RNA–Protein interactions for RNA: ENST00000560131.1

TPM1-222, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 537 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-222ENST00000560131 MAMSTRQ6ZN01 415 aa10.6□□□□□ -0.71
TPM1-222ENST00000560131 METRNQ9UJH8 293 aa10.58□□□□□ -0.72
TPM1-222ENST00000560131 C7P10643 843 aa10.57□□□□□ -0.72
TPM1-222ENST00000560131 SLC39A7Q92504 469 aa10.56□□□□□ -0.72
TPM1-222ENST00000560131 FAM163AQ96GL9 167 aaPredicted RBP10.56□□□□□ -0.72
TPM1-222ENST00000560131 POTEJP0CG39 1038 aa10.55□□□□□ -0.72
TPM1-222ENST00000560131 ASTLQ6HA08 431 aaPredicted RBP10.54□□□□□ -0.72
TPM1-222ENST00000560131 LCE2DQ5TA82 110 aaPredicted RBP10.53□□□□□ -0.72
TPM1-222ENST00000560131 NPM1P06748 294 aaKnown RBP eCLIP10.51□□□□□ -0.73
TPM1-222ENST00000560131 ATMINO43313 823 aaPredicted RBP10.5□□□□□ -0.73
TPM1-222ENST00000560131 SCUBE2Q9NQ36 999 aa10.49□□□□□ -0.73
TPM1-222ENST00000560131 MS4A3Q96HJ5 214 aa10.46□□□□□ -0.73
TPM1-222ENST00000560131 MNX1P50219 401 aaPredicted RBP10.39□□□□□ -0.75
TPM1-222ENST00000560131 CDAN1Q8IWY9 1227 aa10.36□□□□□ -0.75
TPM1-222ENST00000560131 ATN1P54259 1190 aaPredicted RBP10.35□□□□□ -0.75
TPM1-222ENST00000560131 POTEFA5A3E0 1075 aa10.3□□□□□ -0.76
TPM1-222ENST00000560131 FBXO3Q9UK99 471 aa10.29□□□□□ -0.76
TPM1-222ENST00000560131 SPDYE4A6NLX3 237 aa10.27□□□□□ -0.77
TPM1-222ENST00000560131 TSPYL2Q9H2G4 693 aaPredicted RBP10.27□□□□□ -0.77
TPM1-222ENST00000560131 BMP2KQ9NSY1 1161 aaPredicted RBP10.24□□□□□ -0.77
TPM1-222ENST00000560131 KIF12Q96FN5 646 aa10.23□□□□□ -0.77
TPM1-222ENST00000560131 CCDC61Q9Y6R9 512 aa10.23□□□□□ -0.77
TPM1-222ENST00000560131 SEC24BO95487 1268 aa10.21□□□□□ -0.77
TPM1-222ENST00000560131 TIE1P35590 1138 aa10.19□□□□□ -0.78
TPM1-222ENST00000560131 COLQQ9Y215 455 aaPredicted RBP10.18□□□□□ -0.78
TPM1-222ENST00000560131 TRPC6Q9Y210 931 aa10.17□□□□□ -0.78
TPM1-222ENST00000560131 ST18O60284 1047 aa10.16□□□□□ -0.78
TPM1-222ENST00000560131 MMRN1Q13201 1228 aa10.16□□□□□ -0.78
TPM1-222ENST00000560131 PLCB2Q00722 1185 aa10.15□□□□□ -0.78
TPM1-222ENST00000560131 PROM2Q8N271 834 aa10.13□□□□□ -0.79
TPM1-222ENST00000560131 MAP3K13O43283 966 aa10.12□□□□□ -0.79
TPM1-222ENST00000560131 SPNS2Q8IVW8 549 aa10.12□□□□□ -0.79
TPM1-222ENST00000560131 SLAIN1Q8ND83 568 aa10.12□□□□□ -0.79
TPM1-222ENST00000560131 TTLL13PA6NNM8 815 aa10.1□□□□□ -0.79
TPM1-222ENST00000560131 VASPP50552 380 aaPredicted RBP10.1□□□□□ -0.79
TPM1-222ENST00000560131 IER5LQ5T953 404 aa10.1□□□□□ -0.79
TPM1-222ENST00000560131 TRIM35Q9UPQ4 493 aa10.04□□□□□ -0.8
TPM1-222ENST00000560131 IFNLR1Q8IU57 520 aaPredicted RBP10.02□□□□□ -0.81
TPM1-222ENST00000560131 TMEM121BQ9BXQ6 578 aaPredicted RBP10.02□□□□□ -0.81
TPM1-222ENST00000560131 HAP1P54257 671 aaPredicted RBP10□□□□□ -0.81
TPM1-222ENST00000560131 SGIP1Q9BQI5 828 aa9.99□□□□□ -0.81
TPM1-222ENST00000560131 DCAF8L2P0C7V8 631 aa9.98□□□□□ -0.81
TPM1-222ENST00000560131 SNPHO15079 494 aa9.97□□□□□ -0.81
TPM1-222ENST00000560131 PLEKHG5O94827 1062 aa9.97□□□□□ -0.81
TPM1-222ENST00000560131 RASEFQ8IZ41 740 aa9.97□□□□□ -0.81
TPM1-222ENST00000560131 PLCG2P16885 1265 aa9.96□□□□□ -0.82
TPM1-222ENST00000560131 PKD2Q13563 968 aa9.94□□□□□ -0.82
TPM1-222ENST00000560131 PCDHB13Q9Y5F0 798 aa9.94□□□□□ -0.82
TPM1-222ENST00000560131 VSIG10Q8N0Z9 540 aa9.91□□□□□ -0.82
TPM1-222ENST00000560131 MARVELD3Q96A59 401 aa9.91□□□□□ -0.82
TPM1-222ENST00000560131 MIER1Q8N108 512 aa9.9□□□□□ -0.82
TPM1-222ENST00000560131 BCANQ96GW7 911 aa9.9□□□□□ -0.82
TPM1-222ENST00000560131 TMEM106CQ9BVX2 250 aa9.88□□□□□ -0.83
TPM1-222ENST00000560131 IRX5P78411 483 aaPredicted RBP9.87□□□□□ -0.83
TPM1-222ENST00000560131 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.87□□□□□ -0.83
TPM1-222ENST00000560131 IFNL1Q8IU54 200 aa9.85□□□□□ -0.83
TPM1-222ENST00000560131 OCEL1Q9H607 264 aa9.84□□□□□ -0.83
TPM1-222ENST00000560131 EMP3P54852 163 aa9.81□□□□□ -0.84
TPM1-222ENST00000560131 BBXQ8WY36 941 aaPredicted RBP9.81□□□□□ -0.84
TPM1-222ENST00000560131 SPOCK2Q92563 424 aa9.81□□□□□ -0.84
TPM1-222ENST00000560131 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.81□□□□□ -0.84
TPM1-222ENST00000560131 KLHL34Q8N239 644 aa9.8□□□□□ -0.84
TPM1-222ENST00000560131 KRTAP3-3Q9BYR6 98 aa9.78□□□□□ -0.84
TPM1-222ENST00000560131 KRTAP3-2Q9BYR7 98 aa9.78□□□□□ -0.84
TPM1-222ENST00000560131 ECM2O94769 699 aaPredicted RBP9.76□□□□□ -0.85
TPM1-222ENST00000560131 TAOK2Q9UL54 1235 aa9.76□□□□□ -0.85
TPM1-222ENST00000560131 PRKCSHP14314 528 aaPredicted RBP9.75□□□□□ -0.85
TPM1-222ENST00000560131 HS3ST6Q96QI5 342 aa9.75□□□□□ -0.85
TPM1-222ENST00000560131 NUBP1P53384 320 aa9.74□□□□□ -0.85
TPM1-222ENST00000560131 PLCD3Q8N3E9 789 aa9.74□□□□□ -0.85
TPM1-222ENST00000560131 POTEB3A0JP26 581 aa9.73□□□□□ -0.85
TPM1-222ENST00000560131 FAM205CA6NFA0 338 aa9.73□□□□□ -0.85
TPM1-222ENST00000560131 POTEBQ6S5H4 581 aa9.73□□□□□ -0.85
TPM1-222ENST00000560131 PAXIP1Q6ZW49 1069 aaPredicted RBP9.72□□□□□ -0.85
TPM1-222ENST00000560131 ZBTB47Q9UFB7 747 aaPredicted RBP9.72□□□□□ -0.85
TPM1-222ENST00000560131 KDM2AQ9Y2K7 1162 aa9.71□□□□□ -0.86
TPM1-222ENST00000560131 FAM212AQ96EL1 285 aa9.7□□□□□ -0.86
TPM1-222ENST00000560131 C3orf67Q6ZVT6 689 aa9.69□□□□□ -0.86
TPM1-222ENST00000560131 CFAP44Q96MT7 982 aa9.68□□□□□ -0.86
TPM1-222ENST00000560131 L3MBTL3Q96JM7 780 aaPredicted RBP9.66□□□□□ -0.86
TPM1-222ENST00000560131 RGL2O15211 777 aa9.64□□□□□ -0.87
TPM1-222ENST00000560131 SPRYD3Q8NCJ5 442 aa9.64□□□□□ -0.87
TPM1-222ENST00000560131 PDCD7Q8N8D1 485 aaKnown RBP9.61□□□□□ -0.87
TPM1-222ENST00000560131 NISCHQ9Y2I1 1504 aa9.61□□□□□ -0.87
TPM1-222ENST00000560131 TPRNQ4KMQ1 711 aa9.6□□□□□ -0.87
TPM1-222ENST00000560131 RNF166Q96A37 237 aaPredicted RBP9.59□□□□□ -0.87
TPM1-222ENST00000560131 PCDHB8Q9UN66 801 aa9.58□□□□□ -0.88
TPM1-222ENST00000560131 PYGBP11216 843 aa9.57□□□□□ -0.88
TPM1-222ENST00000560131 TSHZ2Q9NRE2 1034 aa9.57□□□□□ -0.88
TPM1-222ENST00000560131 MKRN3Q13064 507 aaKnown RBP9.56□□□□□ -0.88
TPM1-222ENST00000560131 DCAF8Q5TAQ9 597 aa9.56□□□□□ -0.88
TPM1-222ENST00000560131 GOLGA2Q08379 1002 aa9.55□□□□□ -0.88
TPM1-222ENST00000560131 CHGAP10645 457 aaKnown RBP9.53□□□□□ -0.88
TPM1-222ENST00000560131 CIZ1Q9ULV3 898 aaPredicted RBP9.53□□□□□ -0.88
TPM1-222ENST00000560131 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.51□□□□□ -0.89
TPM1-222ENST00000560131 HOXB1P14653 301 aaPredicted RBP9.5□□□□□ -0.89
TPM1-222ENST00000560131 TRIM41Q8WV44 630 aa9.5□□□□□ -0.89
TPM1-222ENST00000560131 MYT1LQ9UL68 1186 aa9.5□□□□□ -0.89
TPM1-222ENST00000560131 ERBB3P21860 1342 aa9.5□□□□□ -0.89
TPM1-222ENST00000560131 HOXB3P14651 431 aaPredicted RBP9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms