RNA–Protein interactions for RNA: ENST00000578600.1

PTPRM-208, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

TSL 2

Gene PTPRM, Length 578 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-208ENST00000578600 HAP1P54257 671 aaPredicted RBP12.21□□□□□ -0.45
PTPRM-208ENST00000578600 CHGAP10645 457 aaKnown RBP12.19□□□□□ -0.46
PTPRM-208ENST00000578600 CHRM1P11229 460 aaPredicted RBP12.19□□□□□ -0.46
PTPRM-208ENST00000578600 CHADLQ6NUI6 762 aa12.17□□□□□ -0.46
PTPRM-208ENST00000578600 PAXIP1Q6ZW49 1069 aaPredicted RBP12.16□□□□□ -0.46
PTPRM-208ENST00000578600 HS6ST3Q8IZP7 471 aa12.16□□□□□ -0.46
PTPRM-208ENST00000578600 RIOK3O14730 519 aaKnown RBP12.14□□□□□ -0.47
PTPRM-208ENST00000578600 DNAJC5Q9H3Z4 198 aa12.13□□□□□ -0.47
PTPRM-208ENST00000578600 FARP1Q9Y4F1 1045 aaPredicted RBP12.12□□□□□ -0.47
PTPRM-208ENST00000578600 FXR2P51116 673 aaKnown RBP eCLIP12.11□□□□□ -0.47
PTPRM-208ENST00000578600 CFAP44Q96MT7 982 aa12.11□□□□□ -0.47
PTPRM-208ENST00000578600 VSIG10Q8N0Z9 540 aa12.1□□□□□ -0.47
PTPRM-208ENST00000578600 SPRYD3Q8NCJ5 442 aa12.1□□□□□ -0.47
PTPRM-208ENST00000578600 TAOK2Q9UL54 1235 aa12.08□□□□□ -0.48
PTPRM-208ENST00000578600 PYGBP11216 843 aa12.07□□□□□ -0.48
PTPRM-208ENST00000578600 PRKAR2AP13861 404 aaKnown RBP12.07□□□□□ -0.48
PTPRM-208ENST00000578600 VGFO15240 615 aaPredicted RBP12.06□□□□□ -0.48
PTPRM-208ENST00000578600 SGIP1Q9BQI5 828 aa12.05□□□□□ -0.48
PTPRM-208ENST00000578600 CHRDL2Q6WN34 429 aa12.02□□□□□ -0.49
PTPRM-208ENST00000578600 NKX1-1Q15270 411 aaPredicted RBP12.01□□□□□ -0.49
PTPRM-208ENST00000578600 TSPYL2Q9H2G4 693 aaPredicted RBP12.01□□□□□ -0.49
PTPRM-208ENST00000578600 KDM2AQ9Y2K7 1162 aa12.01□□□□□ -0.49
PTPRM-208ENST00000578600 TSHZ2Q9NRE2 1034 aa11.99□□□□□ -0.49
PTPRM-208ENST00000578600 STK25O00506 426 aa11.98□□□□□ -0.49
PTPRM-208ENST00000578600 PIP4P2Q8N4L2 257 aa11.98□□□□□ -0.49
PTPRM-208ENST00000578600 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.97□□□□□ -0.49
PTPRM-208ENST00000578600 ZFP91Q96JP5 570 aaPredicted RBP11.97□□□□□ -0.49
PTPRM-208ENST00000578600 CCDC61Q9Y6R9 512 aa11.96□□□□□ -0.49
PTPRM-208ENST00000578600 GTPBP6O43824 516 aaPredicted RBP11.93□□□□□ -0.5
PTPRM-208ENST00000578600 BCL11BQ9C0K0 894 aaPredicted RBP11.93□□□□□ -0.5
PTPRM-208ENST00000578600 ZNF467Q7Z7K2 595 aaPredicted RBP11.91□□□□□ -0.5
PTPRM-208ENST00000578600 STK24Q9Y6E0 443 aa11.91□□□□□ -0.5
PTPRM-208ENST00000578600 PCDHB8Q9UN66 801 aa11.87□□□□□ -0.51
PTPRM-208ENST00000578600 PCDHB13Q9Y5F0 798 aa11.87□□□□□ -0.51
PTPRM-208ENST00000578600 ZNF579Q8NAF0 562 aaKnown RBP11.85□□□□□ -0.51
PTPRM-208ENST00000578600 PAK3O75914 559 aaPredicted RBP11.84□□□□□ -0.51
PTPRM-208ENST00000578600 PDAP1Q13442 181 aaKnown RBP11.84□□□□□ -0.51
PTPRM-208ENST00000578600 BCANQ96GW7 911 aa11.83□□□□□ -0.52
PTPRM-208ENST00000578600 KIF12Q96FN5 646 aa11.81□□□□□ -0.52
PTPRM-208ENST00000578600 RYDENQ9NUL5 291 aaKnown RBP11.79□□□□□ -0.52
PTPRM-208ENST00000578600 MAP3K13O43283 966 aa11.78□□□□□ -0.52
PTPRM-208ENST00000578600 PSEN1P49768 467 aa11.78□□□□□ -0.52
PTPRM-208ENST00000578600 IFNL1Q8IU54 200 aa11.78□□□□□ -0.52
PTPRM-208ENST00000578600 CD44P16070 742 aaKnown RBP11.75□□□□□ -0.53
PTPRM-208ENST00000578600 ZRANB1Q9UGI0 708 aa11.75□□□□□ -0.53
PTPRM-208ENST00000578600 PHF12Q96QT6 1004 aa11.69□□□□□ -0.54
PTPRM-208ENST00000578600 C19orf67A6NJJ6 358 aa11.68□□□□□ -0.54
PTPRM-208ENST00000578600 MFRPQ9BY79 579 aa11.68□□□□□ -0.54
PTPRM-208ENST00000578600 EFCAB3Q8N7B9 438 aa11.63□□□□□ -0.55
PTPRM-208ENST00000578600 CABP2Q9NPB3 220 aa11.62□□□□□ -0.55
PTPRM-208ENST00000578600 FBXO22Q8NEZ5 403 aa11.61□□□□□ -0.55
PTPRM-208ENST00000578600 SOX12O15370 315 aa11.6□□□□□ -0.55
PTPRM-208ENST00000578600 CADPS2Q86UW7 1296 aa11.59□□□□□ -0.55
PTPRM-208ENST00000578600 NLRP6P59044 892 aa11.57□□□□□ -0.56
PTPRM-208ENST00000578600 MS4A3Q96HJ5 214 aa11.57□□□□□ -0.56
PTPRM-208ENST00000578600 PPP1R37O75864 691 aa11.56□□□□□ -0.56
PTPRM-208ENST00000578600 PHF8Q9UPP1 1060 aa11.56□□□□□ -0.56
PTPRM-208ENST00000578600 TRPC6Q9Y210 931 aa11.56□□□□□ -0.56
PTPRM-208ENST00000578600 TMEM106CQ9BVX2 250 aa11.53□□□□□ -0.56
PTPRM-208ENST00000578600 PRKCSHP14314 528 aaPredicted RBP11.52□□□□□ -0.57
PTPRM-208ENST00000578600 NBR1Q14596 966 aa11.5□□□□□ -0.57
PTPRM-208ENST00000578600 MS4A4AQ96JQ5 239 aa11.5□□□□□ -0.57
PTPRM-208ENST00000578600 TIE1P35590 1138 aa11.48□□□□□ -0.57
PTPRM-208ENST00000578600 TPRNQ4KMQ1 711 aa11.46□□□□□ -0.57
PTPRM-208ENST00000578600 ABCC9O60706 1549 aa11.45□□□□□ -0.58
PTPRM-208ENST00000578600 EVX2Q03828 476 aa11.45□□□□□ -0.58
PTPRM-208ENST00000578600 TTLL13PA6NNM8 815 aa11.44□□□□□ -0.58
PTPRM-208ENST00000578600 GOLGA2Q08379 1002 aa11.44□□□□□ -0.58
PTPRM-208ENST00000578600 BMP2KQ9NSY1 1161 aaPredicted RBP11.43□□□□□ -0.58
PTPRM-208ENST00000578600 WDR70Q9NW82 654 aa11.43□□□□□ -0.58
PTPRM-208ENST00000578600 HAX1O00165 279 aa11.42□□□□□ -0.58
PTPRM-208ENST00000578600 GALR2O43603 387 aaPredicted RBP11.42□□□□□ -0.58
PTPRM-208ENST00000578600 ILDR1Q86SU0 546 aaPredicted RBP11.42□□□□□ -0.58
PTPRM-208ENST00000578600 P3H3Q8IVL6 736 aa11.42□□□□□ -0.58
PTPRM-208ENST00000578600 CLCN6P51797 869 aa11.41□□□□□ -0.58
PTPRM-208ENST00000578600 MKRN3Q13064 507 aaKnown RBP11.41□□□□□ -0.58
PTPRM-208ENST00000578600 KCNV2Q8TDN2 545 aa11.4□□□□□ -0.58
PTPRM-208ENST00000578600 NCKAP5LQ9HCH0 1330 aa11.37□□□□□ -0.59
PTPRM-208ENST00000578600 TRIM35Q9UPQ4 493 aa11.34□□□□□ -0.59
PTPRM-208ENST00000578600 CRISPLD2Q9H0B8 497 aa11.33□□□□□ -0.6
PTPRM-208ENST00000578600 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.32□□□□□ -0.65e-10■■■□□ 15.8
PTPRM-208ENST00000578600 PDE4AP27815 886 aa11.31□□□□□ -0.6
PTPRM-208ENST00000578600 MFSD10Q14728 455 aa11.31□□□□□ -0.6
PTPRM-208ENST00000578600 ATN1P54259 1190 aaPredicted RBP11.3□□□□□ -0.6
PTPRM-208ENST00000578600 E2F4Q16254 413 aa11.3□□□□□ -0.6
PTPRM-208ENST00000578600 ASTLQ6HA08 431 aaPredicted RBP11.29□□□□□ -0.6
PTPRM-208ENST00000578600 ARHGEF1Q92888 912 aaKnown RBP11.29□□□□□ -0.6
PTPRM-208ENST00000578600 LARP6Q9BRS8 491 aaKnown RBP11.29□□□□□ -0.6
PTPRM-208ENST00000578600 ATMINO43313 823 aaPredicted RBP11.28□□□□□ -0.6
PTPRM-208ENST00000578600 DPY19L2Q6NUT2 758 aa11.26□□□□□ -0.61
PTPRM-208ENST00000578600 PDCD7Q8N8D1 485 aaKnown RBP11.26□□□□□ -0.61
PTPRM-208ENST00000578600 IRX5P78411 483 aaPredicted RBP11.24□□□□□ -0.61
PTPRM-208ENST00000578600 DDX27Q96GQ7 796 aaKnown RBP11.24□□□□□ -0.61
PTPRM-208ENST00000578600 GABBR2O75899 941 aa11.22□□□□□ -0.61
PTPRM-208ENST00000578600 CAMK2BQ13554 666 aa11.22□□□□□ -0.61
PTPRM-208ENST00000578600 IER5LQ5T953 404 aa11.22□□□□□ -0.61
PTPRM-208ENST00000578600 ARIH1Q9Y4X5 557 aaPredicted RBP11.21□□□□□ -0.61
PTPRM-208ENST00000578600 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.19□□□□□ -0.62
PTPRM-208ENST00000578600 MICALL2Q8IY33 904 aa11.19□□□□□ -0.62
PTPRM-208ENST00000578600 OCEL1Q9H607 264 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms