RNA–Protein interactions for RNA: ENST00000558768.5

TRPM1-208, Transcript of transient receptor potential cation channel subfamily M member 1, human

APPRIS ALT2 TSL 1 (best)

Gene TRPM1, Length 4,581 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRPM1-208	ENST00000558768	PKNOX2	Q96KN3	472 aa		12.84	□□□□□ -0.35
TRPM1-208	ENST00000558768	SLC4A1AP	Q9BWU0	796 aa	Known RBP	12.84	□□□□□ -0.35
TRPM1-208	ENST00000558768	NOP58	Q9Y2X3	529 aa	Known RBP	12.83	□□□□□ -0.35
TRPM1-208	ENST00000558768	CLIP1	P30622	1438 aa		12.83	□□□□□ -0.36
TRPM1-208	ENST00000558768	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	12.82	□□□□□ -0.36
TRPM1-208	ENST00000558768	SCRIB	Q14160	1630 aa		12.82	□□□□□ -0.36
TRPM1-208	ENST00000558768	PTMA	P06454	111 aa	Known RBP	12.82	□□□□□ -0.36
TRPM1-208	ENST00000558768	FANCI	Q9NVI1	1328 aa		12.82	□□□□□ -0.36
TRPM1-208	ENST00000558768	TNNT3	P45378	269 aa	Predicted RBP	12.8	□□□□□ -0.36
TRPM1-208	ENST00000558768	VSIG10	Q8N0Z9	540 aa		12.8	□□□□□ -0.36
TRPM1-208	ENST00000558768	CCER2	I3L3R5	266 aa		12.79	□□□□□ -0.36
TRPM1-208	ENST00000558768	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	12.79	□□□□□ -0.36
TRPM1-208	ENST00000558768	PNN	Q9H307	717 aa	Known RBP	12.78	□□□□□ -0.36
TRPM1-208	ENST00000558768	PPP4R2	Q9NY27	417 aa		12.78	□□□□□ -0.36
TRPM1-208	ENST00000558768	IRX6	P78412	446 aa	Predicted RBP	12.77	□□□□□ -0.37
TRPM1-208	ENST00000558768	L1TD1	Q5T7N2	865 aa	Known RBP	12.77	□□□□□ -0.37
TRPM1-208	ENST00000558768	PTMS	P20962	102 aa		12.76	□□□□□ -0.37
TRPM1-208	ENST00000558768	UBE2Q2	Q8WVN8	375 aa		12.76	□□□□□ -0.37
TRPM1-208	ENST00000558768	FAM50A	Q14320	339 aa	Known RBP	12.75	□□□□□ -0.37
TRPM1-208	ENST00000558768	HSP90AA2P	Q14568	343 aa	Predicted RBP	12.74	□□□□□ -0.37
TRPM1-208	ENST00000558768	RSPH6A	Q9H0K4	717 aa		12.73	□□□□□ -0.37
TRPM1-208	ENST00000558768	CHAF1A	Q13111	956 aa	Predicted RBP	12.7	□□□□□ -0.38
TRPM1-208	ENST00000558768	CEP164	Q9UPV0	1460 aa		12.69	□□□□□ -0.38
TRPM1-208	ENST00000558768	MSN	P26038	577 aa	Known RBP	12.69	□□□□□ -0.38
TRPM1-208	ENST00000558768	LAS1L	Q9Y4W2	734 aa	Known RBP	12.69	□□□□□ -0.38
TRPM1-208	ENST00000558768	TONSL	Q96HA7	1378 aa		12.68	□□□□□ -0.38
TRPM1-208	ENST00000558768	VPS8	Q8N3P4	1428 aa		12.68	□□□□□ -0.38
TRPM1-208	ENST00000558768	DHX57	Q6P158	1386 aa	Known RBP	12.67	□□□□□ -0.38
TRPM1-208	ENST00000558768	KCNH8	Q96L42	1107 aa		12.66	□□□□□ -0.38
TRPM1-208	ENST00000558768	SOGA1	O94964	1423 aa		12.66	□□□□□ -0.38
TRPM1-208	ENST00000558768	TIMELESS	Q9UNS1	1208 aa		12.66	□□□□□ -0.38
TRPM1-208	ENST00000558768	FAM9B	Q8IZU0	186 aa		12.64	□□□□□ -0.39
TRPM1-208	ENST00000558768	ARID4B	Q4LE39	1312 aa	Predicted RBP	12.63	□□□□□ -0.39
TRPM1-208	ENST00000558768	HIRIP3	Q9BW71	556 aa	Predicted RBP	12.62	□□□□□ -0.39
TRPM1-208	ENST00000558768	CCDC88B	A6NC98	1476 aa		12.61	□□□□□ -0.39
TRPM1-208	ENST00000558768	CALR	P27797	417 aa	Known RBP	12.6	□□□□□ -0.39
TRPM1-208	ENST00000558768	B4GALNT3	Q6L9W6	998 aa		12.6	□□□□□ -0.39
TRPM1-208	ENST00000558768	NRDC	O43847	1150 aa		12.59	□□□□□ -0.39
TRPM1-208	ENST00000558768	SALL2	Q9Y467	1007 aa	Predicted RBP	12.59	□□□□□ -0.39
TRPM1-208	ENST00000558768		A0A0U1RQG5	324 aa	Predicted RBP	12.58	□□□□□ -0.4
TRPM1-208	ENST00000558768	MRS2	Q9HD23	443 aa		12.58	□□□□□ -0.4
TRPM1-208	ENST00000558768	CECR2	Q9BXF3	1484 aa		12.57	□□□□□ -0.4
TRPM1-208	ENST00000558768	MSH5	O43196	834 aa		12.57	□□□□□ -0.4
TRPM1-208	ENST00000558768	CCNB3	Q8WWL7	1395 aa		12.56	□□□□□ -0.4
TRPM1-208	ENST00000558768	IPO9	Q96P70	1041 aa	Known RBP	12.55	□□□□□ -0.4
TRPM1-208	ENST00000558768	ZRSR1	Q15695	479 aa	Known RBP	12.54	□□□□□ -0.4
TRPM1-208	ENST00000558768	SIN3A	Q96ST3	1273 aa		12.54	□□□□□ -0.4
TRPM1-208	ENST00000558768	TMC1	Q8TDI8	760 aa		12.53	□□□□□ -0.4
TRPM1-208	ENST00000558768	MROH2B	Q7Z745	1585 aa		12.53	□□□□□ -0.4
TRPM1-208	ENST00000558768	GOLGA6L6	A8MZA4	724 aa		12.52	□□□□□ -0.41
TRPM1-208	ENST00000558768	ABCC8	Q09428	1581 aa		12.52	□□□□□ -0.41
TRPM1-208	ENST00000558768	APP	P05067	770 aa		12.51	□□□□□ -0.41
TRPM1-208	ENST00000558768	USP35	Q9P2H5	1018 aa		12.5	□□□□□ -0.41
TRPM1-208	ENST00000558768	PDE4C	Q08493	712 aa		12.5	□□□□□ -0.41
TRPM1-208	ENST00000558768	PLCB2	Q00722	1185 aa		12.49	□□□□□ -0.41
TRPM1-208	ENST00000558768	EIF4G2	P78344	907 aa	Known RBP eCLIP	12.48	□□□□□ -0.41
TRPM1-208	ENST00000558768	KIAA2012	Q0VF49	1180 aa		12.48	□□□□□ -0.41
TRPM1-208	ENST00000558768	ARID3A	Q99856	593 aa		12.47	□□□□□ -0.41
TRPM1-208	ENST00000558768	PPP1R15A	O75807	674 aa	Predicted RBP	12.47	□□□□□ -0.41
TRPM1-208	ENST00000558768	SETD5	Q9C0A6	1442 aa		12.47	□□□□□ -0.41
TRPM1-208	ENST00000558768	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	12.46	□□□□□ -0.41
TRPM1-208	ENST00000558768	RAB3GAP2	Q9H2M9	1393 aa		12.46	□□□□□ -0.41
TRPM1-208	ENST00000558768	KANK4	Q5T7N3	995 aa	Predicted RBP	12.44	□□□□□ -0.42
TRPM1-208	ENST00000558768	MYH16	Q9H6N6	1097 aa		12.42	□□□□□ -0.42
TRPM1-208	ENST00000558768	BAZ1B	Q9UIG0	1483 aa	Known RBP	12.42	□□□□□ -0.42
TRPM1-208	ENST00000558768	GOLGA6L3	A6NEY3	463 aa		12.42	□□□□□ -0.42
TRPM1-208	ENST00000558768	WIZ	O95785	1651 aa		12.41	□□□□□ -0.42
TRPM1-208	ENST00000558768	RUSC2	Q8N2Y8	1516 aa		12.4	□□□□□ -0.42
TRPM1-208	ENST00000558768	SET	Q01105	290 aa	Predicted RBP	12.4	□□□□□ -0.42
TRPM1-208	ENST00000558768	TCERG1	O14776	1098 aa	Known RBP	12.39	□□□□□ -0.43
TRPM1-208	ENST00000558768	PDIA4	P13667	645 aa	Known RBP	12.38	□□□□□ -0.43
TRPM1-208	ENST00000558768	WDR43	Q15061	677 aa	Known RBP eCLIP	12.38	□□□□□ -0.43
TRPM1-208	ENST00000558768	GOLGA6L1	Q8N7Z2	621 aa		12.37	□□□□□ -0.43
TRPM1-208	ENST00000558768	HSP90AB1	P08238	724 aa	Known RBP	12.36	□□□□□ -0.43
TRPM1-208	ENST00000558768	PAK3	O75914	559 aa	Predicted RBP	12.35	□□□□□ -0.43
TRPM1-208	ENST00000558768	IL27	Q8NEV9	243 aa		12.35	□□□□□ -0.43
TRPM1-208	ENST00000558768	NACAD	O15069	1562 aa		12.35	□□□□□ -0.43
TRPM1-208	ENST00000558768	MAP7D2	Q96T17	732 aa		12.35	□□□□□ -0.43
TRPM1-208	ENST00000558768	ZNF771	Q7L3S4	317 aa	Predicted RBP	12.34	□□□□□ -0.43
TRPM1-208	ENST00000558768	GBP4	Q96PP9	640 aa		12.34	□□□□□ -0.43
TRPM1-208	ENST00000558768	HSCB	Q8IWL3	235 aa		12.33	□□□□□ -0.43
TRPM1-208	ENST00000558768	ZBED9	Q6R2W3	1325 aa		12.33	□□□□□ -0.44
TRPM1-208	ENST00000558768	TOP2A	P11388	1531 aa	Known RBP	12.33	□□□□□ -0.44
TRPM1-208	ENST00000558768	GSE1	Q14687	1217 aa		12.32	□□□□□ -0.44
TRPM1-208	ENST00000558768	CASC1	Q6TDU7	716 aa		12.32	□□□□□ -0.44
TRPM1-208	ENST00000558768	MTERF4	Q7Z6M4	381 aa	Known RBP	12.32	□□□□□ -0.44
TRPM1-208	ENST00000558768	P3H3	Q8IVL6	736 aa		12.32	□□□□□ -0.44
TRPM1-208	ENST00000558768	NUDC	Q9Y266	331 aa		12.32	□□□□□ -0.44
TRPM1-208	ENST00000558768	RGS3	P49796	1198 aa		12.3	□□□□□ -0.44
TRPM1-208	ENST00000558768	DRC7	Q8IY82	874 aa		12.3	□□□□□ -0.44
TRPM1-208	ENST00000558768	RAPGEF2	Q9Y4G8	1499 aa		12.3	□□□□□ -0.44
TRPM1-208	ENST00000558768	HSPA5	P11021	654 aa	Known RBP	12.3	□□□□□ -0.44
TRPM1-208	ENST00000558768	RRBP1	Q9P2E9	1410 aa	Known RBP	12.29	□□□□□ -0.44
TRPM1-208	ENST00000558768	GOLGA6L4	A6NEF3	574 aa		12.28	□□□□□ -0.44
TRPM1-208	ENST00000558768	KIF21B	O75037	1637 aa		12.27	□□□□□ -0.44
TRPM1-208	ENST00000558768	GZF1	Q9H116	711 aa	Predicted RBP	12.27	□□□□□ -0.45
TRPM1-208	ENST00000558768	KLHL34	Q8N239	644 aa		12.27	□□□□□ -0.45
TRPM1-208	ENST00000558768	HTATSF1	O43719	755 aa	Known RBP	12.26	□□□□□ -0.45
TRPM1-208	ENST00000558768	KIF27	Q86VH2	1401 aa		12.25	□□□□□ -0.45
TRPM1-208	ENST00000558768	PDE4A	P27815	886 aa		12.25	□□□□□ -0.45

Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms