RNA–Protein interactions for RNA: ENST00000553686.5

ATXN3-223, Transcript of ataxin 3, human

TSL 1 (best)

Gene ATXN3, Length 869 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATXN3-223	ENST00000553686	FAM212A	Q96EL1	285 aa		14.2	□□□□□ -0.14
ATXN3-223	ENST00000553686	ABCC9	O60706	1549 aa		14.19	□□□□□ -0.14
ATXN3-223	ENST00000553686	ZNF579	Q8NAF0	562 aa	Known RBP	14.18	□□□□□ -0.14
ATXN3-223	ENST00000553686	PHF12	Q96QT6	1004 aa		14.15	□□□□□ -0.14
ATXN3-223	ENST00000553686	CCDC61	Q9Y6R9	512 aa		14.15	□□□□□ -0.14
ATXN3-223	ENST00000553686	GSE1	Q14687	1217 aa		14.13	□□□□□ -0.15
ATXN3-223	ENST00000553686	GABBR2	O75899	941 aa		14.11	□□□□□ -0.15
ATXN3-223	ENST00000553686	CIZ1	Q9ULV3	898 aa	Predicted RBP	14.11	□□□□□ -0.15
ATXN3-223	ENST00000553686	CLCN6	P51797	869 aa		14.08	□□□□□ -0.16
ATXN3-223	ENST00000553686	KIF12	Q96FN5	646 aa		14.05	□□□□□ -0.16
ATXN3-223	ENST00000553686	PYGB	P11216	843 aa		14.02	□□□□□ -0.17
ATXN3-223	ENST00000553686	MAP3K13	O43283	966 aa		14.01	□□□□□ -0.17
ATXN3-223	ENST00000553686	GALR2	O43603	387 aa	Predicted RBP	13.98	□□□□□ -0.17
ATXN3-223	ENST00000553686	MS4A3	Q96HJ5	214 aa		13.96	□□□□□ -0.17
ATXN3-223	ENST00000553686	CHRM1	P11229	460 aa	Predicted RBP	13.95	□□□□□ -0.18
ATXN3-223	ENST00000553686	PCDHB13	Q9Y5F0	798 aa		13.94	□□□□□ -0.18
ATXN3-223	ENST00000553686	SGIP1	Q9BQI5	828 aa		13.93	□□□□□ -0.18
ATXN3-223	ENST00000553686	TRIM41	Q8WV44	630 aa		13.91	□□□□□ -0.18
ATXN3-223	ENST00000553686	IFNL1	Q8IU54	200 aa		13.88	□□□□□ -0.19
ATXN3-223	ENST00000553686	DCBLD2	Q96PD2	775 aa		13.87	□□□□□ -0.19
ATXN3-223	ENST00000553686	PKD2	Q13563	968 aa		13.86	□□□□□ -0.19
ATXN3-223	ENST00000553686	PCDHB8	Q9UN66	801 aa		13.85	□□□□□ -0.19
ATXN3-223	ENST00000553686	ECM2	O94769	699 aa	Predicted RBP	13.82	□□□□□ -0.2
ATXN3-223	ENST00000553686	TRPC6	Q9Y210	931 aa		13.82	□□□□□ -0.2
ATXN3-223	ENST00000553686	ZNF467	Q7Z7K2	595 aa	Predicted RBP	13.81	□□□□□ -0.2
ATXN3-223	ENST00000553686	POTEI	P0CG38	1075 aa		13.8	□□□□□ -0.2
ATXN3-223	ENST00000553686	TIE1	P35590	1138 aa		13.75	□□□□□ -0.21
ATXN3-223	ENST00000553686	BMP2K	Q9NSY1	1161 aa	Predicted RBP	13.74	□□□□□ -0.21
ATXN3-223	ENST00000553686	ATMIN	O43313	823 aa	Predicted RBP	13.73	□□□□□ -0.21
ATXN3-223	ENST00000553686	ASTL	Q6HA08	431 aa	Predicted RBP	13.72	□□□□□ -0.21
ATXN3-223	ENST00000553686	RIOK3	O14730	519 aa	Known RBP	13.71	□□□□□ -0.21
ATXN3-223	ENST00000553686	RNF25	Q96BH1	459 aa	Predicted RBP	13.71	□□□□□ -0.21
ATXN3-223	ENST00000553686	TMEM106C	Q9BVX2	250 aa		13.71	□□□□□ -0.21
ATXN3-223	ENST00000553686	TTLL13P	A6NNM8	815 aa		13.7	□□□□□ -0.22
ATXN3-223	ENST00000553686	PSEN1	P49768	467 aa		13.7	□□□□□ -0.22
ATXN3-223	ENST00000553686	ATN1	P54259	1190 aa	Predicted RBP	13.69	□□□□□ -0.22
ATXN3-223	ENST00000553686	PDAP1	Q13442	181 aa	Known RBP	13.69	□□□□□ -0.22
ATXN3-223	ENST00000553686	PELP1	Q8IZL8	1130 aa	Known RBP	13.68	□□□□□ -0.22
ATXN3-223	ENST00000553686	RGL2	O15211	777 aa		13.67	□□□□□ -0.22
ATXN3-223	ENST00000553686	AMER1	Q5JTC6	1135 aa	Predicted RBP	13.64	□□□□□ -0.23
ATXN3-223	ENST00000553686	VGF	O15240	615 aa	Predicted RBP	13.62	□□□□□ -0.23
ATXN3-223	ENST00000553686	TRIM35	Q9UPQ4	493 aa		13.62	□□□□□ -0.23
ATXN3-223	ENST00000553686	RTN4	Q9NQC3	1192 aa	Known RBP	13.61	□□□□□ -0.23
ATXN3-223	ENST00000553686	TAOK2	Q9UL54	1235 aa		13.61	□□□□□ -0.23
ATXN3-223	ENST00000553686	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	13.57	□□□□□ -0.24
ATXN3-223	ENST00000553686	SLC39A7	Q92504	469 aa		13.57	□□□□□ -0.24
ATXN3-223	ENST00000553686	ZFP91	Q96JP5	570 aa	Predicted RBP	13.57	□□□□□ -0.24
ATXN3-223	ENST00000553686	C7	P10643	843 aa		13.56	□□□□□ -0.24
ATXN3-223	ENST00000553686	GOLGA2	Q08379	1002 aa		13.54	□□□□□ -0.24
ATXN3-223	ENST00000553686	CABP2	Q9NPB3	220 aa		13.52	□□□□□ -0.25
ATXN3-223	ENST00000553686	METRN	Q9UJH8	293 aa		13.52	□□□□□ -0.25
ATXN3-223	ENST00000553686	IER5L	Q5T953	404 aa		13.5	□□□□□ -0.25
ATXN3-223	ENST00000553686	MKRN3	Q13064	507 aa	Known RBP	13.49	□□□□□ -0.25
ATXN3-223	ENST00000553686	STK25	O00506	426 aa		13.48	□□□□□ -0.25
ATXN3-223	ENST00000553686	BCL11B	Q9C0K0	894 aa	Predicted RBP	13.48	□□□□□ -0.25
ATXN3-223	ENST00000553686	STK24	Q9Y6E0	443 aa		13.48	□□□□□ -0.25
ATXN3-223	ENST00000553686	SEC24B	O95487	1268 aa		13.47	□□□□□ -0.25
ATXN3-223	ENST00000553686	DCAF8L2	P0C7V8	631 aa		13.46	□□□□□ -0.25
ATXN3-223	ENST00000553686	EFCAB3	Q8N7B9	438 aa		13.44	□□□□□ -0.26
ATXN3-223	ENST00000553686	COLQ	Q9Y215	455 aa	Predicted RBP	13.44	□□□□□ -0.26
ATXN3-223	ENST00000553686	POTEF	A5A3E0	1075 aa		13.42	□□□□□ -0.26
ATXN3-223	ENST00000553686	CHGA	P10645	457 aa	Known RBP	13.42	□□□□□ -0.26
ATXN3-223	ENST00000553686	IRX5	P78411	483 aa	Predicted RBP	13.41	□□□□□ -0.26
ATXN3-223	ENST00000553686	OCEL1	Q9H607	264 aa		13.41	□□□□□ -0.26
ATXN3-223	ENST00000553686	PLCG2	P16885	1265 aa		13.4	□□□□□ -0.26
ATXN3-223	ENST00000553686	LHX8	Q68G74	356 aa		13.4	□□□□□ -0.26
ATXN3-223	ENST00000553686	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.39	□□□□□ -0.27	3e-6	■■□□□ 13.5
ATXN3-223	ENST00000553686	DNAJC5	Q9H3Z4	198 aa		13.38	□□□□□ -0.27
ATXN3-223	ENST00000553686	POTEB2	H3BUK9	544 aa		13.37	□□□□□ -0.27
ATXN3-223	ENST00000553686	CCDC180	Q9P1Z9	1646 aa		13.37	□□□□□ -0.27
ATXN3-223	ENST00000553686	HS6ST3	Q8IZP7	471 aa		13.36	□□□□□ -0.27
ATXN3-223	ENST00000553686	SOX12	O15370	315 aa		13.35	□□□□□ -0.27
ATXN3-223	ENST00000553686	ILDR1	Q86SU0	546 aa	Predicted RBP	13.3	□□□□□ -0.28
ATXN3-223	ENST00000553686	PDCD7	Q8N8D1	485 aa	Known RBP	13.3	□□□□□ -0.28
ATXN3-223	ENST00000553686	PHF8	Q9UPP1	1060 aa		13.3	□□□□□ -0.28
ATXN3-223	ENST00000553686	POTEJ	P0CG39	1038 aa		13.28	□□□□□ -0.28
ATXN3-223	ENST00000553686	NLRP6	P59044	892 aa		13.27	□□□□□ -0.29
ATXN3-223	ENST00000553686	DPY19L2	Q6NUT2	758 aa		13.27	□□□□□ -0.29
ATXN3-223	ENST00000553686	MFRP	Q9BY79	579 aa		13.25	□□□□□ -0.29
ATXN3-223	ENST00000553686	FBXO22	Q8NEZ5	403 aa		13.22	□□□□□ -0.29
ATXN3-223	ENST00000553686	L3MBTL3	Q96JM7	780 aa	Predicted RBP	13.22	□□□□□ -0.29
ATXN3-223	ENST00000553686	MAMSTR	Q6ZN01	415 aa		13.21	□□□□□ -0.29
ATXN3-223	ENST00000553686	MS4A4A	Q96JQ5	239 aa		13.21	□□□□□ -0.29
ATXN3-223	ENST00000553686	NKX1-1	Q15270	411 aa	Predicted RBP	13.2	□□□□□ -0.3
ATXN3-223	ENST00000553686	OTUD5	Q96G74	571 aa		13.19	□□□□□ -0.3
ATXN3-223	ENST00000553686	RB1CC1	Q8TDY2	1594 aa		13.18	□□□□□ -0.3
ATXN3-223	ENST00000553686		G3V3G9	751 aa		13.16	□□□□□ -0.3
ATXN3-223	ENST00000553686	SCUBE2	Q9NQ36	999 aa		13.16	□□□□□ -0.3
ATXN3-223	ENST00000553686	BOLA1	Q9Y3E2	137 aa		13.15	□□□□□ -0.3
ATXN3-223	ENST00000553686	BBX	Q8WY36	941 aa	Predicted RBP	13.13	□□□□□ -0.31
ATXN3-223	ENST00000553686	PPP1R37	O75864	691 aa		13.09	□□□□□ -0.31
ATXN3-223	ENST00000553686	RYDEN	Q9NUL5	291 aa	Known RBP	13.09	□□□□□ -0.31
ATXN3-223	ENST00000553686	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	13.09	□□□□□ -0.31
ATXN3-223	ENST00000553686	C3orf67	Q6ZVT6	689 aa		13.08	□□□□□ -0.32
ATXN3-223	ENST00000553686	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	13.08	□□□□□ -0.32
ATXN3-223	ENST00000553686	GTPBP6	O43824	516 aa	Predicted RBP	13.07	□□□□□ -0.32
ATXN3-223	ENST00000553686	MICALL2	Q8IY33	904 aa		13.07	□□□□□ -0.32
ATXN3-223	ENST00000553686	SLAIN1	Q8ND83	568 aa		13.04	□□□□□ -0.32
ATXN3-223	ENST00000553686	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	13.04	□□□□□ -0.32
ATXN3-223	ENST00000553686	SPRYD3	Q8NCJ5	442 aa		12.98	□□□□□ -0.33

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