000585941 SETD5Q9C0A6 1442 aa21.05■□□□□ 0.96
LIG3-205ENST00000585941 PTPN23Q9H3S7 1636 aa21.05■□□□□ 0.96
LIG3-205ENST00000585941 DHX57Q6P158 1386 aaKnown RBP21.03■□□□□ 0.96
LIG3-205ENST00000585941 TCOF1Q13428 1488 aaKnown RBP21.03■□□□□ 0.96
LIG3-205ENST00000585941 RAB3GAP2Q9H2M9 1393 aa21.01■□□□□ 0.95
LIG3-205ENST00000585941 TROQ12816 1431 aaPredicted RBP21■□□□□ 0.95
LIG3-205ENST00000585941 PTPRGP23470 1445 aa20.99■□□□□ 0.95
LIG3-205ENST00000585941 ADCY10Q96PN6 1610 aa20.99■□□□□ 0.95
LIG3-205ENST00000585941 CLASP1Q7Z460 1538 aa20.98■□□□□ 0.95
LIG3-205ENST00000585941 ARID3CA6NKF2 412 aa20.96■□□□□ 0.95
LIG3-205ENST00000585941 ITSN2Q9NZM3 1697 aa20.93■□□□□ 0.94
LIG3-205ENST00000585941 HFM1A2PYH4 1435 aa20.92■□□□□ 0.94
LIG3-205ENST00000585941 ATP10BO94823 1461 aa20.91■□□□□ 0.94
LIG3-205ENST00000585941 PLEKHD1A6NEE1 506 aa20.89■□□□□ 0.93
LIG3-205ENST00000585941 UACAQ9BZF9 1416 aa20.88■□□□□ 0.93
LIG3-205ENST00000585941 PTPRKQ15262 1439 aa20.87■□□□□ 0.93
LIG3-205ENST00000585941 AKNAQ7Z591 1439 aa20.87■□□□□ 0.93
LIG3-205ENST00000585941 KIF14Q15058 1648 aa20.87■□□□□ 0.93
LIG3-205ENST00000585941 NAIPQ13075 1403 aa20.83■□□□□ 0.92
LIG3-205ENST00000585941 GCC2Q8IWJ2 1684 aa20.82■□□□□ 0.92
LIG3-205ENST00000585941 ABCC2Q92887 1545 aa20.82■□□□□ 0.92
LIG3-205ENST00000585941 DNMT1P26358 1616 aaKnown RBP20.82■□□□□ 0.92
LIG3-205ENST00000585941 ACIN1Q9UKV3 1341 aaKnown RBP20.82■□□□□ 0.92
LIG3-205ENST00000585941 GPATCH8Q9UKJ3 1502 aaKnown RBP20.81■□□□□ 0.92
LIG3-205ENST00000585941 ERCC6L2Q5T890 1561 aa20.81■□□□□ 0.92
LIG3-205ENST00000585941 MAPKBP1O60336 1514 aa20.8■□□□□ 0.92
LIG3-205ENST00000585941 CFDP1Q9UEE9 299 aaPredicted RBP20.78■□□□□ 0.92
LIG3-205ENST00000585941 ROCK1Q13464 1354 aa20.78■□□□□ 0.92
LIG3-205ENST00000585941 DAPK1P53355 1430 aa20.78■□□□□ 0.92
LIG3-205ENST00000585941 UHRF1BP1LA0JNW5 1464 aa20.78■□□□□ 0.92
LIG3-205ENST00000585941 ABCC10Q5T3U5 1492 aa20.78■□□□□ 0.92
LIG3-205ENST00000585941 CDC42BPAQ5VT25 1732 aa20.77■□□□□ 0.91
LIG3-205ENST00000585941 CAMSAP2Q08AD1 1489 aa20.76■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms