RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 ABCC10Q5T3U5 1492 aa20.07■□□□□ 0.8
VPS53-207ENST00000570510 KDM6BO15054 1643 aa20.01■□□□□ 0.79
VPS53-207ENST00000570510 ERICH3Q5RHP9 1530 aa19.98■□□□□ 0.79
VPS53-207ENST00000570510 MAPKBP1O60336 1514 aa19.97■□□□□ 0.79
VPS53-207ENST00000570510 DIP2BQ9P265 1576 aa19.95■□□□□ 0.78
VPS53-207ENST00000570510 TSPOAP1O95153 1857 aa19.89■□□□□ 0.77
VPS53-207ENST00000570510 TOP2BQ02880 1626 aa19.89■□□□□ 0.77
VPS53-207ENST00000570510 SUPT5HO00267 1087 aaKnown RBP19.88■□□□□ 0.77
VPS53-207ENST00000570510 TTBK1Q5TCY1 1321 aaPredicted RBP19.87■□□□□ 0.77
VPS53-207ENST00000570510 ADCY10Q96PN6 1610 aa19.87■□□□□ 0.77
VPS53-207ENST00000570510 BIVM-ERCC5R4GMW8 1640 aa19.85■□□□□ 0.77
VPS53-207ENST00000570510 RUSC2Q8N2Y8 1516 aa19.83■□□□□ 0.77
VPS53-207ENST00000570510 PTPRGP23470 1445 aa19.77■□□□□ 0.76
VPS53-207ENST00000570510 ADGRL1O94910 1474 aa19.77■□□□□ 0.76
VPS53-207ENST00000570510 KIAA0586Q9BVV6 1533 aa19.76■□□□□ 0.75
VPS53-207ENST00000570510 PLB1Q6P1J6 1458 aa19.7■□□□□ 0.74
VPS53-207ENST00000570510 CARMIL2Q6F5E8 1435 aa19.69■□□□□ 0.74
VPS53-207ENST00000570510 ASXL2Q76L83 1435 aa19.69■□□□□ 0.74
VPS53-207ENST00000570510 ABCC2Q92887 1545 aa19.67■□□□□ 0.74
VPS53-207ENST00000570510 HECW2Q9P2P5 1572 aa19.66■□□□□ 0.74
VPS53-207ENST00000570510 TNIKQ9UKE5 1360 aa19.66■□□□□ 0.74
VPS53-207ENST00000570510 IGF1RP08069 1367 aa19.63■□□□□ 0.73
VPS53-207ENST00000570510 GLI2P10070 1586 aa19.61■□□□□ 0.73
VPS53-207ENST00000570510 KIF27Q86VH2 1401 aa19.6■□□□□ 0.73
VPS53-207ENST00000570510 TEX14Q8IWB6 1497 aa19.6■□□□□ 0.73
VPS53-207ENST00000570510 CUL7Q14999 1698 aa19.57■□□□□ 0.72
VPS53-207ENST00000570510 COL17A1Q9UMD9 1497 aaPredicted RBP19.56■□□□□ 0.72
VPS53-207ENST00000570510 UACAQ9BZF9 1416 aa19.56■□□□□ 0.72
VPS53-207ENST00000570510 PPRC1Q5VV67 1664 aaKnown RBP19.56■□□□□ 0.72
VPS53-207ENST00000570510 FBXO41Q8TF61 875 aa19.55■□□□□ 0.72
VPS53-207ENST00000570510 CARMIL1Q5VZK9 1371 aa19.54■□□□□ 0.72
VPS53-207ENST00000570510 EPRSP07814 1512 aaKnown RBP19.53■□□□□ 0.72
VPS53-207ENST00000570510 UHRF1BP1LA0JNW5 1464 aa19.53■□□□□ 0.72
VPS53-207ENST00000570510 IQGAP2Q13576 1575 aa19.47■□□□□ 0.71
VPS53-207ENST00000570510 MAP3K4Q9Y6R4 1608 aa19.47■□□□□ 0.71
VPS53-207ENST00000570510 KDM5BQ9UGL1 1544 aa19.45■□□□□ 0.7
VPS53-207ENST00000570510 KCNH8Q96L42 1107 aa19.43■□□□□ 0.7
VPS53-207ENST00000570510 CD109Q6YHK3 1445 aa19.39■□□□□ 0.69
VPS53-207ENST00000570510 WDR7Q9Y4E6 1490 aa19.39■□□□□ 0.69
VPS53-207ENST00000570510 ZCCHC11Q5TAX3 1644 aaKnown RBP19.39■□□□□ 0.69
VPS53-207ENST00000570510 DISP1Q96F81 1524 aa19.38■□□□□ 0.69
VPS53-207ENST00000570510 FAM9AQ8IZU1 332 aaPredicted RBP19.32■□□□□ 0.68
VPS53-207ENST00000570510 MAGI3Q5TCQ9 1506 aa19.31■□□□□ 0.68
VPS53-207ENST00000570510 UGGT2Q9NYU1 1516 aa19.29■□□□□ 0.68
VPS53-207ENST00000570510 KIAA0556O60303 1618 aa19.27■□□□□ 0.68
VPS53-207ENST00000570510 KIF21BO75037 1637 aa19.27■□□□□ 0.68
VPS53-207ENST00000570510 ARID4BQ4LE39 1312 aaPredicted RBP19.26■□□□□ 0.67
VPS53-207ENST00000570510 RAPGEF2Q9Y4G8 1499 aa19.26■□□□□ 0.67
VPS53-207ENST00000570510 CFAP43Q8NDM7 1665 aa19.26■□□□□ 0.67
VPS53-207ENST00000570510 PTPRMP28827 1452 aa19.23■□□□□ 0.67
VPS53-207ENST00000570510 LMTK3Q96Q04 1460 aa19.22■□□□□ 0.67
VPS53-207ENST00000570510 ARID3CA6NKF2 412 aa19.19■□□□□ 0.66
VPS53-207ENST00000570510 GOLGA3Q08378 1498 aa19.19■□□□□ 0.66
VPS53-207ENST00000570510 ARAP3Q8WWN8 1544 aa19.18■□□□□ 0.66
VPS53-207ENST00000570510 RAPGEF3O95398 923 aa19.16■□□□□ 0.66
VPS53-207ENST00000570510 PHLDB1Q86UU1 1377 aa19.16■□□□□ 0.66
VPS53-207ENST00000570510 PLPPR3Q6T4P5 718 aa19.15■□□□□ 0.66
VPS53-207ENST00000570510 PCF11O94913 1555 aaKnown RBP19.13■□□□□ 0.65
VPS53-207ENST00000570510 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.11■□□□□ 0.65
VPS53-207ENST00000570510 HNRNPUL2Q1KMD3 747 aaKnown RBP19.11■□□□□ 0.65
VPS53-207ENST00000570510 ADAMTSL3P82987 1691 aa19.11■□□□□ 0.65
VPS53-207ENST00000570510 ABCA8O94911 1581 aa19.1■□□□□ 0.65
VPS53-207ENST00000570510 HSPA2P54652 639 aa19.09■□□□□ 0.65
VPS53-207ENST00000570510 CERKQ8TCT0 537 aa19.08■□□□□ 0.64
VPS53-207ENST00000570510 P3H3Q8IVL6 736 aa19.06■□□□□ 0.64
VPS53-207ENST00000570510 DISP3Q9P2K9 1392 aa19.06■□□□□ 0.64
VPS53-207ENST00000570510 MADDQ8WXG6 1647 aa19.04■□□□□ 0.64
VPS53-207ENST00000570510 CTTNBP2Q8WZ74 1663 aa19.03■□□□□ 0.64
VPS53-207ENST00000570510 NEO1Q92859 1461 aa19.03■□□□□ 0.64
VPS53-207ENST00000570510 BCORL1Q5H9F3 1711 aa19.03■□□□□ 0.64
VPS53-207ENST00000570510 ATP10BO94823 1461 aa19.01■□□□□ 0.63
VPS53-207ENST00000570510 SOCS7O14512 581 aa19■□□□□ 0.63
VPS53-207ENST00000570510 POGZQ7Z3K3 1410 aa19■□□□□ 0.63
VPS53-207ENST00000570510 ABCA9Q8IUA7 1624 aa18.99■□□□□ 0.63
VPS53-207ENST00000570510 RIMS1Q86UR5 1692 aaKnown RBP18.97■□□□□ 0.63
VPS53-207ENST00000570510 MLECQ14165 292 aa18.95■□□□□ 0.62
VPS53-207ENST00000570510 ILDR2Q71H61 639 aa18.95■□□□□ 0.62
VPS53-207ENST00000570510 DENND4BO75064 1496 aaPredicted RBP18.93■□□□□ 0.62
VPS53-207ENST00000570510 FANCAO15360 1455 aa18.92■□□□□ 0.62
VPS53-207ENST00000570510 AKNAQ7Z591 1439 aa18.91■□□□□ 0.62
VPS53-207ENST00000570510 PLEKHD1A6NEE1 506 aa18.91■□□□□ 0.62
VPS53-207ENST00000570510 DMRT2Q9Y5R5 561 aa18.9■□□□□ 0.62
VPS53-207ENST00000570510 ARHGEF40Q8TER5 1519 aa18.89■□□□□ 0.61
VPS53-207ENST00000570510 FRMPD1Q5SYB0 1578 aa18.89■□□□□ 0.61
VPS53-207ENST00000570510 RANGAP1P46060 587 aaPredicted RBP18.85■□□□□ 0.61
VPS53-207ENST00000570510 PRXQ9BXM0 1461 aa18.84■□□□□ 0.61
VPS53-207ENST00000570510 FHOD3Q2V2M9 1422 aa18.83■□□□□ 0.61
VPS53-207ENST00000570510 RAPGEF6Q8TEU7 1601 aa18.83■□□□□ 0.61
VPS53-207ENST00000570510 ZFYVE16Q7Z3T8 1539 aa18.81■□□□□ 0.6
VPS53-207ENST00000570510 EFCAB5A4FU69 1503 aa18.8■□□□□ 0.6
VPS53-207ENST00000570510 YEATS2Q9ULM3 1422 aa18.8■□□□□ 0.6
VPS53-207ENST00000570510 CFAP74Q9C0B2 1584 aa18.79■□□□□ 0.6
VPS53-207ENST00000570510 MAGI2Q86UL8 1455 aa18.78■□□□□ 0.6
VPS53-207ENST00000570510 RICTORQ6R327 1708 aa18.78■□□□□ 0.6
VPS53-207ENST00000570510 CEBPAP49715 358 aaPredicted RBP18.77■□□□□ 0.6
VPS53-207ENST00000570510 MYT1LQ9UL68 1186 aa18.76■□□□□ 0.59
VPS53-207ENST00000570510 NUP153P49790 1475 aaKnown RBP18.76■□□□□ 0.59
VPS53-207ENST00000570510 FER1L4A9Z1Z3 1794 aa18.75■□□□□ 0.59
VPS53-207ENST00000570510 ZMYM4Q5VZL5 1548 aa18.74■□□□□ 0.59
VPS53-207ENST00000570510 TTC37Q6PGP7 1564 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms