RNA–Protein interactions for RNA: ENST00000581241.5

CSNK1D-217, Transcript of casein kinase 1 delta, humanhuman

TSL 2

Gene CSNK1D, Length 6,094 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1D-217ENST00000581241 HIRIP3Q9BW71 556 aaPredicted RBP19.14■□□□□ 0.65
CSNK1D-217ENST00000581241 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.13■□□□□ 0.655e-7■□□□□ 9.7
CSNK1D-217ENST00000581241 ZCCHC6Q5VYS8 1495 aaKnown RBP19.11■□□□□ 0.65
CSNK1D-217ENST00000581241 CLIP1P30622 1438 aa19.11■□□□□ 0.65
CSNK1D-217ENST00000581241 MTUS2Q5JR59 1369 aa19.09■□□□□ 0.65
CSNK1D-217ENST00000581241 ERICH6BQ5W0A0 696 aa19.08■□□□□ 0.65
CSNK1D-217ENST00000581241 MYO15BQ96JP2 1530 aa19.07■□□□□ 0.64
CSNK1D-217ENST00000581241 CDK11BP21127 795 aaKnown RBP19.06■□□□□ 0.64
CSNK1D-217ENST00000581241 NOP58Q9Y2X3 529 aaKnown RBP19.06■□□□□ 0.64
CSNK1D-217ENST00000581241 PTMAP06454 111 aaKnown RBP19.06■□□□□ 0.64
CSNK1D-217ENST00000581241 SUPT16HQ9Y5B9 1047 aaKnown RBP19.06■□□□□ 0.64
CSNK1D-217ENST00000581241 PPP4R2Q9NY27 417 aa19.04■□□□□ 0.64
CSNK1D-217ENST00000581241 NAP1L5Q96NT1 182 aaPredicted RBP19.04■□□□□ 0.64
CSNK1D-217ENST00000581241 GOLGA3Q08378 1498 aa19.02■□□□□ 0.64
CSNK1D-217ENST00000581241 TSPY4P0CV99 314 aa19.02■□□□□ 0.64
CSNK1D-217ENST00000581241 TSPY10P0CW01 314 aa19.02■□□□□ 0.64
CSNK1D-217ENST00000581241 CASC1Q6TDU7 716 aa19.02■□□□□ 0.63
CSNK1D-217ENST00000581241 DNTTIP2Q5QJE6 756 aaKnown RBP18.99■□□□□ 0.63
CSNK1D-217ENST00000581241 LAS1LQ9Y4W2 734 aaKnown RBP18.99■□□□□ 0.63
CSNK1D-217ENST00000581241 CEP162Q5TB80 1403 aa18.99■□□□□ 0.63
CSNK1D-217ENST00000581241 RSF1Q96T23 1441 aaPredicted RBP18.96■□□□□ 0.63
CSNK1D-217ENST00000581241 RTN4Q9NQC3 1192 aaKnown RBP18.96■□□□□ 0.63
CSNK1D-217ENST00000581241 RRP7BPQ9NSQ0 103 aa18.95■□□□□ 0.62
CSNK1D-217ENST00000581241 EEA1Q15075 1411 aa18.95■□□□□ 0.62
CSNK1D-217ENST00000581241 ZRSR1Q15695 479 aaKnown RBP18.92■□□□□ 0.62
CSNK1D-217ENST00000581241 CFAP53Q96M91 514 aa18.92■□□□□ 0.62
CSNK1D-217ENST00000581241 FTSJ3Q8IY81 847 aaKnown RBP18.91■□□□□ 0.62
CSNK1D-217ENST00000581241 NPM1P06748 294 aaKnown RBP eCLIP18.9■□□□□ 0.62
CSNK1D-217ENST00000581241 CDCA8Q53HL2 280 aa18.87■□□□□ 0.61
CSNK1D-217ENST00000581241 KNSTRNQ9Y448 316 aa18.86■□□□□ 0.61
CSNK1D-217ENST00000581241 PLPPR3Q6T4P5 718 aa18.85■□□□□ 0.61
CSNK1D-217ENST00000581241 HSP90AB1P08238 724 aaKnown RBP18.84■□□□□ 0.61
CSNK1D-217ENST00000581241 DEKP35659 375 aaKnown RBP18.83■□□□□ 0.6
CSNK1D-217ENST00000581241 L1TD1Q5T7N2 865 aaKnown RBP18.83■□□□□ 0.6
CSNK1D-217ENST00000581241 GOLGA6L6A8MZA4 724 aa18.82■□□□□ 0.6
CSNK1D-217ENST00000581241 TPRNQ4KMQ1 711 aa18.81■□□□□ 0.6
CSNK1D-217ENST00000581241 RGS3P49796 1198 aa18.81■□□□□ 0.6
CSNK1D-217ENST00000581241 SENP3-EIF4A1A0A087X0R7 540 aa18.8■□□□□ 0.6
CSNK1D-217ENST00000581241 CARD11Q9BXL7 1154 aa18.8■□□□□ 0.6
CSNK1D-217ENST00000581241 TNIKQ9UKE5 1360 aa18.78■□□□□ 0.6
CSNK1D-217ENST00000581241 B4GALNT3Q6L9W6 998 aa18.77■□□□□ 0.6
CSNK1D-217ENST00000581241 CHMP4BQ9H444 224 aaKnown RBP18.77■□□□□ 0.6
CSNK1D-217ENST00000581241 ZBTB7CA1YPR0 619 aa18.76■□□□□ 0.59
CSNK1D-217ENST00000581241 MS4A1P11836 297 aa18.75■□□□□ 0.59
CSNK1D-217ENST00000581241 MAPK8IP3Q9UPT6 1336 aa18.75■□□□□ 0.59
CSNK1D-217ENST00000581241 CEP164Q9UPV0 1460 aa18.75■□□□□ 0.59
CSNK1D-217ENST00000581241 HSCBQ8IWL3 235 aa18.74■□□□□ 0.59
CSNK1D-217ENST00000581241 RGL3Q3MIN7 710 aa18.74■□□□□ 0.59
CSNK1D-217ENST00000581241 PLCB2Q00722 1185 aa18.74■□□□□ 0.59
CSNK1D-217ENST00000581241 MSNP26038 577 aaKnown RBP18.72■□□□□ 0.59
CSNK1D-217ENST00000581241 FRAT1Q92837 279 aaPredicted RBP18.72■□□□□ 0.59
CSNK1D-217ENST00000581241 RBM19Q9Y4C8 960 aaKnown RBP18.72■□□□□ 0.59
CSNK1D-217ENST00000581241 CHAF1AQ13111 956 aaPredicted RBP18.71■□□□□ 0.59
CSNK1D-217ENST00000581241 CCER2I3L3R5 266 aa18.71■□□□□ 0.59
CSNK1D-217ENST00000581241 PPP1R15AO75807 674 aaPredicted RBP18.7■□□□□ 0.58
CSNK1D-217ENST00000581241 NUDCQ9Y266 331 aa18.69■□□□□ 0.58
CSNK1D-217ENST00000581241 C14orf37Q86TY3 774 aa18.69■□□□□ 0.58
CSNK1D-217ENST00000581241 NEUROD2Q15784 382 aa18.68■□□□□ 0.58
CSNK1D-217ENST00000581241 SIN3AQ96ST3 1273 aa18.68■□□□□ 0.58
CSNK1D-217ENST00000581241 CHMP7Q8WUX9 453 aaPredicted RBP18.68■□□□□ 0.58
CSNK1D-217ENST00000581241 NRDCO43847 1150 aa18.66■□□□□ 0.58
CSNK1D-217ENST00000581241 CC2D1BQ5T0F9 858 aaKnown RBP18.66■□□□□ 0.58
CSNK1D-217ENST00000581241 PLEKHD1A6NEE1 506 aa18.65■□□□□ 0.58
CSNK1D-217ENST00000581241 WRNQ14191 1432 aaPredicted RBP eCLIP18.64■□□□□ 0.573e-6■■■■■ 43
CSNK1D-217ENST00000581241 PTMSP20962 102 aa18.63■□□□□ 0.57
CSNK1D-217ENST00000581241 PNNQ9H307 717 aaKnown RBP18.63■□□□□ 0.57
CSNK1D-217ENST00000581241 SENP3Q9H4L4 574 aaPredicted RBP18.62■□□□□ 0.57
CSNK1D-217ENST00000581241 A0A0G2JS52 829 aa18.62■□□□□ 0.57
CSNK1D-217ENST00000581241 CFDP1Q9UEE9 299 aaPredicted RBP18.6■□□□□ 0.57
CSNK1D-217ENST00000581241 KIF27Q86VH2 1401 aa18.6■□□□□ 0.57
CSNK1D-217ENST00000581241 CFAP44Q96MT7 982 aa18.6■□□□□ 0.57
CSNK1D-217ENST00000581241 MCCP23508 829 aa18.58■□□□□ 0.57
CSNK1D-217ENST00000581241 OS9Q13438 667 aaPredicted RBP18.58■□□□□ 0.56
CSNK1D-217ENST00000581241 TIMELESSQ9UNS1 1208 aa18.57■□□□□ 0.56
CSNK1D-217ENST00000581241 GOLGA6L4A6NEF3 574 aa18.57■□□□□ 0.56
CSNK1D-217ENST00000581241 SPRYD3Q8NCJ5 442 aa18.57■□□□□ 0.56
CSNK1D-217ENST00000581241 CCNB3Q8WWL7 1395 aa18.57■□□□□ 0.56
CSNK1D-217ENST00000581241 TMF1P82094 1093 aa18.56■□□□□ 0.56
CSNK1D-217ENST00000581241 KCNH8Q96L42 1107 aa18.56■□□□□ 0.56
CSNK1D-217ENST00000581241 FGD1P98174 961 aa18.55■□□□□ 0.56
CSNK1D-217ENST00000581241 DRC7Q8IY82 874 aa18.55■□□□□ 0.56
CSNK1D-217ENST00000581241 PLEKHG5O94827 1062 aa18.55■□□□□ 0.56
CSNK1D-217ENST00000581241 KCNJ4P48050 445 aa18.55■□□□□ 0.56
CSNK1D-217ENST00000581241 RB1CC1Q8TDY2 1594 aa18.53■□□□□ 0.56
CSNK1D-217ENST00000581241 GBP4Q96PP9 640 aa18.52■□□□□ 0.56
CSNK1D-217ENST00000581241 U2SURPO15042 1029 aaKnown RBP18.51■□□□□ 0.55
CSNK1D-217ENST00000581241 TCERG1O14776 1098 aaKnown RBP18.5■□□□□ 0.55
CSNK1D-217ENST00000581241 NAP1L2Q9ULW6 460 aaPredicted RBP18.5■□□□□ 0.55
CSNK1D-217ENST00000581241 SETD5Q9C0A6 1442 aa18.49■□□□□ 0.55
CSNK1D-217ENST00000581241 TAOK2Q9UL54 1235 aa18.49■□□□□ 0.55
CSNK1D-217ENST00000581241 POGKQ9P215 609 aa18.48■□□□□ 0.55
CSNK1D-217ENST00000581241 HSPA5P11021 654 aaKnown RBP18.48■□□□□ 0.55
CSNK1D-217ENST00000581241 FHAD1B1AJZ9 1412 aa18.48■□□□□ 0.55
CSNK1D-217ENST00000581241 TULP1O00294 542 aaPredicted RBP18.48■□□□□ 0.55
CSNK1D-217ENST00000581241 TSHZ2Q9NRE2 1034 aa18.47■□□□□ 0.55
CSNK1D-217ENST00000581241 KTN1Q86UP2 1357 aaKnown RBP18.47■□□□□ 0.55
CSNK1D-217ENST00000581241 ARID4BQ4LE39 1312 aaPredicted RBP18.45■□□□□ 0.54
CSNK1D-217ENST00000581241 BAZ1BQ9UIG0 1483 aaKnown RBP18.44■□□□□ 0.54
CSNK1D-217ENST00000581241 KIAA2012Q0VF49 1180 aa18.44■□□□□ 0.54
CSNK1D-217ENST00000581241 IPO9Q96P70 1041 aaKnown RBP18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms