RNA–Protein interactions for RNA: ENST00000568993.5

SNX20-204, Transcript of sorting nexin 20, humanhuman

TSL 1 (best)

Gene SNX20, Length 2,003 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX20-204ENST00000568993 FHAD1B1AJZ9 1412 aa23.97■■□□□ 1.43
SNX20-204ENST00000568993 EFCAB5A4FU69 1503 aa23.96■■□□□ 1.43
SNX20-204ENST00000568993 ZNF608Q9ULD9 1512 aaPredicted RBP23.94■■□□□ 1.42
SNX20-204ENST00000568993 ADAMTS12P58397 1594 aa23.94■■□□□ 1.42
SNX20-204ENST00000568993 TTBK1Q5TCY1 1321 aaPredicted RBP23.91■■□□□ 1.42
SNX20-204ENST00000568993 EIF4G3O43432 1585 aaKnown RBP23.86■■□□□ 1.41
SNX20-204ENST00000568993 MAP3K1Q13233 1512 aa23.86■■□□□ 1.41
SNX20-204ENST00000568993 SAMD9Q5K651 1589 aa23.83■■□□□ 1.41
SNX20-204ENST00000568993 FHOD3Q2V2M9 1422 aa23.78■■□□□ 1.4
SNX20-204ENST00000568993 KANK4Q5T7N3 995 aaPredicted RBP23.77■■□□□ 1.4
SNX20-204ENST00000568993 SNAPC4Q5SXM2 1469 aa23.77■■□□□ 1.4
SNX20-204ENST00000568993 TIAM1Q13009 1591 aa23.76■■□□□ 1.39
SNX20-204ENST00000568993 MAGI1Q96QZ7 1491 aaPredicted RBP23.76■■□□□ 1.39
SNX20-204ENST00000568993 P3H3Q8IVL6 736 aa23.74■■□□□ 1.39
SNX20-204ENST00000568993 FMN1Q68DA7 1419 aa23.74■■□□□ 1.39
SNX20-204ENST00000568993 PCF11O94913 1555 aaKnown RBP23.74■■□□□ 1.39
SNX20-204ENST00000568993 FYCO1Q9BQS8 1478 aa23.74■■□□□ 1.39
SNX20-204ENST00000568993 CASKIN1Q8WXD9 1431 aa23.73■■□□□ 1.39
SNX20-204ENST00000568993 IQGAP2Q13576 1575 aa23.73■■□□□ 1.39
SNX20-204ENST00000568993 ZEB1P37275 1124 aaPredicted RBP23.73■■□□□ 1.39
SNX20-204ENST00000568993 GRIN2AQ12879 1464 aa23.69■■□□□ 1.38
SNX20-204ENST00000568993 CFAP43Q8NDM7 1665 aa23.69■■□□□ 1.38
SNX20-204ENST00000568993 KIAA0586Q9BVV6 1533 aa23.66■■□□□ 1.38
SNX20-204ENST00000568993 SYNJ2O15056 1496 aa23.66■■□□□ 1.38
SNX20-204ENST00000568993 UGGT2Q9NYU1 1516 aa23.65■■□□□ 1.38
SNX20-204ENST00000568993 LRRC9Q6ZRR7 1453 aa23.65■■□□□ 1.38
SNX20-204ENST00000568993 RRBP1Q9P2E9 1410 aaKnown RBP23.63■■□□□ 1.37
SNX20-204ENST00000568993 CHMP7Q8WUX9 453 aaPredicted RBP23.56■■□□□ 1.36
SNX20-204ENST00000568993 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.54■■□□□ 1.36
SNX20-204ENST00000568993 CEP170Q5SW79 1584 aa23.53■■□□□ 1.36
SNX20-204ENST00000568993 NUP160Q12769 1436 aa23.53■■□□□ 1.36
SNX20-204ENST00000568993 CCNB3Q8WWL7 1395 aa23.51■■□□□ 1.35
SNX20-204ENST00000568993 HNRNPUL2Q1KMD3 747 aaKnown RBP23.5■■□□□ 1.35
SNX20-204ENST00000568993 ATP1B4Q9UN42 357 aaPredicted RBP23.5■■□□□ 1.35
SNX20-204ENST00000568993 DISP1Q96F81 1524 aa23.5■■□□□ 1.35
SNX20-204ENST00000568993 LRRIQ1Q96JM4 1722 aa23.49■■□□□ 1.35
SNX20-204ENST00000568993 CCER1Q8TC90 406 aaPredicted RBP23.49■■□□□ 1.35
SNX20-204ENST00000568993 KIAA0556O60303 1618 aa23.49■■□□□ 1.35
SNX20-204ENST00000568993 CCDC18Q5T9S5 1454 aa23.44■■□□□ 1.34
SNX20-204ENST00000568993 HECW1Q76N89 1606 aa23.44■■□□□ 1.34
SNX20-204ENST00000568993 PHLDB1Q86UU1 1377 aa23.44■■□□□ 1.34
SNX20-204ENST00000568993 FBLN2P98095 1184 aa23.42■■□□□ 1.34
SNX20-204ENST00000568993 MTUS2Q5JR59 1369 aa23.37■■□□□ 1.33
SNX20-204ENST00000568993 EHBP1L1Q8N3D4 1523 aa23.36■■□□□ 1.33
SNX20-204ENST00000568993 EPRSP07814 1512 aaKnown RBP23.36■■□□□ 1.33
SNX20-204ENST00000568993 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.35■■□□□ 1.33
SNX20-204ENST00000568993 JPH4Q96JJ6 628 aa23.35■■□□□ 1.33
SNX20-204ENST00000568993 CARMIL2Q6F5E8 1435 aa23.33■■□□□ 1.33
SNX20-204ENST00000568993 SUPT6HQ7KZ85 1726 aaKnown RBP23.31■■□□□ 1.32
SNX20-204ENST00000568993 MAGI3Q5TCQ9 1506 aa23.29■■□□□ 1.32
SNX20-204ENST00000568993 RAPGEF6Q8TEU7 1601 aa23.29■■□□□ 1.32
SNX20-204ENST00000568993 CHD1O14646 1710 aa23.29■■□□□ 1.32
SNX20-204ENST00000568993 ARHGEF11O15085 1522 aa23.29■■□□□ 1.32
SNX20-204ENST00000568993 NCOA2Q15596 1464 aa23.28■■□□□ 1.32
SNX20-204ENST00000568993 FGD6Q6ZV73 1430 aa23.26■■□□□ 1.31
SNX20-204ENST00000568993 NUP153P49790 1475 aaKnown RBP23.26■■□□□ 1.31
SNX20-204ENST00000568993 CDK13Q14004 1512 aaKnown RBP23.25■■□□□ 1.31
SNX20-204ENST00000568993 MYOM3Q5VTT5 1437 aa23.23■■□□□ 1.31
SNX20-204ENST00000568993 FAM50AQ14320 339 aaKnown RBP23.2■■□□□ 1.3
SNX20-204ENST00000568993 SHROOM2Q13796 1616 aa23.17■■□□□ 1.3
SNX20-204ENST00000568993 CLSPNQ9HAW4 1339 aa23.17■■□□□ 1.3
SNX20-204ENST00000568993 PLB1Q6P1J6 1458 aa23.16■■□□□ 1.3
SNX20-204ENST00000568993 ITGAEP38570 1179 aa23.16■■□□□ 1.3
SNX20-204ENST00000568993 PRG4Q92954 1404 aaPredicted RBP23.15■■□□□ 1.3
SNX20-204ENST00000568993 ABCA8O94911 1581 aa23.15■■□□□ 1.3
SNX20-204ENST00000568993 DHX57Q6P158 1386 aaKnown RBP23.14■■□□□ 1.3
SNX20-204ENST00000568993 CDK11AQ9UQ88 783 aaPredicted RBP23.13■■□□□ 1.29
SNX20-204ENST00000568993 SETD5Q9C0A6 1442 aa23.12■■□□□ 1.29
SNX20-204ENST00000568993 TCOF1Q13428 1488 aaKnown RBP23.11■■□□□ 1.29
SNX20-204ENST00000568993 PTPN23Q9H3S7 1636 aa23.1■■□□□ 1.29
SNX20-204ENST00000568993 MIA2Q96PC5 1412 aa23.1■■□□□ 1.29
SNX20-204ENST00000568993 RAB3GAP2Q9H2M9 1393 aa23.1■■□□□ 1.29
SNX20-204ENST00000568993 ARID3CA6NKF2 412 aa23.07■■□□□ 1.28
SNX20-204ENST00000568993 TROQ12816 1431 aaPredicted RBP23.06■■□□□ 1.28
SNX20-204ENST00000568993 PTPRGP23470 1445 aa23.05■■□□□ 1.28
SNX20-204ENST00000568993 CLASP1Q7Z460 1538 aa23.05■■□□□ 1.28
SNX20-204ENST00000568993 ADCY10Q96PN6 1610 aa23.02■■□□□ 1.28
SNX20-204ENST00000568993 PTPRKQ15262 1439 aa23.01■■□□□ 1.27
SNX20-204ENST00000568993 PELP1Q8IZL8 1130 aaKnown RBP23.01■■□□□ 1.27
SNX20-204ENST00000568993 ATP10BO94823 1461 aa23■■□□□ 1.27
SNX20-204ENST00000568993 HFM1A2PYH4 1435 aa22.98■■□□□ 1.27
SNX20-204ENST00000568993 UACAQ9BZF9 1416 aa22.94■■□□□ 1.26
SNX20-204ENST00000568993 ERCC6L2Q5T890 1561 aa22.93■■□□□ 1.26
SNX20-204ENST00000568993 PLEKHD1A6NEE1 506 aa22.92■■□□□ 1.26
SNX20-204ENST00000568993 ITSN2Q9NZM3 1697 aa22.91■■□□□ 1.26
SNX20-204ENST00000568993 KIF14Q15058 1648 aa22.91■■□□□ 1.26
SNX20-204ENST00000568993 NAIPQ13075 1403 aa22.91■■□□□ 1.26
SNX20-204ENST00000568993 AKNAQ7Z591 1439 aa22.91■■□□□ 1.26
SNX20-204ENST00000568993 GPATCH8Q9UKJ3 1502 aaKnown RBP22.89■■□□□ 1.26
SNX20-204ENST00000568993 MAPKBP1O60336 1514 aa22.89■■□□□ 1.25
SNX20-204ENST00000568993 ABCC2Q92887 1545 aa22.86■■□□□ 1.25
SNX20-204ENST00000568993 ABCC10Q5T3U5 1492 aa22.86■■□□□ 1.25
SNX20-204ENST00000568993 DNMT1P26358 1616 aaKnown RBP22.85■■□□□ 1.25
SNX20-204ENST00000568993 GCC2Q8IWJ2 1684 aa22.84■■□□□ 1.25
SNX20-204ENST00000568993 DAPK1P53355 1430 aa22.82■■□□□ 1.24
SNX20-204ENST00000568993 UHRF1BP1LA0JNW5 1464 aa22.82■■□□□ 1.24
SNX20-204ENST00000568993 CFDP1Q9UEE9 299 aaPredicted RBP22.81■■□□□ 1.24
SNX20-204ENST00000568993 ROCK1Q13464 1354 aa22.81■■□□□ 1.24
SNX20-204ENST00000568993 ABCC5O15440 1437 aa22.8■■□□□ 1.24
SNX20-204ENST00000568993 CDC42BPAQ5VT25 1732 aa22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms