RNA–Protein interactions for RNA: ENST00000555379.1

LINC00641-201, long intergenic non-protein coding RNA 641, humanhuman

Gene LINC00641, Length 5,425 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00641-201ENST00000555379 CARMIL1Q5VZK9 1371 aa11.33□□□□□ -0.6
LINC00641-201ENST00000555379 CFDP1Q9UEE9 299 aaPredicted RBP11.33□□□□□ -0.6
LINC00641-201ENST00000555379 FMN1Q68DA7 1419 aa11.32□□□□□ -0.6
LINC00641-201ENST00000555379 CECR2Q9BXF3 1484 aa11.32□□□□□ -0.6
LINC00641-201ENST00000555379 RSPH4AQ5TD94 716 aa11.31□□□□□ -0.6
LINC00641-201ENST00000555379 CUX2O14529 1486 aa11.31□□□□□ -0.6
LINC00641-201ENST00000555379 CCNB3Q8WWL7 1395 aa11.31□□□□□ -0.6
LINC00641-201ENST00000555379 NPM2Q86SE8 214 aaKnown RBP11.3□□□□□ -0.6
LINC00641-201ENST00000555379 ANP32EQ9BTT0 268 aa11.29□□□□□ -0.6
LINC00641-201ENST00000555379 ARID3CA6NKF2 412 aa11.28□□□□□ -0.6
LINC00641-201ENST00000555379 TIMELESSQ9UNS1 1208 aa11.28□□□□□ -0.6
LINC00641-201ENST00000555379 SOGA1O94964 1423 aa11.27□□□□□ -0.61
LINC00641-201ENST00000555379 ARID4BQ4LE39 1312 aaPredicted RBP11.26□□□□□ -0.61
LINC00641-201ENST00000555379 CFAP53Q96M91 514 aa11.26□□□□□ -0.61
LINC00641-201ENST00000555379 PNNQ9H307 717 aaKnown RBP11.25□□□□□ -0.61
LINC00641-201ENST00000555379 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.24□□□□□ -0.61
LINC00641-201ENST00000555379 WDR43Q15061 677 aaKnown RBP eCLIP11.23□□□□□ -0.61
LINC00641-201ENST00000555379 ATAD2BQ9ULI0 1458 aa11.23□□□□□ -0.61
LINC00641-201ENST00000555379 SMARCA4P51532 1647 aa11.23□□□□□ -0.61
LINC00641-201ENST00000555379 CHMP4BQ9H444 224 aaKnown RBP11.22□□□□□ -0.61
LINC00641-201ENST00000555379 TNNT2P45379 298 aaPredicted RBP11.22□□□□□ -0.61
LINC00641-201ENST00000555379 KCNH8Q96L42 1107 aa11.21□□□□□ -0.61
LINC00641-201ENST00000555379 CHMP4AQ9BY43 222 aa11.21□□□□□ -0.61
LINC00641-201ENST00000555379 EIF4G1Q04637 1599 aaKnown RBP11.2□□□□□ -0.62
LINC00641-201ENST00000555379 UPF2Q9HAU5 1272 aaKnown RBP11.2□□□□□ -0.62
LINC00641-201ENST00000555379 CCDC88BA6NC98 1476 aa11.2□□□□□ -0.62
LINC00641-201ENST00000555379 EIF4G2P78344 907 aaKnown RBP eCLIP11.2□□□□□ -0.62
LINC00641-201ENST00000555379 EFCAB2Q5VUJ9 269 aa11.2□□□□□ -0.62
LINC00641-201ENST00000555379 C14orf37Q86TY3 774 aa11.19□□□□□ -0.62
LINC00641-201ENST00000555379 HAP1P54257 671 aaPredicted RBP11.18□□□□□ -0.62
LINC00641-201ENST00000555379 NCLP19338 710 aaKnown RBP11.18□□□□□ -0.62
LINC00641-201ENST00000555379 CNGB1Q14028 1251 aaPredicted RBP11.17□□□□□ -0.62
LINC00641-201ENST00000555379 MROH2BQ7Z745 1585 aa11.17□□□□□ -0.62
LINC00641-201ENST00000555379 MYH16Q9H6N6 1097 aa11.17□□□□□ -0.62
LINC00641-201ENST00000555379 CCDC18Q5T9S5 1454 aa11.16□□□□□ -0.62
LINC00641-201ENST00000555379 RAPGEF2Q9Y4G8 1499 aa11.16□□□□□ -0.62
LINC00641-201ENST00000555379 ARHGAP35Q9NRY4 1499 aa11.16□□□□□ -0.62
LINC00641-201ENST00000555379 ANP32AP39687 249 aaKnown RBP11.16□□□□□ -0.62
LINC00641-201ENST00000555379 NCAPD3P42695 1498 aa11.16□□□□□ -0.62
LINC00641-201ENST00000555379 NUDCQ9Y266 331 aa11.14□□□□□ -0.63
LINC00641-201ENST00000555379 TMC1Q8TDI8 760 aa11.14□□□□□ -0.63
LINC00641-201ENST00000555379 CHIC2Q9UKJ5 165 aa11.14□□□□□ -0.63
LINC00641-201ENST00000555379 MS4A1P11836 297 aa11.13□□□□□ -0.63
LINC00641-201ENST00000555379 FANCD2Q9BXW9 1451 aa11.12□□□□□ -0.63
LINC00641-201ENST00000555379 ANKRD30AQ9BXX3 1397 aa11.12□□□□□ -0.63
LINC00641-201ENST00000555379 VPS8Q8N3P4 1428 aa11.11□□□□□ -0.63
LINC00641-201ENST00000555379 CDK11BP21127 795 aaKnown RBP11.1□□□□□ -0.63
LINC00641-201ENST00000555379 TRHP20396 242 aaPredicted RBP11.09□□□□□ -0.63
LINC00641-201ENST00000555379 EIF3AQ14152 1382 aaKnown RBP11.09□□□□□ -0.63
LINC00641-201ENST00000555379 UACAQ9BZF9 1416 aa11.09□□□□□ -0.63
LINC00641-201ENST00000555379 POGKQ9P215 609 aa11.08□□□□□ -0.64
LINC00641-201ENST00000555379 PRKCSHP14314 528 aaPredicted RBP11.08□□□□□ -0.64
LINC00641-201ENST00000555379 KNSTRNQ9Y448 316 aa11.07□□□□□ -0.64
LINC00641-201ENST00000555379 SCAF1Q9H7N4 1312 aaKnown RBP11.07□□□□□ -0.64
LINC00641-201ENST00000555379 ANP32BQ92688 251 aaKnown RBP11.07□□□□□ -0.64
LINC00641-201ENST00000555379 TRIM44Q96DX7 344 aaPredicted RBP11.07□□□□□ -0.64
LINC00641-201ENST00000555379 CFAP44Q96MT7 982 aa11.07□□□□□ -0.64
LINC00641-201ENST00000555379 HMGXB3Q12766 1538 aa11.06□□□□□ -0.64
LINC00641-201ENST00000555379 STAC3Q96MF2 364 aa11.06□□□□□ -0.64
LINC00641-201ENST00000555379 OSCARQ8IYS5 282 aa11.05□□□□□ -0.64
LINC00641-201ENST00000555379 RRP7BPQ9NSQ0 103 aa11.04□□□□□ -0.64
LINC00641-201ENST00000555379 TMF1P82094 1093 aa11.03□□□□□ -0.64
LINC00641-201ENST00000555379 PLPPR3Q6T4P5 718 aa11.03□□□□□ -0.64
LINC00641-201ENST00000555379 EID1Q9Y6B2 187 aa11.03□□□□□ -0.64
LINC00641-201ENST00000555379 MAPK8IP3Q9UPT6 1336 aa11.02□□□□□ -0.64
LINC00641-201ENST00000555379 KDM2AQ9Y2K7 1162 aa11.02□□□□□ -0.65
LINC00641-201ENST00000555379 CALD1Q05682 793 aaKnown RBP11.01□□□□□ -0.65
LINC00641-201ENST00000555379 CARD11Q9BXL7 1154 aa11□□□□□ -0.65
LINC00641-201ENST00000555379 HDAC5Q9UQL6 1122 aa11□□□□□ -0.65
LINC00641-201ENST00000555379 PTPRGP23470 1445 aa10.99□□□□□ -0.65
LINC00641-201ENST00000555379 IFT140Q96RY7 1462 aa10.99□□□□□ -0.65
LINC00641-201ENST00000555379 HDGFL2Q7Z4V5 671 aaPredicted RBP10.99□□□□□ -0.65
LINC00641-201ENST00000555379 ERICH6BQ5W0A0 696 aa10.98□□□□□ -0.65
LINC00641-201ENST00000555379 TDRD9Q8NDG6 1382 aaKnown RBP10.98□□□□□ -0.65
LINC00641-201ENST00000555379 SETD5Q9C0A6 1442 aa10.98□□□□□ -0.65
LINC00641-201ENST00000555379 MRC2Q9UBG0 1479 aa10.98□□□□□ -0.65
LINC00641-201ENST00000555379 HSP90AA1P07900 732 aaKnown RBP10.98□□□□□ -0.65
LINC00641-201ENST00000555379 JPH4Q96JJ6 628 aa10.98□□□□□ -0.65
LINC00641-201ENST00000555379 MRS2Q9HD23 443 aa10.98□□□□□ -0.65
LINC00641-201ENST00000555379 CASC1Q6TDU7 716 aa10.97□□□□□ -0.65
LINC00641-201ENST00000555379 GAPVD1Q14C86 1478 aa10.97□□□□□ -0.65
LINC00641-201ENST00000555379 WIZO95785 1651 aa10.97□□□□□ -0.65
LINC00641-201ENST00000555379 SPAG9O60271 1321 aaKnown RBP10.97□□□□□ -0.65
LINC00641-201ENST00000555379 GRIN2BQ13224 1484 aa10.96□□□□□ -0.65
LINC00641-201ENST00000555379 PODXL2Q9NZ53 605 aa10.96□□□□□ -0.65
LINC00641-201ENST00000555379 CUX1P39880 1505 aa10.96□□□□□ -0.66
LINC00641-201ENST00000555379 HMGB2P26583 209 aaKnown RBP10.95□□□□□ -0.66
LINC00641-201ENST00000555379 HNRNPUQ00839 825 aaKnown RBP eCLIP10.94□□□□□ -0.66
LINC00641-201ENST00000555379 AEBP2Q6ZN18 517 aaPredicted RBP10.94□□□□□ -0.66
LINC00641-201ENST00000555379 PLEKHH2Q8IVE3 1493 aa10.93□□□□□ -0.66
LINC00641-201ENST00000555379 ROCK2O75116 1388 aaKnown RBP10.93□□□□□ -0.66
LINC00641-201ENST00000555379 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.91□□□□□ -0.66
LINC00641-201ENST00000555379 ANO8Q9HCE9 1232 aaPredicted RBP10.91□□□□□ -0.66
LINC00641-201ENST00000555379 DDX10Q13206 875 aaKnown RBP10.89□□□□□ -0.67
LINC00641-201ENST00000555379 NBR1Q14596 966 aa10.89□□□□□ -0.67
LINC00641-201ENST00000555379 RGL3Q3MIN7 710 aa10.89□□□□□ -0.67
LINC00641-201ENST00000555379 TERF2IPQ9NYB0 399 aa10.89□□□□□ -0.67
LINC00641-201ENST00000555379 EFCAB5A4FU69 1503 aa10.89□□□□□ -0.67
LINC00641-201ENST00000555379 FGD5Q6ZNL6 1462 aa10.88□□□□□ -0.67
LINC00641-201ENST00000555379 DDRGK1Q96HY6 314 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms