RNA–Protein interactions for RNA: ENST00000573521.1

PCDHGA9-201, Transcript of protocadherin gamma subfamily A, 9, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PCDHGA9, Length 4,605 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA9-201ENST00000573521 WDR43Q15061 677 aaKnown RBP eCLIP16.46■□□□□ 0.23
PCDHGA9-201ENST00000573521 ZNF777Q9ULD5 760 aaPredicted RBP16.46■□□□□ 0.22
PCDHGA9-201ENST00000573521 FBLN2P98095 1184 aa16.45■□□□□ 0.22
PCDHGA9-201ENST00000573521 CCER2I3L3R5 266 aa16.44■□□□□ 0.22
PCDHGA9-201ENST00000573521 HSP90AA1P07900 732 aaKnown RBP16.43■□□□□ 0.22
PCDHGA9-201ENST00000573521 BECN1Q14457 450 aa16.43■□□□□ 0.22
PCDHGA9-201ENST00000573521 PPM1GO15355 546 aaPredicted RBP16.42■□□□□ 0.22
PCDHGA9-201ENST00000573521 NPM2Q86SE8 214 aaKnown RBP16.41■□□□□ 0.22
PCDHGA9-201ENST00000573521 SMARCA2P51531 1590 aa16.41■□□□□ 0.22
PCDHGA9-201ENST00000573521 PPP4R2Q9NY27 417 aa16.38■□□□□ 0.21
PCDHGA9-201ENST00000573521 MROH2BQ7Z745 1585 aa16.36■□□□□ 0.21
PCDHGA9-201ENST00000573521 CCNB3Q8WWL7 1395 aa16.36■□□□□ 0.21
PCDHGA9-201ENST00000573521 VPS8Q8N3P4 1428 aa16.35■□□□□ 0.21
PCDHGA9-201ENST00000573521 CHMP4BQ9H444 224 aaKnown RBP16.31■□□□□ 0.2
PCDHGA9-201ENST00000573521 NPM1P06748 294 aaKnown RBP eCLIP16.3■□□□□ 0.2
PCDHGA9-201ENST00000573521 MYH16Q9H6N6 1097 aa16.29■□□□□ 0.2
PCDHGA9-201ENST00000573521 MS4A1P11836 297 aa16.28■□□□□ 0.2
PCDHGA9-201ENST00000573521 GOLGA6L22H0YM25 854 aa16.27■□□□□ 0.2
PCDHGA9-201ENST00000573521 PLEKHD1A6NEE1 506 aa16.26■□□□□ 0.19
PCDHGA9-201ENST00000573521 CHIC2Q9UKJ5 165 aa16.26■□□□□ 0.19
PCDHGA9-201ENST00000573521 ESF1Q9H501 851 aaKnown RBP16.26■□□□□ 0.19
PCDHGA9-201ENST00000573521 ARID4BQ4LE39 1312 aaPredicted RBP16.25■□□□□ 0.19
PCDHGA9-201ENST00000573521 CFAP53Q96M91 514 aa16.24■□□□□ 0.19
PCDHGA9-201ENST00000573521 WIZO95785 1651 aa16.23■□□□□ 0.19
PCDHGA9-201ENST00000573521 SETD5Q9C0A6 1442 aa16.23■□□□□ 0.19
PCDHGA9-201ENST00000573521 CFAP44Q96MT7 982 aa16.21■□□□□ 0.19
PCDHGA9-201ENST00000573521 SUPT16HQ9Y5B9 1047 aaKnown RBP16.19■□□□□ 0.18
PCDHGA9-201ENST00000573521 ARID3CA6NKF2 412 aa16.18■□□□□ 0.18
PCDHGA9-201ENST00000573521 CHMP7Q8WUX9 453 aaPredicted RBP16.18■□□□□ 0.18
PCDHGA9-201ENST00000573521 STAG3Q9UJ98 1225 aa16.18■□□□□ 0.18
PCDHGA9-201ENST00000573521 SMARCA4P51532 1647 aa16.17■□□□□ 0.18
PCDHGA9-201ENST00000573521 KNSTRNQ9Y448 316 aa16.17■□□□□ 0.18
PCDHGA9-201ENST00000573521 ATAD2BQ9ULI0 1458 aa16.16■□□□□ 0.18
PCDHGA9-201ENST00000573521 CFDP1Q9UEE9 299 aaPredicted RBP16.16■□□□□ 0.18
PCDHGA9-201ENST00000573521 NCLP19338 710 aaKnown RBP16.15■□□□□ 0.18
PCDHGA9-201ENST00000573521 NBR1Q14596 966 aa16.15■□□□□ 0.18
PCDHGA9-201ENST00000573521 RRP7BPQ9NSQ0 103 aa16.15■□□□□ 0.18
PCDHGA9-201ENST00000573521 TRIM44Q96DX7 344 aaPredicted RBP16.15■□□□□ 0.18
PCDHGA9-201ENST00000573521 CARMIL1Q5VZK9 1371 aa16.14■□□□□ 0.17
PCDHGA9-201ENST00000573521 PNNQ9H307 717 aaKnown RBP16.14■□□□□ 0.17
PCDHGA9-201ENST00000573521 TOP2AP11388 1531 aaKnown RBP16.14■□□□□ 0.17
PCDHGA9-201ENST00000573521 NOP58Q9Y2X3 529 aaKnown RBP16.14■□□□□ 0.17
PCDHGA9-201ENST00000573521 ARHGAP35Q9NRY4 1499 aa16.14■□□□□ 0.17
PCDHGA9-201ENST00000573521 CHGAP10645 457 aaKnown RBP16.13■□□□□ 0.17
PCDHGA9-201ENST00000573521 FMN1Q68DA7 1419 aa16.12■□□□□ 0.17
PCDHGA9-201ENST00000573521 CARD11Q9BXL7 1154 aa16.12■□□□□ 0.17
PCDHGA9-201ENST00000573521 ERCC6Q03468 1493 aa16.11■□□□□ 0.17
PCDHGA9-201ENST00000573521 KDM2AQ9Y2K7 1162 aa16.11■□□□□ 0.17
PCDHGA9-201ENST00000573521 CASC1Q6TDU7 716 aa16.1■□□□□ 0.17
PCDHGA9-201ENST00000573521 PDS5BQ9NTI5 1447 aa16.1■□□□□ 0.17
PCDHGA9-201ENST00000573521 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.09■□□□□ 0.17
PCDHGA9-201ENST00000573521 NUDCQ9Y266 331 aa16.08■□□□□ 0.17
PCDHGA9-201ENST00000573521 PTMSP20962 102 aa16.08■□□□□ 0.16
PCDHGA9-201ENST00000573521 CCDC88BA6NC98 1476 aa16.07■□□□□ 0.16
PCDHGA9-201ENST00000573521 HAP1P54257 671 aaPredicted RBP16.07■□□□□ 0.16
PCDHGA9-201ENST00000573521 SOGA1O94964 1423 aa16.06■□□□□ 0.16
PCDHGA9-201ENST00000573521 ROCK2O75116 1388 aaKnown RBP16.05■□□□□ 0.16
PCDHGA9-201ENST00000573521 SALL2Q9Y467 1007 aaPredicted RBP16.05■□□□□ 0.16
PCDHGA9-201ENST00000573521 L1TD1Q5T7N2 865 aaKnown RBP16.04■□□□□ 0.16
PCDHGA9-201ENST00000573521 TMF1P82094 1093 aa16.04■□□□□ 0.16
PCDHGA9-201ENST00000573521 RALBP1Q15311 655 aa16.03■□□□□ 0.16
PCDHGA9-201ENST00000573521 CUX2O14529 1486 aa16.03■□□□□ 0.16
PCDHGA9-201ENST00000573521 TNNT2P45379 298 aaPredicted RBP16.03■□□□□ 0.16
PCDHGA9-201ENST00000573521 NCAPD3P42695 1498 aa16.02■□□□□ 0.15
PCDHGA9-201ENST00000573521 CADPSQ9ULU8 1353 aa16.02■□□□□ 0.15
PCDHGA9-201ENST00000573521 TCERG1O14776 1098 aaKnown RBP16.01■□□□□ 0.15
PCDHGA9-201ENST00000573521 PDE3BQ13370 1112 aa16.01■□□□□ 0.15
PCDHGA9-201ENST00000573521 EIF4G1Q04637 1599 aaKnown RBP16■□□□□ 0.15
PCDHGA9-201ENST00000573521 PHLDB1Q86UU1 1377 aa16■□□□□ 0.15
PCDHGA9-201ENST00000573521 IRX6P78412 446 aaPredicted RBP15.99■□□□□ 0.15
PCDHGA9-201ENST00000573521 FTSJ3Q8IY81 847 aaKnown RBP15.98■□□□□ 0.15
PCDHGA9-201ENST00000573521 MAPK8IP3Q9UPT6 1336 aa15.97■□□□□ 0.15
PCDHGA9-201ENST00000573521 SIN3AQ96ST3 1273 aa15.96■□□□□ 0.15
PCDHGA9-201ENST00000573521 KANK1Q14678 1352 aa15.96■□□□□ 0.15
PCDHGA9-201ENST00000573521 ABCC8Q09428 1581 aa15.96■□□□□ 0.15
PCDHGA9-201ENST00000573521 PPP1R15AO75807 674 aaPredicted RBP15.95■□□□□ 0.14
PCDHGA9-201ENST00000573521 HIRIP3Q9BW71 556 aaPredicted RBP15.95■□□□□ 0.14
PCDHGA9-201ENST00000573521 RAB3GAP2Q9H2M9 1393 aa15.95■□□□□ 0.14
PCDHGA9-201ENST00000573521 RSPH4AQ5TD94 716 aa15.95■□□□□ 0.14
PCDHGA9-201ENST00000573521 KTN1Q86UP2 1357 aaKnown RBP15.95■□□□□ 0.14
PCDHGA9-201ENST00000573521 RBM19Q9Y4C8 960 aaKnown RBP15.94■□□□□ 0.14
PCDHGA9-201ENST00000573521 CARMIL2Q6F5E8 1435 aa15.91■□□□□ 0.14
PCDHGA9-201ENST00000573521 USP35Q9P2H5 1018 aa15.91■□□□□ 0.14
PCDHGA9-201ENST00000573521 BCL11AQ9H165 835 aa15.9■□□□□ 0.14
PCDHGA9-201ENST00000573521 RAPGEF2Q9Y4G8 1499 aa15.9■□□□□ 0.14
PCDHGA9-201ENST00000573521 CHMP4AQ9BY43 222 aa15.9■□□□□ 0.14
PCDHGA9-201ENST00000573521 HSPA5P11021 654 aaKnown RBP15.89■□□□□ 0.13
PCDHGA9-201ENST00000573521 ANKRD30AQ9BXX3 1397 aa15.88■□□□□ 0.13
PCDHGA9-201ENST00000573521 NGEFQ8N5V2 710 aa15.88■□□□□ 0.13
PCDHGA9-201ENST00000573521 BICRAQ9NZM4 1560 aa15.87■□□□□ 0.13
PCDHGA9-201ENST00000573521 CALD1Q05682 793 aaKnown RBP15.87■□□□□ 0.13
PCDHGA9-201ENST00000573521 NRDCO43847 1150 aa15.87■□□□□ 0.13
PCDHGA9-201ENST00000573521 HSCBQ8IWL3 235 aa15.86■□□□□ 0.13
PCDHGA9-201ENST00000573521 ZRSR1Q15695 479 aaKnown RBP15.86■□□□□ 0.13
PCDHGA9-201ENST00000573521 IPO8O15397 1037 aaKnown RBP15.85■□□□□ 0.13
PCDHGA9-201ENST00000573521 RGL3Q3MIN7 710 aa15.85■□□□□ 0.13
PCDHGA9-201ENST00000573521 GOLGA6L6A8MZA4 724 aa15.85■□□□□ 0.13
PCDHGA9-201ENST00000573521 PTMAP06454 111 aaKnown RBP15.85■□□□□ 0.13
PCDHGA9-201ENST00000573521 EIF3AQ14152 1382 aaKnown RBP15.85■□□□□ 0.13
PCDHGA9-201ENST00000573521 HDGFP51858 240 aaKnown RBP15.83■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms