RNA–Protein interactions for RNA: ENST00000558988.5

SPG11-213, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 3

Gene SPG11, Length 620 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-213ENST00000558988 NPM1P06748 294 aaKnown RBP eCLIP18.61■□□□□ 0.57
SPG11-213ENST00000558988 C7P10643 843 aa18.61■□□□□ 0.57
SPG11-213ENST00000558988 MS4A3Q96HJ5 214 aa18.61■□□□□ 0.57
SPG11-213ENST00000558988 MNX1P50219 401 aaPredicted RBP18.58■□□□□ 0.56
SPG11-213ENST00000558988 MAMSTRQ6ZN01 415 aa18.57■□□□□ 0.56
SPG11-213ENST00000558988 FAM163AQ96GL9 167 aaPredicted RBP18.57■□□□□ 0.56
SPG11-213ENST00000558988 SCUBE2Q9NQ36 999 aa18.44■□□□□ 0.54
SPG11-213ENST00000558988 SPDYE4A6NLX3 237 aa18.43■□□□□ 0.54
SPG11-213ENST00000558988 ATN1P54259 1190 aaPredicted RBP18.4■□□□□ 0.54
SPG11-213ENST00000558988 POTEFA5A3E0 1075 aa18.31■□□□□ 0.52
SPG11-213ENST00000558988 TSPYL2Q9H2G4 693 aaPredicted RBP18.31■□□□□ 0.52
SPG11-213ENST00000558988 CCDC61Q9Y6R9 512 aa18.24■□□□□ 0.51
SPG11-213ENST00000558988 BMP2KQ9NSY1 1161 aaPredicted RBP18.23■□□□□ 0.51
SPG11-213ENST00000558988 CDAN1Q8IWY9 1227 aa18.21■□□□□ 0.51
SPG11-213ENST00000558988 KIF12Q96FN5 646 aa18.2■□□□□ 0.5
SPG11-213ENST00000558988 TRPC6Q9Y210 931 aa18.2■□□□□ 0.5
SPG11-213ENST00000558988 CSRNP3Q8WYN3 585 aa18.18■□□□□ 0.5
SPG11-213ENST00000558988 COLQQ9Y215 455 aaPredicted RBP18.1■□□□□ 0.49
SPG11-213ENST00000558988 TIE1P35590 1138 aa18.06■□□□□ 0.48
SPG11-213ENST00000558988 MAP3K13O43283 966 aa18.05■□□□□ 0.48
SPG11-213ENST00000558988 SEC24BO95487 1268 aa18.04■□□□□ 0.48
SPG11-213ENST00000558988 NISCHQ9Y2I1 1504 aa18.01■□□□□ 0.47
SPG11-213ENST00000558988 TTLL13PA6NNM8 815 aa17.98■□□□□ 0.47
SPG11-213ENST00000558988 ST18O60284 1047 aa17.94■□□□□ 0.46
SPG11-213ENST00000558988 SLAIN1Q8ND83 568 aa17.89■□□□□ 0.45
SPG11-213ENST00000558988 RASEFQ8IZ41 740 aa17.88■□□□□ 0.45
SPG11-213ENST00000558988 TRIM35Q9UPQ4 493 aa17.87■□□□□ 0.45
SPG11-213ENST00000558988 IER5LQ5T953 404 aa17.85■□□□□ 0.45
SPG11-213ENST00000558988 MMRN1Q13201 1228 aa17.84■□□□□ 0.45
SPG11-213ENST00000558988 PROM2Q8N271 834 aa17.81■□□□□ 0.44
SPG11-213ENST00000558988 SPNS2Q8IVW8 549 aa17.78■□□□□ 0.44
SPG11-213ENST00000558988 MIER1Q8N108 512 aa17.72■□□□□ 0.43
SPG11-213ENST00000558988 PCDHB13Q9Y5F0 798 aa17.72■□□□□ 0.43
SPG11-213ENST00000558988 PLEKHG5O94827 1062 aa17.7■□□□□ 0.42
SPG11-213ENST00000558988 SGIP1Q9BQI5 828 aa17.69■□□□□ 0.42
SPG11-213ENST00000558988 PLCG2P16885 1265 aa17.64■□□□□ 0.41
SPG11-213ENST00000558988 TMEM121BQ9BXQ6 578 aaPredicted RBP17.62■□□□□ 0.41
SPG11-213ENST00000558988 IFNL1Q8IU54 200 aa17.61■□□□□ 0.41
SPG11-213ENST00000558988 TMEM106CQ9BVX2 250 aa17.61■□□□□ 0.41
SPG11-213ENST00000558988 IRX5P78411 483 aaPredicted RBP17.57■□□□□ 0.4
SPG11-213ENST00000558988 MARVELD3Q96A59 401 aa17.57■□□□□ 0.4
SPG11-213ENST00000558988 SNPHO15079 494 aa17.5■□□□□ 0.39
SPG11-213ENST00000558988 NUBP1P53384 320 aa17.47■□□□□ 0.39
SPG11-213ENST00000558988 EHMT2Q96KQ7 1210 aa17.46■□□□□ 0.39
SPG11-213ENST00000558988 PLCD3Q8N3E9 789 aa17.45■□□□□ 0.38
SPG11-213ENST00000558988 OCEL1Q9H607 264 aa17.45■□□□□ 0.38
SPG11-213ENST00000558988 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.44■□□□□ 0.38
SPG11-213ENST00000558988 FAM212AQ96EL1 285 aa17.33■□□□□ 0.36
SPG11-213ENST00000558988 EMP3P54852 163 aa17.32■□□□□ 0.36
SPG11-213ENST00000558988 KRTAP3-3Q9BYR6 98 aa17.31■□□□□ 0.36
SPG11-213ENST00000558988 KRTAP3-2Q9BYR7 98 aa17.31■□□□□ 0.36
SPG11-213ENST00000558988 ZBTB47Q9UFB7 747 aaPredicted RBP17.31■□□□□ 0.36
SPG11-213ENST00000558988 POTEB3A0JP26 581 aa17.29■□□□□ 0.36
SPG11-213ENST00000558988 POTEBQ6S5H4 581 aa17.29■□□□□ 0.36
SPG11-213ENST00000558988 HS3ST6Q96QI5 342 aa17.24■□□□□ 0.35
SPG11-213ENST00000558988 FAM205CA6NFA0 338 aa17.21■□□□□ 0.35
SPG11-213ENST00000558988 PCDHB8Q9UN66 801 aa17.18■□□□□ 0.34
SPG11-213ENST00000558988 PYGBP11216 843 aa17.17■□□□□ 0.34
SPG11-213ENST00000558988 C3orf67Q6ZVT6 689 aa17.17■□□□□ 0.34
SPG11-213ENST00000558988 PDCD7Q8N8D1 485 aaKnown RBP17.16■□□□□ 0.34
SPG11-213ENST00000558988 DCAF8Q5TAQ9 597 aa17.1■□□□□ 0.33
SPG11-213ENST00000558988 L3MBTL3Q96JM7 780 aaPredicted RBP17.07■□□□□ 0.32
SPG11-213ENST00000558988 MKRN3Q13064 507 aaKnown RBP16.99■□□□□ 0.31
SPG11-213ENST00000558988 GOLGA2Q08379 1002 aa16.96■□□□□ 0.31
SPG11-213ENST00000558988 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.95■□□□□ 0.31e-6■■■■□ 19.6
SPG11-213ENST00000558988 RNF166Q96A37 237 aaPredicted RBP16.89■□□□□ 0.29
SPG11-213ENST00000558988 HOXB3P14651 431 aaPredicted RBP16.88■□□□□ 0.29
SPG11-213ENST00000558988 ZNF467Q7Z7K2 595 aaPredicted RBP16.84■□□□□ 0.29
SPG11-213ENST00000558988 DPY19L2Q6NUT2 758 aa16.83■□□□□ 0.28
SPG11-213ENST00000558988 HOXB1P14653 301 aaPredicted RBP16.81■□□□□ 0.28
SPG11-213ENST00000558988 ERBB3P21860 1342 aa16.8■□□□□ 0.28
SPG11-213ENST00000558988 ILDR1Q86SU0 546 aaPredicted RBP16.79■□□□□ 0.28
SPG11-213ENST00000558988 PSEN1P49768 467 aa16.77■□□□□ 0.28
SPG11-213ENST00000558988 ZNF710Q8N1W2 664 aa16.77■□□□□ 0.28
SPG11-213ENST00000558988 MYT1LQ9UL68 1186 aa16.74■□□□□ 0.27
SPG11-213ENST00000558988 BOLA1Q9Y3E2 137 aa16.71■□□□□ 0.27
SPG11-213ENST00000558988 G3V3G9 751 aa16.68■□□□□ 0.26
SPG11-213ENST00000558988 GSE1Q14687 1217 aa16.68■□□□□ 0.26
SPG11-213ENST00000558988 VARS2Q5ST30 1063 aaKnown RBP16.68■□□□□ 0.26
SPG11-213ENST00000558988 DOK7Q18PE1 504 aa16.67■□□□□ 0.26
SPG11-213ENST00000558988 CHRM1P11229 460 aaPredicted RBP16.65■□□□□ 0.26
SPG11-213ENST00000558988 CABP2Q9NPB3 220 aa16.58■□□□□ 0.24
SPG11-213ENST00000558988 PDAP1Q13442 181 aaKnown RBP16.57■□□□□ 0.24
SPG11-213ENST00000558988 FKBP8Q14318 412 aa16.56■□□□□ 0.24
SPG11-213ENST00000558988 ZNF687Q8N1G0 1237 aa16.55■□□□□ 0.24
SPG11-213ENST00000558988 RIMBP2O15034 1052 aa16.54■□□□□ 0.24
SPG11-213ENST00000558988 KLHL34Q8N239 644 aa16.53■□□□□ 0.24
SPG11-213ENST00000558988 PTGER2P43116 358 aa16.47■□□□□ 0.23
SPG11-213ENST00000558988 FBXO3Q9UK99 471 aa16.44■□□□□ 0.22
SPG11-213ENST00000558988 ANKRD13DQ6ZTN6 518 aa16.42■□□□□ 0.22
SPG11-213ENST00000558988 ZSWIM6Q9HCJ5 1215 aa16.42■□□□□ 0.22
SPG11-213ENST00000558988 GPR153Q6NV75 609 aa16.41■□□□□ 0.22
SPG11-213ENST00000558988 TMEM92Q6UXU6 159 aa16.39■□□□□ 0.21
SPG11-213ENST00000558988 VASPP50552 380 aaPredicted RBP16.33■□□□□ 0.2
SPG11-213ENST00000558988 MICALL2Q8IY33 904 aa16.29■□□□□ 0.2
SPG11-213ENST00000558988 ARSIQ5FYB1 569 aa16.28■□□□□ 0.2
SPG11-213ENST00000558988 EFCAB3Q8N7B9 438 aa16.28■□□□□ 0.2
SPG11-213ENST00000558988 LSM11P83369 360 aaKnown RBP eCLIP16.25■□□□□ 0.19
SPG11-213ENST00000558988 PLA2G2EQ9NZK7 142 aa16.25■□□□□ 0.19
SPG11-213ENST00000558988 CIZ1Q9ULV3 898 aaPredicted RBP16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms