RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 POTEGQ6S5H5 508 aa10.63□□□□□ -0.71
VIPAS39-204ENST00000553576 MNX1P50219 401 aaPredicted RBP10.62□□□□□ -0.71
VIPAS39-204ENST00000553576 CSRNP3Q8WYN3 585 aa10.62□□□□□ -0.71
VIPAS39-204ENST00000553576 SPDYE4A6NLX3 237 aa10.61□□□□□ -0.71
VIPAS39-204ENST00000553576 NPM1P06748 294 aaKnown RBP eCLIP10.61□□□□□ -0.71
VIPAS39-204ENST00000553576 ABCC9O60706 1549 aa10.59□□□□□ -0.71
VIPAS39-204ENST00000553576 ASTLQ6HA08 431 aaPredicted RBP10.57□□□□□ -0.72
VIPAS39-204ENST00000553576 METRNQ9UJH8 293 aa10.57□□□□□ -0.72
VIPAS39-204ENST00000553576 MS4A3Q96HJ5 214 aa10.55□□□□□ -0.72
VIPAS39-204ENST00000553576 ATMINO43313 823 aaPredicted RBP10.54□□□□□ -0.72
VIPAS39-204ENST00000553576 POTEJP0CG39 1038 aa10.54□□□□□ -0.72
VIPAS39-204ENST00000553576 C7P10643 843 aa10.53□□□□□ -0.72
VIPAS39-204ENST00000553576 SLC39A7Q92504 469 aa10.53□□□□□ -0.72
VIPAS39-204ENST00000553576 PCDH10Q9P2E7 1040 aa10.51□□□□□ -0.73
VIPAS39-204ENST00000553576 RB1CC1Q8TDY2 1594 aa10.5□□□□□ -0.73
VIPAS39-204ENST00000553576 SCRIBQ14160 1630 aa10.49□□□□□ -0.73
VIPAS39-204ENST00000553576 SUPT5HO00267 1087 aaKnown RBP10.48□□□□□ -0.73
VIPAS39-204ENST00000553576 MAMSTRQ6ZN01 415 aa10.47□□□□□ -0.73
VIPAS39-204ENST00000553576 LCE2DQ5TA82 110 aaPredicted RBP10.45□□□□□ -0.74
VIPAS39-204ENST00000553576 ATN1P54259 1190 aaPredicted RBP10.42□□□□□ -0.74
VIPAS39-204ENST00000553576 TSPYL2Q9H2G4 693 aaPredicted RBP10.41□□□□□ -0.74
VIPAS39-204ENST00000553576 SCUBE2Q9NQ36 999 aa10.4□□□□□ -0.74
VIPAS39-204ENST00000553576 CCDC61Q9Y6R9 512 aa10.4□□□□□ -0.74
VIPAS39-204ENST00000553576 FAM163AQ96GL9 167 aaPredicted RBP10.39□□□□□ -0.75
VIPAS39-204ENST00000553576 POTEFA5A3E0 1075 aa10.36□□□□□ -0.75
VIPAS39-204ENST00000553576 KIF12Q96FN5 646 aa10.36□□□□□ -0.75
VIPAS39-204ENST00000553576 UNC13AQ9UPW8 1703 aa10.36□□□□□ -0.75
VIPAS39-204ENST00000553576 BMP2KQ9NSY1 1161 aaPredicted RBP10.35□□□□□ -0.75
VIPAS39-204ENST00000553576 TRPC6Q9Y210 931 aa10.33□□□□□ -0.76
VIPAS39-204ENST00000553576 PROM2Q8N271 834 aa10.32□□□□□ -0.76
VIPAS39-204ENST00000553576 RSF1Q96T23 1441 aaPredicted RBP10.32□□□□□ -0.76
VIPAS39-204ENST00000553576 TIE1P35590 1138 aa10.28□□□□□ -0.76
VIPAS39-204ENST00000553576 MAP3K13O43283 966 aa10.27□□□□□ -0.77
VIPAS39-204ENST00000553576 EHMT2Q96KQ7 1210 aa10.26□□□□□ -0.77
VIPAS39-204ENST00000553576 COLQQ9Y215 455 aaPredicted RBP10.25□□□□□ -0.77
VIPAS39-204ENST00000553576 TTLL13PA6NNM8 815 aa10.23□□□□□ -0.77
VIPAS39-204ENST00000553576 RASEFQ8IZ41 740 aa10.23□□□□□ -0.77
VIPAS39-204ENST00000553576 CECR2Q9BXF3 1484 aa10.23□□□□□ -0.77
VIPAS39-204ENST00000553576 SEC24BO95487 1268 aa10.21□□□□□ -0.77
VIPAS39-204ENST00000553576 MROH2BQ7Z745 1585 aa10.2□□□□□ -0.78
VIPAS39-204ENST00000553576 BAZ1AQ9NRL2 1556 aaPredicted RBP10.2□□□□□ -0.78
VIPAS39-204ENST00000553576 BICRAQ9NZM4 1560 aa10.19□□□□□ -0.78
VIPAS39-204ENST00000553576 CDAN1Q8IWY9 1227 aa10.19□□□□□ -0.78
VIPAS39-204ENST00000553576 PLEKHG5O94827 1062 aa10.18□□□□□ -0.78
VIPAS39-204ENST00000553576 IER5LQ5T953 404 aa10.16□□□□□ -0.78
VIPAS39-204ENST00000553576 MIER1Q8N108 512 aa10.16□□□□□ -0.78
VIPAS39-204ENST00000553576 TRIM35Q9UPQ4 493 aa10.16□□□□□ -0.78
VIPAS39-204ENST00000553576 WIZO95785 1651 aa10.14□□□□□ -0.79
VIPAS39-204ENST00000553576 SMARCA4P51532 1647 aa10.13□□□□□ -0.79
VIPAS39-204ENST00000553576 SGIP1Q9BQI5 828 aa10.12□□□□□ -0.79
VIPAS39-204ENST00000553576 PCDHB13Q9Y5F0 798 aa10.11□□□□□ -0.79
VIPAS39-204ENST00000553576 ST18O60284 1047 aa10.1□□□□□ -0.79
VIPAS39-204ENST00000553576 SLAIN1Q8ND83 568 aa10.1□□□□□ -0.79
VIPAS39-204ENST00000553576 PEG3Q9GZU2 1588 aa10.05□□□□□ -0.8
VIPAS39-204ENST00000553576 IFNL1Q8IU54 200 aa10.05□□□□□ -0.8
VIPAS39-204ENST00000553576 TOP2AP11388 1531 aaKnown RBP10.04□□□□□ -0.8
VIPAS39-204ENST00000553576 NUBP1P53384 320 aa10.03□□□□□ -0.8
VIPAS39-204ENST00000553576 PLCD3Q8N3E9 789 aa10.03□□□□□ -0.8
VIPAS39-204ENST00000553576 TMEM106CQ9BVX2 250 aa10.03□□□□□ -0.8
VIPAS39-204ENST00000553576 PLCG2P16885 1265 aa10.02□□□□□ -0.81
VIPAS39-204ENST00000553576 IRX5P78411 483 aaPredicted RBP10□□□□□ -0.81
VIPAS39-204ENST00000553576 ZBTB47Q9UFB7 747 aaPredicted RBP9.99□□□□□ -0.81
VIPAS39-204ENST00000553576 MMRN1Q13201 1228 aa9.97□□□□□ -0.81
VIPAS39-204ENST00000553576 SPNS2Q8IVW8 549 aa9.96□□□□□ -0.82
VIPAS39-204ENST00000553576 FAM212AQ96EL1 285 aa9.96□□□□□ -0.82
VIPAS39-204ENST00000553576 TMEM121BQ9BXQ6 578 aaPredicted RBP9.96□□□□□ -0.82
VIPAS39-204ENST00000553576 SMARCA2P51531 1590 aa9.96□□□□□ -0.82
VIPAS39-204ENST00000553576 EIF4G1Q04637 1599 aaKnown RBP9.95□□□□□ -0.82
VIPAS39-204ENST00000553576 CCDC88BA6NC98 1476 aa9.94□□□□□ -0.82
VIPAS39-204ENST00000553576 OCEL1Q9H607 264 aa9.92□□□□□ -0.82
VIPAS39-204ENST00000553576 ATAD2BQ9ULI0 1458 aa9.91□□□□□ -0.82
VIPAS39-204ENST00000553576 SNPHO15079 494 aa9.9□□□□□ -0.82
VIPAS39-204ENST00000553576 TRIM41Q8WV44 630 aa9.9□□□□□ -0.82
VIPAS39-204ENST00000553576 MARVELD3Q96A59 401 aa9.89□□□□□ -0.83
VIPAS39-204ENST00000553576 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.89□□□□□ -0.83
VIPAS39-204ENST00000553576 NCAPD3P42695 1498 aa9.84□□□□□ -0.83
VIPAS39-204ENST00000553576 BAZ1BQ9UIG0 1483 aaKnown RBP9.84□□□□□ -0.83
VIPAS39-204ENST00000553576 PYGBP11216 843 aa9.83□□□□□ -0.84
VIPAS39-204ENST00000553576 HMGXB3Q12766 1538 aa9.82□□□□□ -0.84
VIPAS39-204ENST00000553576 PCDHB8Q9UN66 801 aa9.82□□□□□ -0.84
VIPAS39-204ENST00000553576 DCAF8Q5TAQ9 597 aa9.8□□□□□ -0.84
VIPAS39-204ENST00000553576 LOC105371045A0A1W2PR82 267 aa9.79□□□□□ -0.84
VIPAS39-204ENST00000553576 PDCD7Q8N8D1 485 aaKnown RBP9.79□□□□□ -0.84
VIPAS39-204ENST00000553576 EMP3P54852 163 aa9.78□□□□□ -0.84
VIPAS39-204ENST00000553576 C3orf67Q6ZVT6 689 aa9.77□□□□□ -0.85
VIPAS39-204ENST00000553576 KRTAP3-3Q9BYR6 98 aa9.75□□□□□ -0.85
VIPAS39-204ENST00000553576 KRTAP3-2Q9BYR7 98 aa9.75□□□□□ -0.85
VIPAS39-204ENST00000553576 POTEB3A0JP26 581 aa9.74□□□□□ -0.85
VIPAS39-204ENST00000553576 POTEBQ6S5H4 581 aa9.74□□□□□ -0.85
VIPAS39-204ENST00000553576 ABCC8Q09428 1581 aa9.74□□□□□ -0.85
VIPAS39-204ENST00000553576 HS3ST6Q96QI5 342 aa9.73□□□□□ -0.85
VIPAS39-204ENST00000553576 L3MBTL3Q96JM7 780 aaPredicted RBP9.72□□□□□ -0.85
VIPAS39-204ENST00000553576 FAM205CA6NFA0 338 aa9.7□□□□□ -0.86
VIPAS39-204ENST00000553576 MKRN3Q13064 507 aaKnown RBP9.7□□□□□ -0.86
VIPAS39-204ENST00000553576 EEA1Q15075 1411 aa9.7□□□□□ -0.86
VIPAS39-204ENST00000553576 GOLGA2Q08379 1002 aa9.69□□□□□ -0.86
VIPAS39-204ENST00000553576 WRNQ14191 1432 aaPredicted RBP eCLIP9.69□□□□□ -0.86
VIPAS39-204ENST00000553576 PRDM2Q13029 1718 aa9.68□□□□□ -0.86
VIPAS39-204ENST00000553576 ZNF467Q7Z7K2 595 aaPredicted RBP9.68□□□□□ -0.86
VIPAS39-204ENST00000553576 FKBP8Q14318 412 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 126.8 ms