RNA–Protein interactions for RNA: ENST00000563836.1

SMG1-209, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 5

Gene SMG1, Length 565 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-209ENST00000563836 EVX2Q03828 476 aa16.11■□□□□ 0.17
SMG1-209ENST00000563836 ZRANB1Q9UGI0 708 aa16.11■□□□□ 0.17
SMG1-209ENST00000563836 CIZ1Q9ULV3 898 aaPredicted RBP16.09■□□□□ 0.17
SMG1-209ENST00000563836 CCDC61Q9Y6R9 512 aa16.09■□□□□ 0.17
SMG1-209ENST00000563836 AMER1Q5JTC6 1135 aaPredicted RBP16.04■□□□□ 0.16
SMG1-209ENST00000563836 ZNF579Q8NAF0 562 aaKnown RBP16.04■□□□□ 0.16
SMG1-209ENST00000563836 PKD2Q13563 968 aa16.01■□□□□ 0.15
SMG1-209ENST00000563836 TRIM41Q8WV44 630 aa15.99■□□□□ 0.15
SMG1-209ENST00000563836 CHRM1P11229 460 aaPredicted RBP15.96■□□□□ 0.15
SMG1-209ENST00000563836 PHF12Q96QT6 1004 aa15.96■□□□□ 0.15
SMG1-209ENST00000563836 RTN4Q9NQC3 1192 aaKnown RBP15.96■□□□□ 0.15
SMG1-209ENST00000563836 PYGBP11216 843 aa15.94■□□□□ 0.14
SMG1-209ENST00000563836 KIF12Q96FN5 646 aa15.92■□□□□ 0.14
SMG1-209ENST00000563836 CLCN6P51797 869 aa15.9■□□□□ 0.14
SMG1-209ENST00000563836 ECM2O94769 699 aaPredicted RBP15.89■□□□□ 0.13
SMG1-209ENST00000563836 SP7Q8TDD2 431 aaPredicted RBP15.88■□□□□ 0.13
SMG1-209ENST00000563836 MAP3K13O43283 966 aa15.87■□□□□ 0.13
SMG1-209ENST00000563836 SGIP1Q9BQI5 828 aa15.86■□□□□ 0.13
SMG1-209ENST00000563836 PCDHB13Q9Y5F0 798 aa15.81■□□□□ 0.12
SMG1-209ENST00000563836 GABBR2O75899 941 aa15.8■□□□□ 0.12
SMG1-209ENST00000563836 MS4A3Q96HJ5 214 aa15.79■□□□□ 0.12
SMG1-209ENST00000563836 RNF25Q96BH1 459 aaPredicted RBP15.77■□□□□ 0.12
SMG1-209ENST00000563836 GALR2O43603 387 aaPredicted RBP15.76■□□□□ 0.11
SMG1-209ENST00000563836 ZNF467Q7Z7K2 595 aaPredicted RBP15.76■□□□□ 0.11
SMG1-209ENST00000563836 IFNL1Q8IU54 200 aa15.76■□□□□ 0.11
SMG1-209ENST00000563836 RGL2O15211 777 aa15.75■□□□□ 0.11
SMG1-209ENST00000563836 PCDHB8Q9UN66 801 aa15.72■□□□□ 0.11
SMG1-209ENST00000563836 RIOK3O14730 519 aaKnown RBP15.71■□□□□ 0.11
SMG1-209ENST00000563836 TRPC6Q9Y210 931 aa15.65■□□□□ 0.1
SMG1-209ENST00000563836 VGFO15240 615 aaPredicted RBP15.62■□□□□ 0.09
SMG1-209ENST00000563836 PDAP1Q13442 181 aaKnown RBP15.61■□□□□ 0.09
SMG1-209ENST00000563836 TAOK2Q9UL54 1235 aa15.61■□□□□ 0.09
SMG1-209ENST00000563836 TIE1P35590 1138 aa15.6■□□□□ 0.09
SMG1-209ENST00000563836 PSEN1P49768 467 aa15.58■□□□□ 0.08
SMG1-209ENST00000563836 BMP2KQ9NSY1 1161 aaPredicted RBP15.55■□□□□ 0.08
SMG1-209ENST00000563836 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.54■□□□□ 0.08
SMG1-209ENST00000563836 ZFP91Q96JP5 570 aaPredicted RBP15.54■□□□□ 0.08
SMG1-209ENST00000563836 DCBLD2Q96PD2 775 aa15.53■□□□□ 0.08
SMG1-209ENST00000563836 TTLL13PA6NNM8 815 aa15.52■□□□□ 0.08
SMG1-209ENST00000563836 ASTLQ6HA08 431 aaPredicted RBP15.52■□□□□ 0.08
SMG1-209ENST00000563836 TMEM106CQ9BVX2 250 aa15.52■□□□□ 0.08
SMG1-209ENST00000563836 ATMINO43313 823 aaPredicted RBP15.5■□□□□ 0.07
SMG1-209ENST00000563836 POTEIP0CG38 1075 aa15.49■□□□□ 0.07
SMG1-209ENST00000563836 DCAF8L2P0C7V8 631 aa15.48■□□□□ 0.07
SMG1-209ENST00000563836 ATN1P54259 1190 aaPredicted RBP15.46■□□□□ 0.07
SMG1-209ENST00000563836 STK25O00506 426 aa15.45■□□□□ 0.06
SMG1-209ENST00000563836 HS6ST3Q8IZP7 471 aa15.44■□□□□ 0.06
SMG1-209ENST00000563836 BCL11BQ9C0K0 894 aaPredicted RBP15.44■□□□□ 0.06
SMG1-209ENST00000563836 CHGAP10645 457 aaKnown RBP15.42■□□□□ 0.06
SMG1-209ENST00000563836 TRIM35Q9UPQ4 493 aa15.41■□□□□ 0.06
SMG1-209ENST00000563836 STK24Q9Y6E0 443 aa15.4■□□□□ 0.06
SMG1-209ENST00000563836 PELP1Q8IZL8 1130 aaKnown RBP15.39■□□□□ 0.05
SMG1-209ENST00000563836 ZCCHC6Q5VYS8 1495 aaKnown RBP15.39■□□□□ 0.05
SMG1-209ENST00000563836 CABP2Q9NPB3 220 aa15.38■□□□□ 0.05
SMG1-209ENST00000563836 DNAJC5Q9H3Z4 198 aa15.34■□□□□ 0.05
SMG1-209ENST00000563836 ABCC9O60706 1549 aa15.33■□□□□ 0.05
SMG1-209ENST00000563836 GOLGA2Q08379 1002 aa15.33■□□□□ 0.04
SMG1-209ENST00000563836 IER5LQ5T953 404 aa15.3■□□□□ 0.04
SMG1-209ENST00000563836 EFCAB3Q8N7B9 438 aa15.3■□□□□ 0.04
SMG1-209ENST00000563836 SLC39A7Q92504 469 aa15.3■□□□□ 0.04
SMG1-209ENST00000563836 MKRN3Q13064 507 aaKnown RBP15.29■□□□□ 0.04
SMG1-209ENST00000563836 C7P10643 843 aa15.26■□□□□ 0.03
SMG1-209ENST00000563836 SOX12O15370 315 aa15.24■□□□□ 0.03
SMG1-209ENST00000563836 DCAF1Q9Y4B6 1507 aa15.23■□□□□ 0.03
SMG1-209ENST00000563836 METRNQ9UJH8 293 aa15.23■□□□□ 0.03
SMG1-209ENST00000563836 IRX5P78411 483 aaPredicted RBP15.22■□□□□ 0.03
SMG1-209ENST00000563836 NKX1-1Q15270 411 aaPredicted RBP15.22■□□□□ 0.03
SMG1-209ENST00000563836 ILDR1Q86SU0 546 aaPredicted RBP15.22■□□□□ 0.03
SMG1-209ENST00000563836 BBXQ8WY36 941 aaPredicted RBP15.22■□□□□ 0.03
SMG1-209ENST00000563836 MFRPQ9BY79 579 aa15.18■□□□□ 0.02
SMG1-209ENST00000563836 POTEFA5A3E0 1075 aa15.17■□□□□ 0.02
SMG1-209ENST00000563836 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.17■□□□□ 0.02
SMG1-209ENST00000563836 PHF8Q9UPP1 1060 aa15.17■□□□□ 0.02
SMG1-209ENST00000563836 OCEL1Q9H607 264 aa15.16■□□□□ 0.02
SMG1-209ENST00000563836 FBXO22Q8NEZ5 403 aa15.15■□□□□ 0.02
SMG1-209ENST00000563836 COLQQ9Y215 455 aaPredicted RBP15.15■□□□□ 0.02
SMG1-209ENST00000563836 SEC24BO95487 1268 aa15.14■□□□□ 0.01
SMG1-209ENST00000563836 NLRP6P59044 892 aa15.14■□□□□ 0.01
SMG1-209ENST00000563836 PLCG2P16885 1265 aa15.13■□□□□ 0.01
SMG1-209ENST00000563836 PDCD7Q8N8D1 485 aaKnown RBP15.13■□□□□ 0.01
SMG1-209ENST00000563836 MS4A4AQ96JQ5 239 aa15.11■□□□□ 0.01
SMG1-209ENST00000563836 MYO15BQ96JP2 1530 aa15.11■□□□□ 0.01
SMG1-209ENST00000563836 NACADO15069 1562 aa15.11■□□□□ 0.01
SMG1-209ENST00000563836 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.09■□□□□ 0.01
SMG1-209ENST00000563836 RYDENQ9NUL5 291 aaKnown RBP15.08■□□□□ 0
SMG1-209ENST00000563836 GTPBP6O43824 516 aaPredicted RBP15.07■□□□□ 0
SMG1-209ENST00000563836 RB1CC1Q8TDY2 1594 aa15.03■□□□□ -0
SMG1-209ENST00000563836 DPY19L2Q6NUT2 758 aa15.03■□□□□ -0
SMG1-209ENST00000563836 POTEB2H3BUK9 544 aa15□□□□□ -0.01
SMG1-209ENST00000563836 SPRYD3Q8NCJ5 442 aa15□□□□□ -0.01
SMG1-209ENST00000563836 PAXIP1Q6ZW49 1069 aaPredicted RBP14.97□□□□□ -0.01
SMG1-209ENST00000563836 PPP1R37O75864 691 aa14.96□□□□□ -0.01
SMG1-209ENST00000563836 L3MBTL3Q96JM7 780 aaPredicted RBP14.96□□□□□ -0.01
SMG1-209ENST00000563836 POTEJP0CG39 1038 aa14.93□□□□□ -0.02
SMG1-209ENST00000563836 CFAP44Q96MT7 982 aa14.93□□□□□ -0.02
SMG1-209ENST00000563836 BOLA1Q9Y3E2 137 aa14.93□□□□□ -0.02
SMG1-209ENST00000563836 TMEM121BQ9BXQ6 578 aaPredicted RBP14.91□□□□□ -0.02
SMG1-209ENST00000563836 PLCB2Q00722 1185 aa14.9□□□□□ -0.02
SMG1-209ENST00000563836 LHX8Q68G74 356 aa14.9□□□□□ -0.02
SMG1-209ENST00000563836 SHROOM4Q9ULL8 1493 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms