RNA–Protein interactions for RNA: ENST00000567654.1

SF3B3-210, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 334 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-210ENST00000567654 RB1CC1Q8TDY2 1594 aa10.48□□□□□ -0.73
SF3B3-210ENST00000567654 NUBP1P53384 320 aa10.47□□□□□ -0.73
SF3B3-210ENST00000567654 RASEFQ8IZ41 740 aa10.45□□□□□ -0.74
SF3B3-210ENST00000567654 NPM1P06748 294 aaKnown RBP eCLIP10.43□□□□□ -0.74
SF3B3-210ENST00000567654 CIZ1Q9ULV3 898 aaPredicted RBP10.43□□□□□ -0.74
SF3B3-210ENST00000567654 PKD2Q13563 968 aa10.41□□□□□ -0.74
SF3B3-210ENST00000567654 DCAF8Q5TAQ9 597 aa10.39□□□□□ -0.75
SF3B3-210ENST00000567654 TSPYL2Q9H2G4 693 aaPredicted RBP10.39□□□□□ -0.75
SF3B3-210ENST00000567654 FAM212AQ96EL1 285 aa10.35□□□□□ -0.75
SF3B3-210ENST00000567654 ECM2O94769 699 aaPredicted RBP10.31□□□□□ -0.76
SF3B3-210ENST00000567654 CD44P16070 742 aaKnown RBP10.31□□□□□ -0.76
SF3B3-210ENST00000567654 GSE1Q14687 1217 aa10.3□□□□□ -0.76
SF3B3-210ENST00000567654 PYGBP11216 843 aa10.29□□□□□ -0.76
SF3B3-210ENST00000567654 ZRANB1Q9UGI0 708 aa10.27□□□□□ -0.77
SF3B3-210ENST00000567654 BICRAQ9NZM4 1560 aa10.26□□□□□ -0.77
SF3B3-210ENST00000567654 C19orf67A6NJJ6 358 aa10.26□□□□□ -0.77
SF3B3-210ENST00000567654 HAX1O00165 279 aa10.26□□□□□ -0.77
SF3B3-210ENST00000567654 EVX2Q03828 476 aa10.26□□□□□ -0.77
SF3B3-210ENST00000567654 SP7Q8TDD2 431 aaPredicted RBP10.26□□□□□ -0.77
SF3B3-210ENST00000567654 RGL2O15211 777 aa10.25□□□□□ -0.77
SF3B3-210ENST00000567654 CCDC61Q9Y6R9 512 aa10.25□□□□□ -0.77
SF3B3-210ENST00000567654 PAK3O75914 559 aaPredicted RBP10.24□□□□□ -0.77
SF3B3-210ENST00000567654 PHF12Q96QT6 1004 aa10.23□□□□□ -0.77
SF3B3-210ENST00000567654 SUPT5HO00267 1087 aaKnown RBP10.22□□□□□ -0.77
SF3B3-210ENST00000567654 RNF25Q96BH1 459 aaPredicted RBP10.21□□□□□ -0.77
SF3B3-210ENST00000567654 CECR2Q9BXF3 1484 aa10.18□□□□□ -0.78
SF3B3-210ENST00000567654 TRIM41Q8WV44 630 aa10.16□□□□□ -0.78
SF3B3-210ENST00000567654 MAP3K13O43283 966 aa10.15□□□□□ -0.78
SF3B3-210ENST00000567654 CHRM1P11229 460 aaPredicted RBP10.14□□□□□ -0.79
SF3B3-210ENST00000567654 KIF12Q96FN5 646 aa10.14□□□□□ -0.79
SF3B3-210ENST00000567654 PCDHB8Q9UN66 801 aa10.14□□□□□ -0.79
SF3B3-210ENST00000567654 PCDHB13Q9Y5F0 798 aa10.14□□□□□ -0.79
SF3B3-210ENST00000567654 MROH2BQ7Z745 1585 aa10.14□□□□□ -0.79
SF3B3-210ENST00000567654 ZNF579Q8NAF0 562 aaKnown RBP10.13□□□□□ -0.79
SF3B3-210ENST00000567654 WIZO95785 1651 aa10.12□□□□□ -0.79
SF3B3-210ENST00000567654 RSF1Q96T23 1441 aaPredicted RBP10.12□□□□□ -0.79
SF3B3-210ENST00000567654 RIOK3O14730 519 aaKnown RBP10.1□□□□□ -0.79
SF3B3-210ENST00000567654 IFNL1Q8IU54 200 aa10.1□□□□□ -0.79
SF3B3-210ENST00000567654 SMARCA4P51532 1647 aa10.09□□□□□ -0.79
SF3B3-210ENST00000567654 MS4A3Q96HJ5 214 aa10.08□□□□□ -0.8
SF3B3-210ENST00000567654 TRPC6Q9Y210 931 aa10.07□□□□□ -0.8
SF3B3-210ENST00000567654 BAZ1AQ9NRL2 1556 aaPredicted RBP10.06□□□□□ -0.8
SF3B3-210ENST00000567654 GALR2O43603 387 aaPredicted RBP10.05□□□□□ -0.8
SF3B3-210ENST00000567654 CHGAP10645 457 aaKnown RBP10.04□□□□□ -0.8
SF3B3-210ENST00000567654 ZNF467Q7Z7K2 595 aaPredicted RBP10.04□□□□□ -0.8
SF3B3-210ENST00000567654 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.03□□□□□ -0.8
SF3B3-210ENST00000567654 ZFP91Q96JP5 570 aaPredicted RBP10.03□□□□□ -0.8
SF3B3-210ENST00000567654 VGFO15240 615 aaPredicted RBP10.02□□□□□ -0.81
SF3B3-210ENST00000567654 STK25O00506 426 aa9.99□□□□□ -0.81
SF3B3-210ENST00000567654 GABBR2O75899 941 aa9.99□□□□□ -0.81
SF3B3-210ENST00000567654 PSEN1P49768 467 aa9.99□□□□□ -0.81
SF3B3-210ENST00000567654 SGIP1Q9BQI5 828 aa9.99□□□□□ -0.81
SF3B3-210ENST00000567654 PDAP1Q13442 181 aaKnown RBP9.98□□□□□ -0.81
SF3B3-210ENST00000567654 BCL11BQ9C0K0 894 aaPredicted RBP9.97□□□□□ -0.81
SF3B3-210ENST00000567654 STK24Q9Y6E0 443 aa9.97□□□□□ -0.81
SF3B3-210ENST00000567654 HS6ST3Q8IZP7 471 aa9.95□□□□□ -0.82
SF3B3-210ENST00000567654 PEG3Q9GZU2 1588 aa9.93□□□□□ -0.82
SF3B3-210ENST00000567654 TOP2AP11388 1531 aaKnown RBP9.93□□□□□ -0.82
SF3B3-210ENST00000567654 TMEM106CQ9BVX2 250 aa9.93□□□□□ -0.82
SF3B3-210ENST00000567654 TAOK2Q9UL54 1235 aa9.93□□□□□ -0.82
SF3B3-210ENST00000567654 BMP2KQ9NSY1 1161 aaPredicted RBP9.91□□□□□ -0.82
SF3B3-210ENST00000567654 EIF4G1Q04637 1599 aaKnown RBP9.9□□□□□ -0.82
SF3B3-210ENST00000567654 CABP2Q9NPB3 220 aa9.9□□□□□ -0.82
SF3B3-210ENST00000567654 TTLL13PA6NNM8 815 aa9.89□□□□□ -0.83
SF3B3-210ENST00000567654 NKX1-1Q15270 411 aaPredicted RBP9.89□□□□□ -0.83
SF3B3-210ENST00000567654 SMARCA2P51531 1590 aa9.88□□□□□ -0.83
SF3B3-210ENST00000567654 TIE1P35590 1138 aa9.87□□□□□ -0.83
SF3B3-210ENST00000567654 BBXQ8WY36 941 aaPredicted RBP9.87□□□□□ -0.83
SF3B3-210ENST00000567654 ATN1P54259 1190 aaPredicted RBP9.86□□□□□ -0.83
SF3B3-210ENST00000567654 EFCAB3Q8N7B9 438 aa9.86□□□□□ -0.83
SF3B3-210ENST00000567654 CLCN6P51797 869 aa9.85□□□□□ -0.83
SF3B3-210ENST00000567654 ATAD2BQ9ULI0 1458 aa9.85□□□□□ -0.83
SF3B3-210ENST00000567654 ATMINO43313 823 aaPredicted RBP9.84□□□□□ -0.83
SF3B3-210ENST00000567654 PAXIP1Q6ZW49 1069 aaPredicted RBP9.83□□□□□ -0.84
SF3B3-210ENST00000567654 CFAP44Q96MT7 982 aa9.83□□□□□ -0.84
SF3B3-210ENST00000567654 DCBLD2Q96PD2 775 aa9.83□□□□□ -0.84
SF3B3-210ENST00000567654 TRIM35Q9UPQ4 493 aa9.83□□□□□ -0.84
SF3B3-210ENST00000567654 POTEIP0CG38 1075 aa9.82□□□□□ -0.84
SF3B3-210ENST00000567654 PELP1Q8IZL8 1130 aaKnown RBP9.82□□□□□ -0.84
SF3B3-210ENST00000567654 CCDC88BA6NC98 1476 aa9.81□□□□□ -0.84
SF3B3-210ENST00000567654 GOLGA2Q08379 1002 aa9.81□□□□□ -0.84
SF3B3-210ENST00000567654 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.81□□□□□ -0.84
SF3B3-210ENST00000567654 ASTLQ6HA08 431 aaPredicted RBP9.8□□□□□ -0.84
SF3B3-210ENST00000567654 MFRPQ9BY79 579 aa9.79□□□□□ -0.84
SF3B3-210ENST00000567654 DNAJC5Q9H3Z4 198 aa9.79□□□□□ -0.84
SF3B3-210ENST00000567654 PHF8Q9UPP1 1060 aa9.78□□□□□ -0.84
SF3B3-210ENST00000567654 BAZ1BQ9UIG0 1483 aaKnown RBP9.78□□□□□ -0.84
SF3B3-210ENST00000567654 GTPBP6O43824 516 aaPredicted RBP9.77□□□□□ -0.85
SF3B3-210ENST00000567654 PLCB2Q00722 1185 aa9.77□□□□□ -0.85
SF3B3-210ENST00000567654 CC2D2AQ9P2K1 1620 aa9.77□□□□□ -0.85
SF3B3-210ENST00000567654 MKRN3Q13064 507 aaKnown RBP9.76□□□□□ -0.85
SF3B3-210ENST00000567654 HMGXB3Q12766 1538 aa9.76□□□□□ -0.85
SF3B3-210ENST00000567654 SPRYD3Q8NCJ5 442 aa9.75□□□□□ -0.85
SF3B3-210ENST00000567654 FBXO22Q8NEZ5 403 aa9.72□□□□□ -0.85
SF3B3-210ENST00000567654 MS4A4AQ96JQ5 239 aa9.72□□□□□ -0.85
SF3B3-210ENST00000567654 NCAPD3P42695 1498 aa9.72□□□□□ -0.85
SF3B3-210ENST00000567654 SOX12O15370 315 aa9.71□□□□□ -0.86
SF3B3-210ENST00000567654 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.71□□□□□ -0.863e-6■□□□□ 10.4
SF3B3-210ENST00000567654 PPP1R37O75864 691 aa9.7□□□□□ -0.86
SF3B3-210ENST00000567654 HAP1P54257 671 aaPredicted RBP9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 166.3 ms