RNA–Protein interactions for RNA: ENST00000556782.5

PRPF39-211, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 645 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-211ENST00000556782 ATMINO43313 823 aaPredicted RBP12.22□□□□□ -0.45
PRPF39-211ENST00000556782 C7P10643 843 aa12.22□□□□□ -0.45
PRPF39-211ENST00000556782 SLC39A7Q92504 469 aa12.22□□□□□ -0.45
PRPF39-211ENST00000556782 TSPYL2Q9H2G4 693 aaPredicted RBP12.21□□□□□ -0.45
PRPF39-211ENST00000556782 POTEMA6NI47 508 aa12.19□□□□□ -0.46
PRPF39-211ENST00000556782 MAMSTRQ6ZN01 415 aa12.16□□□□□ -0.46
PRPF39-211ENST00000556782 PROM2Q8N271 834 aa12.16□□□□□ -0.46
PRPF39-211ENST00000556782 POTEGQ6S5H5 508 aa12.15□□□□□ -0.46
PRPF39-211ENST00000556782 CCDC61Q9Y6R9 512 aa12.14□□□□□ -0.47
PRPF39-211ENST00000556782 PLEKHG5O94827 1062 aa12.11□□□□□ -0.47
PRPF39-211ENST00000556782 POTEJP0CG39 1038 aa12.1□□□□□ -0.47
PRPF39-211ENST00000556782 ATN1P54259 1190 aaPredicted RBP12.09□□□□□ -0.47
PRPF39-211ENST00000556782 KIF12Q96FN5 646 aa12.09□□□□□ -0.47
PRPF39-211ENST00000556782 SCUBE2Q9NQ36 999 aa12.06□□□□□ -0.48
PRPF39-211ENST00000556782 PCDH10Q9P2E7 1040 aa12.06□□□□□ -0.48
PRPF39-211ENST00000556782 MIER1Q8N108 512 aa12.05□□□□□ -0.48
PRPF39-211ENST00000556782 BMP2KQ9NSY1 1161 aaPredicted RBP12.02□□□□□ -0.49
PRPF39-211ENST00000556782 MAP3K13O43283 966 aa12.01□□□□□ -0.49
PRPF39-211ENST00000556782 TIE1P35590 1138 aa12□□□□□ -0.49
PRPF39-211ENST00000556782 FAM163AQ96GL9 167 aaPredicted RBP11.99□□□□□ -0.49
PRPF39-211ENST00000556782 RASEFQ8IZ41 740 aa11.98□□□□□ -0.49
PRPF39-211ENST00000556782 TRPC6Q9Y210 931 aa11.98□□□□□ -0.49
PRPF39-211ENST00000556782 POTEFA5A3E0 1075 aa11.95□□□□□ -0.5
PRPF39-211ENST00000556782 SEC24BO95487 1268 aa11.93□□□□□ -0.5
PRPF39-211ENST00000556782 CCDC180Q9P1Z9 1646 aa11.93□□□□□ -0.5
PRPF39-211ENST00000556782 PLCD3Q8N3E9 789 aa11.92□□□□□ -0.5
PRPF39-211ENST00000556782 TTLL13PA6NNM8 815 aa11.91□□□□□ -0.5
PRPF39-211ENST00000556782 LCE2DQ5TA82 110 aaPredicted RBP11.91□□□□□ -0.5
PRPF39-211ENST00000556782 SGIP1Q9BQI5 828 aa11.88□□□□□ -0.51
PRPF39-211ENST00000556782 ZBTB47Q9UFB7 747 aaPredicted RBP11.87□□□□□ -0.51
PRPF39-211ENST00000556782 COLQQ9Y215 455 aaPredicted RBP11.87□□□□□ -0.51
PRPF39-211ENST00000556782 PCDHB13Q9Y5F0 798 aa11.86□□□□□ -0.51
PRPF39-211ENST00000556782 IER5LQ5T953 404 aa11.85□□□□□ -0.51
PRPF39-211ENST00000556782 TRIM35Q9UPQ4 493 aa11.84□□□□□ -0.51
PRPF39-211ENST00000556782 NUBP1P53384 320 aa11.79□□□□□ -0.52
PRPF39-211ENST00000556782 ABCC9O60706 1549 aa11.79□□□□□ -0.52
PRPF39-211ENST00000556782 FAM212AQ96EL1 285 aa11.77□□□□□ -0.53
PRPF39-211ENST00000556782 IFNL1Q8IU54 200 aa11.76□□□□□ -0.53
PRPF39-211ENST00000556782 TMEM106CQ9BVX2 250 aa11.74□□□□□ -0.53
PRPF39-211ENST00000556782 SLAIN1Q8ND83 568 aa11.73□□□□□ -0.53
PRPF39-211ENST00000556782 PLCG2P16885 1265 aa11.71□□□□□ -0.53
PRPF39-211ENST00000556782 CDAN1Q8IWY9 1227 aa11.71□□□□□ -0.53
PRPF39-211ENST00000556782 ST18O60284 1047 aa11.65□□□□□ -0.54
PRPF39-211ENST00000556782 IRX5P78411 483 aaPredicted RBP11.64□□□□□ -0.55
PRPF39-211ENST00000556782 DCAF8Q5TAQ9 597 aa11.63□□□□□ -0.55
PRPF39-211ENST00000556782 FKBP8Q14318 412 aa11.61□□□□□ -0.55
PRPF39-211ENST00000556782 OCEL1Q9H607 264 aa11.61□□□□□ -0.55
PRPF39-211ENST00000556782 PYGBP11216 843 aa11.59□□□□□ -0.55
PRPF39-211ENST00000556782 SNPHO15079 494 aa11.54□□□□□ -0.56
PRPF39-211ENST00000556782 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.54□□□□□ -0.56
PRPF39-211ENST00000556782 PCDHB8Q9UN66 801 aa11.54□□□□□ -0.56
PRPF39-211ENST00000556782 TMEM121BQ9BXQ6 578 aaPredicted RBP11.53□□□□□ -0.56
PRPF39-211ENST00000556782 FBXO3Q9UK99 471 aa11.52□□□□□ -0.57
PRPF39-211ENST00000556782 GOLGA2Q08379 1002 aa11.45□□□□□ -0.58
PRPF39-211ENST00000556782 GSE1Q14687 1217 aa11.44□□□□□ -0.58
PRPF39-211ENST00000556782 ZNF467Q7Z7K2 595 aaPredicted RBP11.44□□□□□ -0.58
PRPF39-211ENST00000556782 MKRN3Q13064 507 aaKnown RBP11.43□□□□□ -0.58
PRPF39-211ENST00000556782 KLHL34Q8N239 644 aa11.43□□□□□ -0.58
PRPF39-211ENST00000556782 MARVELD3Q96A59 401 aa11.43□□□□□ -0.58
PRPF39-211ENST00000556782 MMRN1Q13201 1228 aa11.42□□□□□ -0.58
PRPF39-211ENST00000556782 C3orf67Q6ZVT6 689 aa11.42□□□□□ -0.58
PRPF39-211ENST00000556782 SPNS2Q8IVW8 549 aa11.42□□□□□ -0.58
PRPF39-211ENST00000556782 L3MBTL3Q96JM7 780 aaPredicted RBP11.42□□□□□ -0.58
PRPF39-211ENST00000556782 PDCD7Q8N8D1 485 aaKnown RBP11.4□□□□□ -0.58
PRPF39-211ENST00000556782 CHRM1P11229 460 aaPredicted RBP11.36□□□□□ -0.59
PRPF39-211ENST00000556782 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.36□□□□□ -0.597e-6■■□□□ 12.8
PRPF39-211ENST00000556782 VASPP50552 380 aaPredicted RBP11.34□□□□□ -0.59
PRPF39-211ENST00000556782 EMP3P54852 163 aa11.34□□□□□ -0.59
PRPF39-211ENST00000556782 PSEN1P49768 467 aa11.33□□□□□ -0.6
PRPF39-211ENST00000556782 RB1CC1Q8TDY2 1594 aa11.28□□□□□ -0.6
PRPF39-211ENST00000556782 FAM205CA6NFA0 338 aa11.26□□□□□ -0.61
PRPF39-211ENST00000556782 PDAP1Q13442 181 aaKnown RBP11.26□□□□□ -0.61
PRPF39-211ENST00000556782 HS3ST6Q96QI5 342 aa11.25□□□□□ -0.61
PRPF39-211ENST00000556782 G3V3G9 751 aa11.24□□□□□ -0.61
PRPF39-211ENST00000556782 ILDR1Q86SU0 546 aaPredicted RBP11.24□□□□□ -0.61
PRPF39-211ENST00000556782 NACADO15069 1562 aa11.24□□□□□ -0.61
PRPF39-211ENST00000556782 POTEB3A0JP26 581 aa11.21□□□□□ -0.61
PRPF39-211ENST00000556782 DPY19L2Q6NUT2 758 aa11.21□□□□□ -0.61
PRPF39-211ENST00000556782 POTEBQ6S5H4 581 aa11.21□□□□□ -0.61
PRPF39-211ENST00000556782 KRTAP3-3Q9BYR6 98 aa11.2□□□□□ -0.62
PRPF39-211ENST00000556782 KRTAP3-2Q9BYR7 98 aa11.2□□□□□ -0.62
PRPF39-211ENST00000556782 CABP2Q9NPB3 220 aa11.2□□□□□ -0.62
PRPF39-211ENST00000556782 BOLA1Q9Y3E2 137 aa11.19□□□□□ -0.62
PRPF39-211ENST00000556782 CIZ1Q9ULV3 898 aaPredicted RBP11.18□□□□□ -0.62
PRPF39-211ENST00000556782 SPOCK2Q92563 424 aa11.17□□□□□ -0.62
PRPF39-211ENST00000556782 ZNF710Q8N1W2 664 aa11.14□□□□□ -0.63
PRPF39-211ENST00000556782 DCAF8L2P0C7V8 631 aa11.13□□□□□ -0.63
PRPF39-211ENST00000556782 HOXB3P14651 431 aaPredicted RBP11.13□□□□□ -0.63
PRPF39-211ENST00000556782 MYO15BQ96JP2 1530 aa11.13□□□□□ -0.63
PRPF39-211ENST00000556782 HOXB1P14653 301 aaPredicted RBP11.1□□□□□ -0.63
PRPF39-211ENST00000556782 DOK7Q18PE1 504 aa11.1□□□□□ -0.63
PRPF39-211ENST00000556782 IFNLR1Q8IU57 520 aaPredicted RBP11.1□□□□□ -0.63
PRPF39-211ENST00000556782 ZCCHC6Q5VYS8 1495 aaKnown RBP11.09□□□□□ -0.63
PRPF39-211ENST00000556782 ERBB3P21860 1342 aa11.08□□□□□ -0.64
PRPF39-211ENST00000556782 RIMBP2O15034 1052 aa11.05□□□□□ -0.64
PRPF39-211ENST00000556782 DCAF1Q9Y4B6 1507 aa11.03□□□□□ -0.64
PRPF39-211ENST00000556782 EFCAB3Q8N7B9 438 aa11.02□□□□□ -0.65
PRPF39-211ENST00000556782 UNC13AQ9UPW8 1703 aa11.01□□□□□ -0.65
PRPF39-211ENST00000556782 TRIM41Q8WV44 630 aa11□□□□□ -0.65
PRPF39-211ENST00000556782 VARS2Q5ST30 1063 aaKnown RBP10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms