RNA–Protein interactions for RNA: ENST00000554439.5

PRPF39-207, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 2,982 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-207ENST00000554439 PAK3O75914 559 aaPredicted RBP4.98□□□□□ -1.61
PRPF39-207ENST00000554439 POTEJP0CG39 1038 aa4.95□□□□□ -1.62
PRPF39-207ENST00000554439 AMER1Q5JTC6 1135 aaPredicted RBP4.95□□□□□ -1.62
PRPF39-207ENST00000554439 ATF5Q9Y2D1 282 aaPredicted RBP4.94□□□□□ -1.62
PRPF39-207ENST00000554439 TMEM121BQ9BXQ6 578 aaPredicted RBP4.93□□□□□ -1.62
PRPF39-207ENST00000554439 PELP1Q8IZL8 1130 aaKnown RBP4.93□□□□□ -1.62
PRPF39-207ENST00000554439 ATMINO43313 823 aaPredicted RBP4.92□□□□□ -1.62
PRPF39-207ENST00000554439 ATXN8OSP0DMR3 200 aa4.9□□□□□ -1.62
PRPF39-207ENST00000554439 NISCHQ9Y2I1 1504 aa4.88□□□□□ -1.63
PRPF39-207ENST00000554439 SNPHO15079 494 aa4.86□□□□□ -1.63
PRPF39-207ENST00000554439 PABPN1Q86U42 306 aaKnown RBP eCLIP4.85□□□□□ -1.632e-9■■■□□ 16.8
PRPF39-207ENST00000554439 ST18O60284 1047 aa4.85□□□□□ -1.63
PRPF39-207ENST00000554439 NPM1P06748 294 aaKnown RBP eCLIP4.84□□□□□ -1.63
PRPF39-207ENST00000554439 FKBP8Q14318 412 aa4.83□□□□□ -1.64
PRPF39-207ENST00000554439 STAG3Q9UJ98 1225 aa4.83□□□□□ -1.64
PRPF39-207ENST00000554439 PHF12Q96QT6 1004 aa4.81□□□□□ -1.64
PRPF39-207ENST00000554439 CREBZFQ9NS37 354 aa4.78□□□□□ -1.64
PRPF39-207ENST00000554439 IER5LQ5T953 404 aa4.78□□□□□ -1.64
PRPF39-207ENST00000554439 MS4A3Q96HJ5 214 aa4.77□□□□□ -1.65
PRPF39-207ENST00000554439 TIE1P35590 1138 aa4.75□□□□□ -1.65
PRPF39-207ENST00000554439 ATN1P54259 1190 aaPredicted RBP4.75□□□□□ -1.65
PRPF39-207ENST00000554439 MKRN4PQ13434 485 aaPredicted RBP4.75□□□□□ -1.65
PRPF39-207ENST00000554439 SLAIN1Q8ND83 568 aa4.75□□□□□ -1.65
PRPF39-207ENST00000554439 POTEFA5A3E0 1075 aa4.74□□□□□ -1.65
PRPF39-207ENST00000554439 SEC24BO95487 1268 aa4.73□□□□□ -1.65
PRPF39-207ENST00000554439 PTGER2P43116 358 aa4.69□□□□□ -1.66
PRPF39-207ENST00000554439 BMP2KQ9NSY1 1161 aaPredicted RBP4.68□□□□□ -1.66
PRPF39-207ENST00000554439 RNF166Q96A37 237 aaPredicted RBP4.67□□□□□ -1.66
PRPF39-207ENST00000554439 KRTAP3-3Q9BYR6 98 aa4.67□□□□□ -1.66
PRPF39-207ENST00000554439 KRTAP3-2Q9BYR7 98 aa4.67□□□□□ -1.66
PRPF39-207ENST00000554439 EMP3P54852 163 aa4.64□□□□□ -1.67
PRPF39-207ENST00000554439 COLQQ9Y215 455 aaPredicted RBP4.62□□□□□ -1.67
PRPF39-207ENST00000554439 SGIP1Q9BQI5 828 aa4.62□□□□□ -1.67
PRPF39-207ENST00000554439 KIF12Q96FN5 646 aa4.61□□□□□ -1.67
PRPF39-207ENST00000554439 EIF2AK3Q9NZJ5 1116 aaKnown RBP4.61□□□□□ -1.67
PRPF39-207ENST00000554439 HS3ST6Q96QI5 342 aa4.61□□□□□ -1.67
PRPF39-207ENST00000554439 RGS20O76081 388 aa4.59□□□□□ -1.67
PRPF39-207ENST00000554439 PLCG2P16885 1265 aa4.59□□□□□ -1.67
PRPF39-207ENST00000554439 MNX1P50219 401 aaPredicted RBP4.59□□□□□ -1.68
PRPF39-207ENST00000554439 PLCB2Q00722 1185 aa4.58□□□□□ -1.68
PRPF39-207ENST00000554439 MYT1LQ9UL68 1186 aa4.58□□□□□ -1.68
PRPF39-207ENST00000554439 TTLL13PA6NNM8 815 aa4.58□□□□□ -1.68
PRPF39-207ENST00000554439 CCDC61Q9Y6R9 512 aa4.58□□□□□ -1.68
PRPF39-207ENST00000554439 MARVELD3Q96A59 401 aa4.57□□□□□ -1.68
PRPF39-207ENST00000554439 PROM2Q8N271 834 aa4.55□□□□□ -1.68
PRPF39-207ENST00000554439 FAM205CA6NFA0 338 aa4.53□□□□□ -1.68
PRPF39-207ENST00000554439 FBXO3Q9UK99 471 aa4.53□□□□□ -1.68
PRPF39-207ENST00000554439 TRIM35Q9UPQ4 493 aa4.53□□□□□ -1.68
PRPF39-207ENST00000554439 SPDYE4A6NLX3 237 aa4.52□□□□□ -1.69
PRPF39-207ENST00000554439 IFNLR1Q8IU57 520 aaPredicted RBP4.51□□□□□ -1.69
PRPF39-207ENST00000554439 POTEB3A0JP26 581 aa4.51□□□□□ -1.69
PRPF39-207ENST00000554439 POTEBQ6S5H4 581 aa4.51□□□□□ -1.69
PRPF39-207ENST00000554439 VASPP50552 380 aaPredicted RBP4.5□□□□□ -1.69
PRPF39-207ENST00000554439 IRX5P78411 483 aaPredicted RBP4.5□□□□□ -1.69
PRPF39-207ENST00000554439 OCEL1Q9H607 264 aa4.5□□□□□ -1.69
PRPF39-207ENST00000554439 PKD2Q13563 968 aa4.49□□□□□ -1.69
PRPF39-207ENST00000554439 HAP1P54257 671 aaPredicted RBP4.48□□□□□ -1.69
PRPF39-207ENST00000554439 L3MBTL3Q96JM7 780 aaPredicted RBP4.48□□□□□ -1.69
PRPF39-207ENST00000554439 TSPYL2Q9H2G4 693 aaPredicted RBP4.48□□□□□ -1.69
PRPF39-207ENST00000554439 PLA2G2EQ9NZK7 142 aa4.48□□□□□ -1.69
PRPF39-207ENST00000554439 MAP3K13O43283 966 aa4.47□□□□□ -1.69
PRPF39-207ENST00000554439 PRKCSHP14314 528 aaPredicted RBP4.47□□□□□ -1.69
PRPF39-207ENST00000554439 TRPC6Q9Y210 931 aa4.47□□□□□ -1.69
PRPF39-207ENST00000554439 HOXB1P14653 301 aaPredicted RBP4.45□□□□□ -1.7
PRPF39-207ENST00000554439 BCANQ96GW7 911 aa4.44□□□□□ -1.7
PRPF39-207ENST00000554439 C3orf67Q6ZVT6 689 aa4.44□□□□□ -1.7
PRPF39-207ENST00000554439 TAOK2Q9UL54 1235 aa4.44□□□□□ -1.7
PRPF39-207ENST00000554439 HCSTQ9UBK5 93 aa4.43□□□□□ -1.7
PRPF39-207ENST00000554439 VSIG10Q8N0Z9 540 aa4.43□□□□□ -1.7
PRPF39-207ENST00000554439 IRX2Q9BZI1 471 aaPredicted RBP4.42□□□□□ -1.7
PRPF39-207ENST00000554439 KDM2AQ9Y2K7 1162 aa4.42□□□□□ -1.7
PRPF39-207ENST00000554439 ERBB3P21860 1342 aa4.42□□□□□ -1.7
PRPF39-207ENST00000554439 DCAF8L2P0C7V8 631 aa4.42□□□□□ -1.7
PRPF39-207ENST00000554439 ZNF687Q8N1G0 1237 aa4.41□□□□□ -1.7
PRPF39-207ENST00000554439 TMEM106CQ9BVX2 250 aa4.4□□□□□ -1.71
PRPF39-207ENST00000554439 DOK7Q18PE1 504 aa4.39□□□□□ -1.71
PRPF39-207ENST00000554439 IFFO2Q5TF58 517 aa4.38□□□□□ -1.71
PRPF39-207ENST00000554439 PLEKHG5O94827 1062 aa4.38□□□□□ -1.71
PRPF39-207ENST00000554439 ZSWIM6Q9HCJ5 1215 aa4.38□□□□□ -1.71
PRPF39-207ENST00000554439 PCDHB13Q9Y5F0 798 aa4.38□□□□□ -1.71
PRPF39-207ENST00000554439 RIMBP2O15034 1052 aa4.38□□□□□ -1.71
PRPF39-207ENST00000554439 BBXQ8WY36 941 aaPredicted RBP4.37□□□□□ -1.71
PRPF39-207ENST00000554439 SHROOM4Q9ULL8 1493 aa4.37□□□□□ -1.71
PRPF39-207ENST00000554439 ZNF710Q8N1W2 664 aa4.36□□□□□ -1.71
PRPF39-207ENST00000554439 TPRNQ4KMQ1 711 aa4.35□□□□□ -1.71
PRPF39-207ENST00000554439 PAXIP1Q6ZW49 1069 aaPredicted RBP4.34□□□□□ -1.71
PRPF39-207ENST00000554439 ECM2O94769 699 aaPredicted RBP4.34□□□□□ -1.72
PRPF39-207ENST00000554439 RGL2O15211 777 aa4.33□□□□□ -1.72
PRPF39-207ENST00000554439 SPOCK2Q92563 424 aa4.33□□□□□ -1.72
PRPF39-207ENST00000554439 HOXB3P14651 431 aaPredicted RBP4.33□□□□□ -1.72
PRPF39-207ENST00000554439 ZBTB4Q9P1Z0 1013 aaPredicted RBP4.33□□□□□ -1.72
PRPF39-207ENST00000554439 SUPT5HO00267 1087 aaKnown RBP4.32□□□□□ -1.72
PRPF39-207ENST00000554439 CFAP44Q96MT7 982 aa4.32□□□□□ -1.72
PRPF39-207ENST00000554439 VARS2Q5ST30 1063 aaKnown RBP4.31□□□□□ -1.72
PRPF39-207ENST00000554439 TSHZ2Q9NRE2 1034 aa4.31□□□□□ -1.72
PRPF39-207ENST00000554439 PBX2P40425 430 aa4.3□□□□□ -1.72
PRPF39-207ENST00000554439 IFNL1Q8IU54 200 aa4.29□□□□□ -1.72
PRPF39-207ENST00000554439 KLHL34Q8N239 644 aa4.29□□□□□ -1.72
PRPF39-207ENST00000554439 LAPTM4AQ15012 233 aa4.29□□□□□ -1.72
PRPF39-207ENST00000554439 DNAJC5Q9H3Z4 198 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms