RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 PROM2Q8N271 834 aa4.61□□□□□ -1.67
SMCHD1-211ENST00000584897 GOLGA2Q08379 1002 aa4.6□□□□□ -1.67
SMCHD1-211ENST00000584897 GABBR2O75899 941 aa4.59□□□□□ -1.68
SMCHD1-211ENST00000584897 SLC39A7Q92504 469 aa4.59□□□□□ -1.68
SMCHD1-211ENST00000584897 ZNF467Q7Z7K2 595 aaPredicted RBP4.58□□□□□ -1.68
SMCHD1-211ENST00000584897 SPOCK2Q92563 424 aa4.57□□□□□ -1.68
SMCHD1-211ENST00000584897 C7P10643 843 aa4.56□□□□□ -1.68
SMCHD1-211ENST00000584897 TSPYL2Q9H2G4 693 aaPredicted RBP4.56□□□□□ -1.68
SMCHD1-211ENST00000584897 SCUBE2Q9NQ36 999 aa4.56□□□□□ -1.68
SMCHD1-211ENST00000584897 TIE1P35590 1138 aa4.54□□□□□ -1.68
SMCHD1-211ENST00000584897 SEC24BO95487 1268 aa4.53□□□□□ -1.68
SMCHD1-211ENST00000584897 SNPHO15079 494 aa4.53□□□□□ -1.68
SMCHD1-211ENST00000584897 VASPP50552 380 aaPredicted RBP4.53□□□□□ -1.68
SMCHD1-211ENST00000584897 IER5LQ5T953 404 aa4.52□□□□□ -1.69
SMCHD1-211ENST00000584897 L3MBTL3Q96JM7 780 aaPredicted RBP4.51□□□□□ -1.69
SMCHD1-211ENST00000584897 PLCG2P16885 1265 aa4.5□□□□□ -1.69
SMCHD1-211ENST00000584897 MKRN3Q13064 507 aaKnown RBP4.5□□□□□ -1.69
SMCHD1-211ENST00000584897 LHX8Q68G74 356 aa4.5□□□□□ -1.69
SMCHD1-211ENST00000584897 CIZ1Q9ULV3 898 aaPredicted RBP4.5□□□□□ -1.69
SMCHD1-211ENST00000584897 PCDHB13Q9Y5F0 798 aa4.5□□□□□ -1.69
SMCHD1-211ENST00000584897 CHRM1P11229 460 aaPredicted RBP4.48□□□□□ -1.69
SMCHD1-211ENST00000584897 KIF12Q96FN5 646 aa4.46□□□□□ -1.7
SMCHD1-211ENST00000584897 RYDENQ9NUL5 291 aaKnown RBP4.46□□□□□ -1.7
SMCHD1-211ENST00000584897 PHF12Q96QT6 1004 aa4.45□□□□□ -1.7
SMCHD1-211ENST00000584897 PCDH10Q9P2E7 1040 aa4.45□□□□□ -1.7
SMCHD1-211ENST00000584897 PDAP1Q13442 181 aaKnown RBP4.45□□□□□ -1.7
SMCHD1-211ENST00000584897 MS4A3Q96HJ5 214 aa4.43□□□□□ -1.7
SMCHD1-211ENST00000584897 NUBP1P53384 320 aa4.43□□□□□ -1.7
SMCHD1-211ENST00000584897 TMEM106CQ9BVX2 250 aa4.42□□□□□ -1.7
SMCHD1-211ENST00000584897 EIF2AK3Q9NZJ5 1116 aaKnown RBP4.42□□□□□ -1.7
SMCHD1-211ENST00000584897 CCDC61Q9Y6R9 512 aa4.42□□□□□ -1.7
SMCHD1-211ENST00000584897 METRNQ9UJH8 293 aa4.42□□□□□ -1.7
SMCHD1-211ENST00000584897 ASTLQ6HA08 431 aaPredicted RBP4.42□□□□□ -1.7
SMCHD1-211ENST00000584897 MNX1P50219 401 aaPredicted RBP4.41□□□□□ -1.7
SMCHD1-211ENST00000584897 ATMINO43313 823 aaPredicted RBP4.41□□□□□ -1.7
SMCHD1-211ENST00000584897 C3orf67Q6ZVT6 689 aa4.41□□□□□ -1.7
SMCHD1-211ENST00000584897 VGFO15240 615 aaPredicted RBP4.4□□□□□ -1.7
SMCHD1-211ENST00000584897 RIMBP2O15034 1052 aa4.4□□□□□ -1.71
SMCHD1-211ENST00000584897 MAP3K13O43283 966 aa4.4□□□□□ -1.71
SMCHD1-211ENST00000584897 RASEFQ8IZ41 740 aa4.4□□□□□ -1.71
SMCHD1-211ENST00000584897 OCEL1Q9H607 264 aa4.4□□□□□ -1.71
SMCHD1-211ENST00000584897 GALR2O43603 387 aaPredicted RBP4.39□□□□□ -1.71
SMCHD1-211ENST00000584897 PSEN1P49768 467 aa4.39□□□□□ -1.71
SMCHD1-211ENST00000584897 EVX2Q03828 476 aa4.37□□□□□ -1.71
SMCHD1-211ENST00000584897 SOX12O15370 315 aa4.37□□□□□ -1.71
SMCHD1-211ENST00000584897 PYGBP11216 843 aa4.35□□□□□ -1.71
SMCHD1-211ENST00000584897 BMP2KQ9NSY1 1161 aaPredicted RBP4.35□□□□□ -1.71
SMCHD1-211ENST00000584897 TRIM35Q9UPQ4 493 aa4.35□□□□□ -1.71
SMCHD1-211ENST00000584897 RIOK3O14730 519 aaKnown RBP4.35□□□□□ -1.71
SMCHD1-211ENST00000584897 NLRP6P59044 892 aa4.35□□□□□ -1.71
SMCHD1-211ENST00000584897 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP4.35□□□□□ -1.717e-8■■■■□ 20.4
SMCHD1-211ENST00000584897 TTLL13PA6NNM8 815 aa4.34□□□□□ -1.71
SMCHD1-211ENST00000584897 ZNF316A6NFI3 1004 aaPredicted RBP4.34□□□□□ -1.72
SMCHD1-211ENST00000584897 ECM2O94769 699 aaPredicted RBP4.33□□□□□ -1.72
SMCHD1-211ENST00000584897 ATN1P54259 1190 aaPredicted RBP4.32□□□□□ -1.72
SMCHD1-211ENST00000584897 DOK7Q18PE1 504 aa4.32□□□□□ -1.72
SMCHD1-211ENST00000584897 TMEM121BQ9BXQ6 578 aaPredicted RBP4.32□□□□□ -1.72
SMCHD1-211ENST00000584897 RTN4Q9NQC3 1192 aaKnown RBP4.32□□□□□ -1.72
SMCHD1-211ENST00000584897 IFNL1Q8IU54 200 aa4.31□□□□□ -1.72
SMCHD1-211ENST00000584897 SLAIN1Q8ND83 568 aa4.31□□□□□ -1.72
SMCHD1-211ENST00000584897 ZNF710Q8N1W2 664 aa4.31□□□□□ -1.72
SMCHD1-211ENST00000584897 KCNH8Q96L42 1107 aa4.3□□□□□ -1.72
SMCHD1-211ENST00000584897 DNAJC5Q9H3Z4 198 aa4.3□□□□□ -1.72
SMCHD1-211ENST00000584897 TBC1D12O60347 775 aa4.28□□□□□ -1.72
SMCHD1-211ENST00000584897 PCDHB8Q9UN66 801 aa4.28□□□□□ -1.72
SMCHD1-211ENST00000584897 FAM163AQ96GL9 167 aaPredicted RBP4.28□□□□□ -1.72
SMCHD1-211ENST00000584897 CABP2Q9NPB3 220 aa4.27□□□□□ -1.73
SMCHD1-211ENST00000584897 POTEIP0CG38 1075 aa4.26□□□□□ -1.73
SMCHD1-211ENST00000584897 BOLA1Q9Y3E2 137 aa4.26□□□□□ -1.73
SMCHD1-211ENST00000584897 PSDA5PKW4 1024 aaPredicted RBP4.26□□□□□ -1.73
SMCHD1-211ENST00000584897 IFNLR1Q8IU57 520 aaPredicted RBP4.26□□□□□ -1.73
SMCHD1-211ENST00000584897 ZSWIM6Q9HCJ5 1215 aa4.26□□□□□ -1.73
SMCHD1-211ENST00000584897 STAC3Q96MF2 364 aa4.26□□□□□ -1.73
SMCHD1-211ENST00000584897 STK24Q9Y6E0 443 aa4.26□□□□□ -1.73
SMCHD1-211ENST00000584897 PTGER2P43116 358 aa4.25□□□□□ -1.73
SMCHD1-211ENST00000584897 TMC2Q8TDI7 906 aa4.24□□□□□ -1.73
SMCHD1-211ENST00000584897 NISCHQ9Y2I1 1504 aa4.24□□□□□ -1.73
SMCHD1-211ENST00000584897 STK25O00506 426 aa4.24□□□□□ -1.73
SMCHD1-211ENST00000584897 IRX5P78411 483 aaPredicted RBP4.24□□□□□ -1.73
SMCHD1-211ENST00000584897 DCAF8L2P0C7V8 631 aa4.23□□□□□ -1.73
SMCHD1-211ENST00000584897 ZBTB4Q9P1Z0 1013 aaPredicted RBP4.22□□□□□ -1.73
SMCHD1-211ENST00000584897 CCDC180Q9P1Z9 1646 aa4.2□□□□□ -1.74
SMCHD1-211ENST00000584897 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP4.19□□□□□ -1.74
SMCHD1-211ENST00000584897 PELP1Q8IZL8 1130 aaKnown RBP4.19□□□□□ -1.74
SMCHD1-211ENST00000584897 ZFP91Q96JP5 570 aaPredicted RBP4.19□□□□□ -1.74
SMCHD1-211ENST00000584897 BCL11BQ9C0K0 894 aaPredicted RBP4.19□□□□□ -1.74
SMCHD1-211ENST00000584897 POTEGQ6S5H5 508 aa4.19□□□□□ -1.74
SMCHD1-211ENST00000584897 EMP3P54852 163 aa4.18□□□□□ -1.74
SMCHD1-211ENST00000584897 AMER1Q5JTC6 1135 aaPredicted RBP4.18□□□□□ -1.74
SMCHD1-211ENST00000584897 OTUD5Q96G74 571 aa4.18□□□□□ -1.74
SMCHD1-211ENST00000584897 ABCC9O60706 1549 aa4.18□□□□□ -1.74
SMCHD1-211ENST00000584897 EFCAB3Q8N7B9 438 aa4.18□□□□□ -1.74
SMCHD1-211ENST00000584897 POTEMA6NI47 508 aa4.17□□□□□ -1.74
SMCHD1-211ENST00000584897 ERBB3P21860 1342 aa4.17□□□□□ -1.74
SMCHD1-211ENST00000584897 PLSCR2Q9NRY7 297 aa4.17□□□□□ -1.74
SMCHD1-211ENST00000584897 PDE4AP27815 886 aa4.16□□□□□ -1.74
SMCHD1-211ENST00000584897 PBX2P40425 430 aa4.16□□□□□ -1.74
SMCHD1-211ENST00000584897 COLQQ9Y215 455 aaPredicted RBP4.15□□□□□ -1.74
SMCHD1-211ENST00000584897 HS6ST3Q8IZP7 471 aa4.15□□□□□ -1.74
SMCHD1-211ENST00000584897 TRPC6Q9Y210 931 aa4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms