RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 ERICH3Q5RHP9 1530 aa17.41■□□□□ 0.38
SS18-207ENST00000577636 BIVM-ERCC5R4GMW8 1640 aa17.39■□□□□ 0.38
SS18-207ENST00000577636 TTBK1Q5TCY1 1321 aaPredicted RBP17.36■□□□□ 0.37
SS18-207ENST00000577636 KIF13AQ9H1H9 1805 aa17.35■□□□□ 0.37
SS18-207ENST00000577636 ABCC10Q5T3U5 1492 aa17.32■□□□□ 0.36
SS18-207ENST00000577636 KDM4FA0A1W2PPD8 638 aa17.26■□□□□ 0.35
SS18-207ENST00000577636 RUSC2Q8N2Y8 1516 aa17.25■□□□□ 0.35
SS18-207ENST00000577636 IGF1RP08069 1367 aa17.23■□□□□ 0.35
SS18-207ENST00000577636 MAPKBP1O60336 1514 aa17.22■□□□□ 0.35
SS18-207ENST00000577636 ADCY10Q96PN6 1610 aa17.22■□□□□ 0.35
SS18-207ENST00000577636 KIAA0586Q9BVV6 1533 aa17.21■□□□□ 0.35
SS18-207ENST00000577636 DIP2BQ9P265 1576 aa17.21■□□□□ 0.35
SS18-207ENST00000577636 PTPRGP23470 1445 aa17.2■□□□□ 0.34
SS18-207ENST00000577636 TSPOAP1O95153 1857 aa17.19■□□□□ 0.34
SS18-207ENST00000577636 KDM6BO15054 1643 aa17.18■□□□□ 0.34
SS18-207ENST00000577636 KIF27Q86VH2 1401 aa17.18■□□□□ 0.34
SS18-207ENST00000577636 CARMIL1Q5VZK9 1371 aa17.14■□□□□ 0.33
SS18-207ENST00000577636 TNIKQ9UKE5 1360 aa17.12■□□□□ 0.33
SS18-207ENST00000577636 CARMIL2Q6F5E8 1435 aa17.11■□□□□ 0.33
SS18-207ENST00000577636 CUL7Q14999 1698 aa17.07■□□□□ 0.32
SS18-207ENST00000577636 ASXL2Q76L83 1435 aa17.07■□□□□ 0.32
SS18-207ENST00000577636 ILDR1Q86SU0 546 aaPredicted RBP17.07■□□□□ 0.32
SS18-207ENST00000577636 ABCC2Q92887 1545 aa17.05■□□□□ 0.32
SS18-207ENST00000577636 PLB1Q6P1J6 1458 aa17.04■□□□□ 0.32
SS18-207ENST00000577636 UACAQ9BZF9 1416 aa17.01■□□□□ 0.31
SS18-207ENST00000577636 IQGAP2Q13576 1575 aa16.98■□□□□ 0.31
SS18-207ENST00000577636 ADGRL1O94910 1474 aa16.97■□□□□ 0.31
SS18-207ENST00000577636 COL17A1Q9UMD9 1497 aaPredicted RBP16.96■□□□□ 0.31
SS18-207ENST00000577636 GLI2P10070 1586 aa16.95■□□□□ 0.3
SS18-207ENST00000577636 UHRF1BP1LA0JNW5 1464 aa16.95■□□□□ 0.3
SS18-207ENST00000577636 EPRSP07814 1512 aaKnown RBP16.94■□□□□ 0.3
SS18-207ENST00000577636 DISP1Q96F81 1524 aa16.94■□□□□ 0.3
SS18-207ENST00000577636 KCNH8Q96L42 1107 aa16.93■□□□□ 0.3
SS18-207ENST00000577636 PPRC1Q5VV67 1664 aaKnown RBP16.93■□□□□ 0.3
SS18-207ENST00000577636 TEX14Q8IWB6 1497 aa16.89■□□□□ 0.29
SS18-207ENST00000577636 RAPGEF2Q9Y4G8 1499 aa16.89■□□□□ 0.29
SS18-207ENST00000577636 KDM5BQ9UGL1 1544 aa16.89■□□□□ 0.29
SS18-207ENST00000577636 ZCCHC11Q5TAX3 1644 aaKnown RBP16.85■□□□□ 0.29
SS18-207ENST00000577636 UGGT2Q9NYU1 1516 aa16.85■□□□□ 0.29
SS18-207ENST00000577636 MAP3K4Q9Y6R4 1608 aa16.84■□□□□ 0.29
SS18-207ENST00000577636 ARID3CA6NKF2 412 aa16.83■□□□□ 0.28
SS18-207ENST00000577636 WDR7Q9Y4E6 1490 aa16.82■□□□□ 0.28
SS18-207ENST00000577636 CD109Q6YHK3 1445 aa16.82■□□□□ 0.28
SS18-207ENST00000577636 KIAA0556O60303 1618 aa16.81■□□□□ 0.28
SS18-207ENST00000577636 HECW2Q9P2P5 1572 aa16.8■□□□□ 0.28
SS18-207ENST00000577636 P3H3Q8IVL6 736 aa16.79■□□□□ 0.28
SS18-207ENST00000577636 FAM9AQ8IZU1 332 aaPredicted RBP16.77■□□□□ 0.28
SS18-207ENST00000577636 GOLGA3Q08378 1498 aa16.73■□□□□ 0.27
SS18-207ENST00000577636 MAGI3Q5TCQ9 1506 aa16.72■□□□□ 0.27
SS18-207ENST00000577636 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.7■□□□□ 0.26
SS18-207ENST00000577636 HNRNPUL2Q1KMD3 747 aaKnown RBP16.7■□□□□ 0.26
SS18-207ENST00000577636 ABCA8O94911 1581 aa16.68■□□□□ 0.26
SS18-207ENST00000577636 CFAP43Q8NDM7 1665 aa16.66■□□□□ 0.26
SS18-207ENST00000577636 RAPGEF3O95398 923 aa16.66■□□□□ 0.26
SS18-207ENST00000577636 RANGAP1P46060 587 aaPredicted RBP16.66■□□□□ 0.26
SS18-207ENST00000577636 ARID4BQ4LE39 1312 aaPredicted RBP16.66■□□□□ 0.26
SS18-207ENST00000577636 CTTNBP2Q8WZ74 1663 aa16.65■□□□□ 0.26
SS18-207ENST00000577636 KIF21BO75037 1637 aa16.63■□□□□ 0.25
SS18-207ENST00000577636 ATP10BO94823 1461 aa16.62■□□□□ 0.25
SS18-207ENST00000577636 FBXO41Q8TF61 875 aa16.62■□□□□ 0.25
SS18-207ENST00000577636 PLPPR3Q6T4P5 718 aa16.61■□□□□ 0.25
SS18-207ENST00000577636 PRXQ9BXM0 1461 aa16.61■□□□□ 0.25
SS18-207ENST00000577636 ARAP3Q8WWN8 1544 aa16.59■□□□□ 0.25
SS18-207ENST00000577636 PTPRMP28827 1452 aa16.56■□□□□ 0.24
SS18-207ENST00000577636 PHLDB1Q86UU1 1377 aa16.55■□□□□ 0.24
SS18-207ENST00000577636 CSRNP3Q8WYN3 585 aa16.55■□□□□ 0.24
SS18-207ENST00000577636 PLEKHD1A6NEE1 506 aa16.51■□□□□ 0.23
SS18-207ENST00000577636 ABCA9Q8IUA7 1624 aa16.49■□□□□ 0.23
SS18-207ENST00000577636 NEO1Q92859 1461 aa16.48■□□□□ 0.23
SS18-207ENST00000577636 HSPA2P54652 639 aa16.48■□□□□ 0.23
SS18-207ENST00000577636 ADAMTSL3P82987 1691 aa16.48■□□□□ 0.23
SS18-207ENST00000577636 MLECQ14165 292 aa16.47■□□□□ 0.23
SS18-207ENST00000577636 RAPGEF6Q8TEU7 1601 aa16.46■□□□□ 0.23
SS18-207ENST00000577636 FHOD3Q2V2M9 1422 aa16.45■□□□□ 0.22
SS18-207ENST00000577636 DENND4BO75064 1496 aaPredicted RBP16.43■□□□□ 0.22
SS18-207ENST00000577636 BCORL1Q5H9F3 1711 aa16.43■□□□□ 0.22
SS18-207ENST00000577636 MADDQ8WXG6 1647 aa16.43■□□□□ 0.22
SS18-207ENST00000577636 AKNAQ7Z591 1439 aa16.43■□□□□ 0.22
SS18-207ENST00000577636 NUP153P49790 1475 aaKnown RBP16.42■□□□□ 0.22
SS18-207ENST00000577636 EHMT2Q96KQ7 1210 aa16.42■□□□□ 0.22
SS18-207ENST00000577636 ATP1B4Q9UN42 357 aaPredicted RBP16.42■□□□□ 0.22
SS18-207ENST00000577636 PCF11O94913 1555 aaKnown RBP16.41■□□□□ 0.22
SS18-207ENST00000577636 SAMD9Q5K651 1589 aa16.41■□□□□ 0.22
SS18-207ENST00000577636 FRMPD1Q5SYB0 1578 aa16.4■□□□□ 0.22
SS18-207ENST00000577636 LMTK3Q96Q04 1460 aa16.4■□□□□ 0.22
SS18-207ENST00000577636 RIMS1Q86UR5 1692 aaKnown RBP16.38■□□□□ 0.21
SS18-207ENST00000577636 FANCAO15360 1455 aa16.38■□□□□ 0.21
SS18-207ENST00000577636 POGZQ7Z3K3 1410 aa16.37■□□□□ 0.21
SS18-207ENST00000577636 YEATS2Q9ULM3 1422 aa16.36■□□□□ 0.21
SS18-207ENST00000577636 CERKQ8TCT0 537 aa16.34■□□□□ 0.21
SS18-207ENST00000577636 MYT1LQ9UL68 1186 aa16.34■□□□□ 0.21
SS18-207ENST00000577636 ARHGEF40Q8TER5 1519 aa16.34■□□□□ 0.21
SS18-207ENST00000577636 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.33■□□□□ 0.2
SS18-207ENST00000577636 SCAPERQ9BY12 1400 aa16.31■□□□□ 0.2
SS18-207ENST00000577636 CEBPAP49715 358 aaPredicted RBP16.31■□□□□ 0.2
SS18-207ENST00000577636 RICTORQ6R327 1708 aa16.31■□□□□ 0.2
SS18-207ENST00000577636 ZFYVE16Q7Z3T8 1539 aa16.3■□□□□ 0.2
SS18-207ENST00000577636 UBTFP17480 764 aaKnown RBP16.29■□□□□ 0.2
SS18-207ENST00000577636 EFCAB2Q5VUJ9 269 aa16.28■□□□□ 0.2
SS18-207ENST00000577636 CFAP74Q9C0B2 1584 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms