RNA–Protein interactions for RNA: ENST00000556622.1

CPSF2-205, Transcript of cleavage and polyadenylation specific factor 2, humanhuman

TSL 5

Gene CPSF2, Length 469 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF2-205ENST00000556622 METRNQ9UJH8 293 aa13.19□□□□□ -0.3
CPSF2-205ENST00000556622 NPM1P06748 294 aaKnown RBP eCLIP13.17□□□□□ -0.3
CPSF2-205ENST00000556622 ASTLQ6HA08 431 aaPredicted RBP13.16□□□□□ -0.3
CPSF2-205ENST00000556622 ATMINO43313 823 aaPredicted RBP13.15□□□□□ -0.3
CPSF2-205ENST00000556622 LCE2DQ5TA82 110 aaPredicted RBP13.1□□□□□ -0.31
CPSF2-205ENST00000556622 SLC39A7Q92504 469 aa13.1□□□□□ -0.31
CPSF2-205ENST00000556622 C7P10643 843 aa13.08□□□□□ -0.32
CPSF2-205ENST00000556622 TSPYL2Q9H2G4 693 aaPredicted RBP13.03□□□□□ -0.32
CPSF2-205ENST00000556622 ATN1P54259 1190 aaPredicted RBP13.02□□□□□ -0.33
CPSF2-205ENST00000556622 FAM163AQ96GL9 167 aaPredicted RBP12.99□□□□□ -0.33
CPSF2-205ENST00000556622 PCDH10Q9P2E7 1040 aa12.99□□□□□ -0.33
CPSF2-205ENST00000556622 POTEFA5A3E0 1075 aa12.98□□□□□ -0.33
CPSF2-205ENST00000556622 MAMSTRQ6ZN01 415 aa12.98□□□□□ -0.33
CPSF2-205ENST00000556622 CCDC61Q9Y6R9 512 aa12.98□□□□□ -0.33
CPSF2-205ENST00000556622 TRPC6Q9Y210 931 aa12.97□□□□□ -0.33
CPSF2-205ENST00000556622 KIF12Q96FN5 646 aa12.93□□□□□ -0.34
CPSF2-205ENST00000556622 BMP2KQ9NSY1 1161 aaPredicted RBP12.93□□□□□ -0.34
CPSF2-205ENST00000556622 SCUBE2Q9NQ36 999 aa12.92□□□□□ -0.34
CPSF2-205ENST00000556622 MAP3K13O43283 966 aa12.85□□□□□ -0.35
CPSF2-205ENST00000556622 PROM2Q8N271 834 aa12.85□□□□□ -0.35
CPSF2-205ENST00000556622 COLQQ9Y215 455 aaPredicted RBP12.83□□□□□ -0.36
CPSF2-205ENST00000556622 RASEFQ8IZ41 740 aa12.8□□□□□ -0.36
CPSF2-205ENST00000556622 TIE1P35590 1138 aa12.78□□□□□ -0.36
CPSF2-205ENST00000556622 TTLL13PA6NNM8 815 aa12.76□□□□□ -0.37
CPSF2-205ENST00000556622 SEC24BO95487 1268 aa12.72□□□□□ -0.37
CPSF2-205ENST00000556622 CDAN1Q8IWY9 1227 aa12.71□□□□□ -0.37
CPSF2-205ENST00000556622 TRIM35Q9UPQ4 493 aa12.68□□□□□ -0.38
CPSF2-205ENST00000556622 MIER1Q8N108 512 aa12.67□□□□□ -0.38
CPSF2-205ENST00000556622 ST18O60284 1047 aa12.62□□□□□ -0.39
CPSF2-205ENST00000556622 IER5LQ5T953 404 aa12.61□□□□□ -0.39
CPSF2-205ENST00000556622 SLAIN1Q8ND83 568 aa12.61□□□□□ -0.39
CPSF2-205ENST00000556622 PCDHB13Q9Y5F0 798 aa12.61□□□□□ -0.39
CPSF2-205ENST00000556622 PLEKHG5O94827 1062 aa12.59□□□□□ -0.39
CPSF2-205ENST00000556622 FKBP8Q14318 412 aa12.59□□□□□ -0.39
CPSF2-205ENST00000556622 IFNL1Q8IU54 200 aa12.57□□□□□ -0.4
CPSF2-205ENST00000556622 SGIP1Q9BQI5 828 aa12.54□□□□□ -0.4
CPSF2-205ENST00000556622 NUBP1P53384 320 aa12.53□□□□□ -0.4
CPSF2-205ENST00000556622 TMEM106CQ9BVX2 250 aa12.52□□□□□ -0.41
CPSF2-205ENST00000556622 PLCD3Q8N3E9 789 aa12.51□□□□□ -0.41
CPSF2-205ENST00000556622 PLCG2P16885 1265 aa12.48□□□□□ -0.41
CPSF2-205ENST00000556622 IRX5P78411 483 aaPredicted RBP12.47□□□□□ -0.41
CPSF2-205ENST00000556622 MMRN1Q13201 1228 aa12.45□□□□□ -0.42
CPSF2-205ENST00000556622 SPNS2Q8IVW8 549 aa12.43□□□□□ -0.42
CPSF2-205ENST00000556622 MARVELD3Q96A59 401 aa12.39□□□□□ -0.43
CPSF2-205ENST00000556622 FAM212AQ96EL1 285 aa12.38□□□□□ -0.43
CPSF2-205ENST00000556622 TMEM121BQ9BXQ6 578 aaPredicted RBP12.35□□□□□ -0.43
CPSF2-205ENST00000556622 OCEL1Q9H607 264 aa12.35□□□□□ -0.43
CPSF2-205ENST00000556622 ZBTB47Q9UFB7 747 aaPredicted RBP12.35□□□□□ -0.43
CPSF2-205ENST00000556622 PYGBP11216 843 aa12.31□□□□□ -0.44
CPSF2-205ENST00000556622 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.3□□□□□ -0.44
CPSF2-205ENST00000556622 PCDHB8Q9UN66 801 aa12.3□□□□□ -0.44
CPSF2-205ENST00000556622 SNPHO15079 494 aa12.26□□□□□ -0.45
CPSF2-205ENST00000556622 FBXO3Q9UK99 471 aa12.25□□□□□ -0.45
CPSF2-205ENST00000556622 DCAF8Q5TAQ9 597 aa12.24□□□□□ -0.45
CPSF2-205ENST00000556622 POTEB3A0JP26 581 aa12.23□□□□□ -0.45
CPSF2-205ENST00000556622 POTEBQ6S5H4 581 aa12.23□□□□□ -0.45
CPSF2-205ENST00000556622 PDCD7Q8N8D1 485 aaKnown RBP12.22□□□□□ -0.45
CPSF2-205ENST00000556622 EMP3P54852 163 aa12.19□□□□□ -0.46
CPSF2-205ENST00000556622 KRTAP3-3Q9BYR6 98 aa12.19□□□□□ -0.46
CPSF2-205ENST00000556622 KRTAP3-2Q9BYR7 98 aa12.19□□□□□ -0.46
CPSF2-205ENST00000556622 C3orf67Q6ZVT6 689 aa12.15□□□□□ -0.46
CPSF2-205ENST00000556622 HS3ST6Q96QI5 342 aa12.15□□□□□ -0.46
CPSF2-205ENST00000556622 FAM205CA6NFA0 338 aa12.13□□□□□ -0.47
CPSF2-205ENST00000556622 MKRN3Q13064 507 aaKnown RBP12.07□□□□□ -0.48
CPSF2-205ENST00000556622 L3MBTL3Q96JM7 780 aaPredicted RBP12.07□□□□□ -0.48
CPSF2-205ENST00000556622 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.06□□□□□ -0.483e-7■■■□□ 16.7
CPSF2-205ENST00000556622 VASPP50552 380 aaPredicted RBP12.05□□□□□ -0.48
CPSF2-205ENST00000556622 GOLGA2Q08379 1002 aa12.05□□□□□ -0.48
CPSF2-205ENST00000556622 DPY19L2Q6NUT2 758 aa12.04□□□□□ -0.48
CPSF2-205ENST00000556622 ZNF467Q7Z7K2 595 aaPredicted RBP12.02□□□□□ -0.49
CPSF2-205ENST00000556622 PSEN1P49768 467 aa12□□□□□ -0.49
CPSF2-205ENST00000556622 HOXB3P14651 431 aaPredicted RBP11.98□□□□□ -0.49
CPSF2-205ENST00000556622 ILDR1Q86SU0 546 aaPredicted RBP11.97□□□□□ -0.49
CPSF2-205ENST00000556622 GSE1Q14687 1217 aa11.95□□□□□ -0.5
CPSF2-205ENST00000556622 CHRM1P11229 460 aaPredicted RBP11.92□□□□□ -0.5
CPSF2-205ENST00000556622 KLHL34Q8N239 644 aa11.92□□□□□ -0.5
CPSF2-205ENST00000556622 IFNLR1Q8IU57 520 aaPredicted RBP11.91□□□□□ -0.5
CPSF2-205ENST00000556622 BOLA1Q9Y3E2 137 aa11.89□□□□□ -0.51
CPSF2-205ENST00000556622 CABP2Q9NPB3 220 aa11.88□□□□□ -0.51
CPSF2-205ENST00000556622 HOXB1P14653 301 aaPredicted RBP11.87□□□□□ -0.51
CPSF2-205ENST00000556622 PDAP1Q13442 181 aaKnown RBP11.86□□□□□ -0.51
CPSF2-205ENST00000556622 ERBB3P21860 1342 aa11.85□□□□□ -0.51
CPSF2-205ENST00000556622 ZNF710Q8N1W2 664 aa11.84□□□□□ -0.51
CPSF2-205ENST00000556622 RNF166Q96A37 237 aaPredicted RBP11.83□□□□□ -0.52
CPSF2-205ENST00000556622 G3V3G9 751 aa11.81□□□□□ -0.52
CPSF2-205ENST00000556622 DOK7Q18PE1 504 aa11.79□□□□□ -0.52
CPSF2-205ENST00000556622 VARS2Q5ST30 1063 aaKnown RBP11.79□□□□□ -0.52
CPSF2-205ENST00000556622 SPOCK2Q92563 424 aa11.76□□□□□ -0.53
CPSF2-205ENST00000556622 MYT1LQ9UL68 1186 aa11.75□□□□□ -0.53
CPSF2-205ENST00000556622 TMEM92Q6UXU6 159 aa11.73□□□□□ -0.53
CPSF2-205ENST00000556622 CIZ1Q9ULV3 898 aaPredicted RBP11.7□□□□□ -0.54
CPSF2-205ENST00000556622 EFCAB3Q8N7B9 438 aa11.69□□□□□ -0.54
CPSF2-205ENST00000556622 RIMBP2O15034 1052 aa11.68□□□□□ -0.54
CPSF2-205ENST00000556622 CCDC180Q9P1Z9 1646 aa11.68□□□□□ -0.54
CPSF2-205ENST00000556622 ZNF687Q8N1G0 1237 aa11.67□□□□□ -0.54
CPSF2-205ENST00000556622 GPR153Q6NV75 609 aa11.65□□□□□ -0.54
CPSF2-205ENST00000556622 MICALL2Q8IY33 904 aa11.65□□□□□ -0.54
CPSF2-205ENST00000556622 ZSWIM6Q9HCJ5 1215 aa11.6□□□□□ -0.55
CPSF2-205ENST00000556622 ABCC9O60706 1549 aa11.58□□□□□ -0.56
CPSF2-205ENST00000556622 ARSIQ5FYB1 569 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms