RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 NBR1Q14596 966 aa11.05□□□□□ -0.64
VPS53-219ENST00000576019 RIMBP3CA6NJZ7 1639 aa11.05□□□□□ -0.64
VPS53-219ENST00000576019 RIMBP3BA6NNM3 1639 aa11.05□□□□□ -0.64
VPS53-219ENST00000576019 RIMBP3Q9UFD9 1639 aa11.05□□□□□ -0.64
VPS53-219ENST00000576019 THOC2Q8NI27 1593 aaKnown RBP11.04□□□□□ -0.64
VPS53-219ENST00000576019 SPOCK2Q92563 424 aa11.02□□□□□ -0.65
VPS53-219ENST00000576019 RGL2O15211 777 aa11.01□□□□□ -0.65
VPS53-219ENST00000576019 KLHL34Q8N239 644 aa11.01□□□□□ -0.65
VPS53-219ENST00000576019 BAZ1AQ9NRL2 1556 aaPredicted RBP10.98□□□□□ -0.65
VPS53-219ENST00000576019 OSCARQ8IYS5 282 aa10.97□□□□□ -0.65
VPS53-219ENST00000576019 SOCS7O14512 581 aa10.92□□□□□ -0.66
VPS53-219ENST00000576019 MYO15BQ96JP2 1530 aa10.92□□□□□ -0.66
VPS53-219ENST00000576019 RBM42Q9BTD8 480 aaKnown RBP10.91□□□□□ -0.66
VPS53-219ENST00000576019 LMTK3Q96Q04 1460 aa10.91□□□□□ -0.66
VPS53-219ENST00000576019 CHGAP10645 457 aaKnown RBP10.89□□□□□ -0.67
VPS53-219ENST00000576019 ERICH6Q7L0X2 663 aa10.88□□□□□ -0.67
VPS53-219ENST00000576019 ARHGEF11O15085 1522 aa10.88□□□□□ -0.67
VPS53-219ENST00000576019 TMEM132AQ24JP5 1023 aa10.85□□□□□ -0.67
VPS53-219ENST00000576019 HOMEZQ8IX15 550 aa10.84□□□□□ -0.67
VPS53-219ENST00000576019 NESP48681 1621 aa10.81□□□□□ -0.68
VPS53-219ENST00000576019 C14orf37Q86TY3 774 aa10.8□□□□□ -0.68
VPS53-219ENST00000576019 CYB5RLQ6IPT4 315 aa10.79□□□□□ -0.68
VPS53-219ENST00000576019 SPDYE2BA6NHP3 402 aa10.77□□□□□ -0.69
VPS53-219ENST00000576019 SPDYE6P0CI01 402 aa10.77□□□□□ -0.69
VPS53-219ENST00000576019 SPDYE2Q495Y8 402 aa10.77□□□□□ -0.69
VPS53-219ENST00000576019 PLCD3Q8N3E9 789 aa10.77□□□□□ -0.69
VPS53-219ENST00000576019 FBXO41Q8TF61 875 aa10.77□□□□□ -0.69
VPS53-219ENST00000576019 SMARCA2P51531 1590 aa10.75□□□□□ -0.69
VPS53-219ENST00000576019 AKT1S1Q96B36 256 aa10.74□□□□□ -0.69
VPS53-219ENST00000576019 ILDR2Q71H61 639 aa10.73□□□□□ -0.69
VPS53-219ENST00000576019 CIZ1Q9ULV3 898 aaPredicted RBP10.73□□□□□ -0.69
VPS53-219ENST00000576019 HS6ST3Q8IZP7 471 aa10.7□□□□□ -0.7
VPS53-219ENST00000576019 SCRIBQ14160 1630 aa10.69□□□□□ -0.7
VPS53-219ENST00000576019 ERCC6L2Q5T890 1561 aa10.69□□□□□ -0.7
VPS53-219ENST00000576019 ARAP1Q96P48 1450 aa10.68□□□□□ -0.7
VPS53-219ENST00000576019 STAG3Q9UJ98 1225 aa10.68□□□□□ -0.7
VPS53-219ENST00000576019 SSUH2Q9Y2M2 353 aa10.67□□□□□ -0.7
VPS53-219ENST00000576019 MIER1Q8N108 512 aa10.65□□□□□ -0.7
VPS53-219ENST00000576019 ZNF692Q9BU19 519 aaPredicted RBP10.65□□□□□ -0.7
VPS53-219ENST00000576019 KIF21AQ7Z4S6 1674 aa10.65□□□□□ -0.7
VPS53-219ENST00000576019 REM2Q8IYK8 340 aaPredicted RBP10.62□□□□□ -0.71
VPS53-219ENST00000576019 NCAPD3P42695 1498 aa10.61□□□□□ -0.71
VPS53-219ENST00000576019 KDM4FA0A1W2PPD8 638 aa10.6□□□□□ -0.71
VPS53-219ENST00000576019 NKX1-1Q15270 411 aaPredicted RBP10.59□□□□□ -0.71
VPS53-219ENST00000576019 WDR62O43379 1518 aa10.58□□□□□ -0.72
VPS53-219ENST00000576019 LAMC3Q9Y6N6 1575 aa10.56□□□□□ -0.72
VPS53-219ENST00000576019 RNF25Q96BH1 459 aaPredicted RBP10.56□□□□□ -0.72
VPS53-219ENST00000576019 GTPBP6O43824 516 aaPredicted RBP10.54□□□□□ -0.72
VPS53-219ENST00000576019 HECW2Q9P2P5 1572 aa10.52□□□□□ -0.72
VPS53-219ENST00000576019 SUPT5HO00267 1087 aaKnown RBP10.52□□□□□ -0.73
VPS53-219ENST00000576019 MRC2Q9UBG0 1479 aa10.52□□□□□ -0.73
VPS53-219ENST00000576019 DISP3Q9P2K9 1392 aa10.52□□□□□ -0.73
VPS53-219ENST00000576019 PDS5BQ9NTI5 1447 aa10.51□□□□□ -0.73
VPS53-219ENST00000576019 CHRDL2Q6WN34 429 aa10.51□□□□□ -0.73
VPS53-219ENST00000576019 PITPNM1O00562 1244 aa10.49□□□□□ -0.73
VPS53-219ENST00000576019 ZBTB47Q9UFB7 747 aaPredicted RBP10.48□□□□□ -0.73
VPS53-219ENST00000576019 SPDYE1Q8NFV5 336 aaPredicted RBP10.47□□□□□ -0.73
VPS53-219ENST00000576019 PLEKHG5O94827 1062 aa10.46□□□□□ -0.73
VPS53-219ENST00000576019 BRPF1P55201 1214 aaPredicted RBP10.45□□□□□ -0.74
VPS53-219ENST00000576019 PODXL2Q9NZ53 605 aa10.45□□□□□ -0.74
VPS53-219ENST00000576019 LMOD2Q6P5Q4 547 aa10.44□□□□□ -0.74
VPS53-219ENST00000576019 RSF1Q96T23 1441 aaPredicted RBP10.42□□□□□ -0.74
VPS53-219ENST00000576019 P3H3Q8IVL6 736 aa10.42□□□□□ -0.74
VPS53-219ENST00000576019 HMGXB3Q12766 1538 aa10.42□□□□□ -0.74
VPS53-219ENST00000576019 STK25O00506 426 aa10.41□□□□□ -0.74
VPS53-219ENST00000576019 RIOK3O14730 519 aaKnown RBP10.41□□□□□ -0.74
VPS53-219ENST00000576019 GSE1Q14687 1217 aa10.38□□□□□ -0.75
VPS53-219ENST00000576019 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.38□□□□□ -0.75
VPS53-219ENST00000576019 RANGAP1P46060 587 aaPredicted RBP10.37□□□□□ -0.75
VPS53-219ENST00000576019 POTEHQ6S545 545 aa10.37□□□□□ -0.75
VPS53-219ENST00000576019 CLEC11AQ9Y240 323 aa10.37□□□□□ -0.75
VPS53-219ENST00000576019 ATAD2BQ9ULI0 1458 aa10.36□□□□□ -0.75
VPS53-219ENST00000576019 FXR2P51116 673 aaKnown RBP eCLIP10.36□□□□□ -0.75
VPS53-219ENST00000576019 KCNV2Q8TDN2 545 aa10.35□□□□□ -0.75
VPS53-219ENST00000576019 SYNJ2O15056 1496 aa10.35□□□□□ -0.75
VPS53-219ENST00000576019 NEUROD2Q15784 382 aa10.34□□□□□ -0.75
VPS53-219ENST00000576019 PIP4P2Q8N4L2 257 aa10.33□□□□□ -0.76
VPS53-219ENST00000576019 SPATA31D1Q6ZQQ2 1576 aa10.33□□□□□ -0.76
VPS53-219ENST00000576019 VGFO15240 615 aaPredicted RBP10.3□□□□□ -0.76
VPS53-219ENST00000576019 PRR29P0C7W0 189 aa10.29□□□□□ -0.76
VPS53-219ENST00000576019 STK24Q9Y6E0 443 aa10.29□□□□□ -0.76
VPS53-219ENST00000576019 UBTFP17480 764 aaKnown RBP10.28□□□□□ -0.76
VPS53-219ENST00000576019 DCAF8Q5TAQ9 597 aa10.28□□□□□ -0.76
VPS53-219ENST00000576019 NUBP1P53384 320 aa10.27□□□□□ -0.77
VPS53-219ENST00000576019 BCL11BQ9C0K0 894 aaPredicted RBP10.27□□□□□ -0.77
VPS53-219ENST00000576019 RYDENQ9NUL5 291 aaKnown RBP10.27□□□□□ -0.77
VPS53-219ENST00000576019 DCAF1Q9Y4B6 1507 aa10.27□□□□□ -0.77
VPS53-219ENST00000576019 WDR70Q9NW82 654 aa10.26□□□□□ -0.77
VPS53-219ENST00000576019 ZC3H15Q8WU90 426 aaKnown RBP10.25□□□□□ -0.77
VPS53-219ENST00000576019 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.24□□□□□ -0.77
VPS53-219ENST00000576019 CADPS2Q86UW7 1296 aa10.24□□□□□ -0.77
VPS53-219ENST00000576019 ZFP91Q96JP5 570 aaPredicted RBP10.24□□□□□ -0.77
VPS53-219ENST00000576019 SLC24A3Q9HC58 644 aa10.24□□□□□ -0.77
VPS53-219ENST00000576019 ADGRL1O94910 1474 aa10.22□□□□□ -0.77
VPS53-219ENST00000576019 CHD1O14646 1710 aa10.21□□□□□ -0.77
VPS53-219ENST00000576019 KIF13AQ9H1H9 1805 aa10.21□□□□□ -0.77
VPS53-219ENST00000576019 PRKAR2AP13861 404 aaKnown RBP10.21□□□□□ -0.77
VPS53-219ENST00000576019 CEP164Q9UPV0 1460 aa10.2□□□□□ -0.78
VPS53-219ENST00000576019 TRIM26Q12899 539 aaPredicted RBP10.19□□□□□ -0.78
VPS53-219ENST00000576019 SMARCA4P51532 1647 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms