RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-208ENST00000553289 CEP164Q9UPV0 1460 aa15.31■□□□□ 0.04
SYNE2-208ENST00000553289 NACADO15069 1562 aa15.31■□□□□ 0.04
SYNE2-208ENST00000553289 MYH16Q9H6N6 1097 aa15.29■□□□□ 0.04
SYNE2-208ENST00000553289 KIF27Q86VH2 1401 aa15.29■□□□□ 0.04
SYNE2-208ENST00000553289 PLEKHD1A6NEE1 506 aa15.28■□□□□ 0.04
SYNE2-208ENST00000553289 CDCA8Q53HL2 280 aa15.27■□□□□ 0.03
SYNE2-208ENST00000553289 RRP7BPQ9NSQ0 103 aa15.27■□□□□ 0.03
SYNE2-208ENST00000553289 DDRGK1Q96HY6 314 aa15.26■□□□□ 0.03
SYNE2-208ENST00000553289 BAZ1BQ9UIG0 1483 aaKnown RBP15.25■□□□□ 0.03
SYNE2-208ENST00000553289 EIF5BO60841 1220 aaKnown RBP15.24■□□□□ 0.03
SYNE2-208ENST00000553289 GLIPR1L2Q4G1C9 344 aa15.24■□□□□ 0.03
SYNE2-208ENST00000553289 MYO15BQ96JP2 1530 aa15.23■□□□□ 0.03
SYNE2-208ENST00000553289 SCAF1Q9H7N4 1312 aaKnown RBP15.23■□□□□ 0.03
SYNE2-208ENST00000553289 BECN1Q14457 450 aa15.22■□□□□ 0.03
SYNE2-208ENST00000553289 ANP32EQ9BTT0 268 aa15.22■□□□□ 0.03
SYNE2-208ENST00000553289 NBR1Q14596 966 aa15.2■□□□□ 0.02
SYNE2-208ENST00000553289 CFAP53Q96M91 514 aa15.2■□□□□ 0.02
SYNE2-208ENST00000553289 HIRIP3Q9BW71 556 aaPredicted RBP15.18■□□□□ 0.02
SYNE2-208ENST00000553289 CFDP1Q9UEE9 299 aaPredicted RBP15.17■□□□□ 0.02
SYNE2-208ENST00000553289 IRX6P78412 446 aaPredicted RBP15.16■□□□□ 0.02
SYNE2-208ENST00000553289 BAZ1AQ9NRL2 1556 aaPredicted RBP15.15■□□□□ 0.02
SYNE2-208ENST00000553289 KNSTRNQ9Y448 316 aa15.15■□□□□ 0.02
SYNE2-208ENST00000553289 PPP1R15AO75807 674 aaPredicted RBP15.13■□□□□ 0.01
SYNE2-208ENST00000553289 FHAD1B1AJZ9 1412 aa15.13■□□□□ 0.01
SYNE2-208ENST00000553289 PLPPR3Q6T4P5 718 aa15.13■□□□□ 0.01
SYNE2-208ENST00000553289 TIMELESSQ9UNS1 1208 aa15.12■□□□□ 0.01
SYNE2-208ENST00000553289 CARD11Q9BXL7 1154 aa15.12■□□□□ 0.01
SYNE2-208ENST00000553289 GOLGA6L22H0YM25 854 aa15.11■□□□□ 0.01
SYNE2-208ENST00000553289 KCNH8Q96L42 1107 aa15.1■□□□□ 0.01
SYNE2-208ENST00000553289 NCLP19338 710 aaKnown RBP15.1■□□□□ 0.01
SYNE2-208ENST00000553289 RGL3Q3MIN7 710 aa15.09■□□□□ 0.01
SYNE2-208ENST00000553289 CCNB3Q8WWL7 1395 aa15.06■□□□□ 0
SYNE2-208ENST00000553289 PPM1GO15355 546 aaPredicted RBP15.06■□□□□ 0
SYNE2-208ENST00000553289 PPP4R2Q9NY27 417 aa15.06■□□□□ 0
SYNE2-208ENST00000553289 CHMP4BQ9H444 224 aaKnown RBP15.05■□□□□ -0
SYNE2-208ENST00000553289 CASC1Q6TDU7 716 aa15.05■□□□□ -0
SYNE2-208ENST00000553289 NUDCQ9Y266 331 aa15.04■□□□□ -0
SYNE2-208ENST00000553289 SUPT16HQ9Y5B9 1047 aaKnown RBP15.03■□□□□ -0
SYNE2-208ENST00000553289 TRIM44Q96DX7 344 aaPredicted RBP15.03■□□□□ -0
SYNE2-208ENST00000553289 FTSJ3Q8IY81 847 aaKnown RBP15.02■□□□□ -0
SYNE2-208ENST00000553289 MS4A1P11836 297 aa15.02■□□□□ -0
SYNE2-208ENST00000553289 ARXQ96QS3 562 aa15.02■□□□□ -0
SYNE2-208ENST00000553289 MAPK8IP3Q9UPT6 1336 aa15.02□□□□□ -0.01
SYNE2-208ENST00000553289 C14orf37Q86TY3 774 aa14.98□□□□□ -0.01
SYNE2-208ENST00000553289 PNNQ9H307 717 aaKnown RBP14.98□□□□□ -0.01
SYNE2-208ENST00000553289 CARMIL1Q5VZK9 1371 aa14.97□□□□□ -0.01
SYNE2-208ENST00000553289 SIN3AQ96ST3 1273 aa14.97□□□□□ -0.01
SYNE2-208ENST00000553289 CCER2I3L3R5 266 aa14.97□□□□□ -0.01
SYNE2-208ENST00000553289 CDK11BP21127 795 aaKnown RBP14.96□□□□□ -0.01
SYNE2-208ENST00000553289 TMF1P82094 1093 aa14.95□□□□□ -0.02
SYNE2-208ENST00000553289 VPS8Q8N3P4 1428 aa14.94□□□□□ -0.02
SYNE2-208ENST00000553289 ZBTB7CA1YPR0 619 aa14.94□□□□□ -0.02
SYNE2-208ENST00000553289 KANK1Q14678 1352 aa14.93□□□□□ -0.02
SYNE2-208ENST00000553289 SETD5Q9C0A6 1442 aa14.93□□□□□ -0.02
SYNE2-208ENST00000553289 CUX2O14529 1486 aa14.93□□□□□ -0.02
SYNE2-208ENST00000553289 POGKQ9P215 609 aa14.93□□□□□ -0.02
SYNE2-208ENST00000553289 ZRSR1Q15695 479 aaKnown RBP14.91□□□□□ -0.02
SYNE2-208ENST00000553289 ARHGAP35Q9NRY4 1499 aa14.91□□□□□ -0.02
SYNE2-208ENST00000553289 ERCC6Q03468 1493 aa14.9□□□□□ -0.02
SYNE2-208ENST00000553289 ERICH6BQ5W0A0 696 aa14.9□□□□□ -0.02
SYNE2-208ENST00000553289 CECR2Q9BXF3 1484 aa14.89□□□□□ -0.03
SYNE2-208ENST00000553289 SOGA1O94964 1423 aa14.88□□□□□ -0.03
SYNE2-208ENST00000553289 NEUROD2Q15784 382 aa14.88□□□□□ -0.03
SYNE2-208ENST00000553289 NOP58Q9Y2X3 529 aaKnown RBP14.88□□□□□ -0.03
SYNE2-208ENST00000553289 ARID4BQ4LE39 1312 aaPredicted RBP14.88□□□□□ -0.03
SYNE2-208ENST00000553289 PTMAP06454 111 aaKnown RBP14.87□□□□□ -0.03
SYNE2-208ENST00000553289 A0A0G2JS52 829 aa14.87□□□□□ -0.03
SYNE2-208ENST00000553289 DCAF11Q8TEB1 546 aa14.86□□□□□ -0.03
SYNE2-208ENST00000553289 EIF4G1Q04637 1599 aaKnown RBP14.86□□□□□ -0.03
SYNE2-208ENST00000553289 CC2D1BQ5T0F9 858 aaKnown RBP14.86□□□□□ -0.03
SYNE2-208ENST00000553289 FRAT1Q92837 279 aaPredicted RBP14.86□□□□□ -0.03
SYNE2-208ENST00000553289 CFAP44Q96MT7 982 aa14.86□□□□□ -0.03
SYNE2-208ENST00000553289 LAS1LQ9Y4W2 734 aaKnown RBP14.85□□□□□ -0.03
SYNE2-208ENST00000553289 RGS3P49796 1198 aa14.85□□□□□ -0.03
SYNE2-208ENST00000553289 HDGFP51858 240 aaKnown RBP14.85□□□□□ -0.03
SYNE2-208ENST00000553289 HAP1P54257 671 aaPredicted RBP14.85□□□□□ -0.03
SYNE2-208ENST00000553289 SENP3Q9H4L4 574 aaPredicted RBP14.83□□□□□ -0.03
SYNE2-208ENST00000553289 FMN1Q68DA7 1419 aa14.82□□□□□ -0.04
SYNE2-208ENST00000553289 SMARCA2P51531 1590 aa14.81□□□□□ -0.04
SYNE2-208ENST00000553289 U2SURPO15042 1029 aaKnown RBP14.81□□□□□ -0.04
SYNE2-208ENST00000553289 HSP90AB1P08238 724 aaKnown RBP14.8□□□□□ -0.04
SYNE2-208ENST00000553289 KTN1Q86UP2 1357 aaKnown RBP14.8□□□□□ -0.04
SYNE2-208ENST00000553289 CARMIL2Q6F5E8 1435 aa14.8□□□□□ -0.04
SYNE2-208ENST00000553289 HSPA5P11021 654 aaKnown RBP14.8□□□□□ -0.04
SYNE2-208ENST00000553289 CCDC88BA6NC98 1476 aa14.8□□□□□ -0.04
SYNE2-208ENST00000553289 TNNT2P45379 298 aaPredicted RBP14.79□□□□□ -0.04
SYNE2-208ENST00000553289 SENP3-EIF4A1A0A087X0R7 540 aa14.79□□□□□ -0.04
SYNE2-208ENST00000553289 B4GALNT3Q6L9W6 998 aa14.78□□□□□ -0.04
SYNE2-208ENST00000553289 PLEKHG5O94827 1062 aa14.78□□□□□ -0.04
SYNE2-208ENST00000553289 MORC1Q86VD1 984 aa14.78□□□□□ -0.04
SYNE2-208ENST00000553289 DNTTIP2Q5QJE6 756 aaKnown RBP14.77□□□□□ -0.04
SYNE2-208ENST00000553289 RALBP1Q15311 655 aa14.77□□□□□ -0.05
SYNE2-208ENST00000553289 HSCBQ8IWL3 235 aa14.77□□□□□ -0.05
SYNE2-208ENST00000553289 GOLGA6L6A8MZA4 724 aa14.76□□□□□ -0.05
SYNE2-208ENST00000553289 OS9Q13438 667 aaPredicted RBP14.76□□□□□ -0.05
SYNE2-208ENST00000553289 PKD2Q13563 968 aa14.75□□□□□ -0.05
SYNE2-208ENST00000553289 MROH2BQ7Z745 1585 aa14.75□□□□□ -0.05
SYNE2-208ENST00000553289 MCCP23508 829 aa14.74□□□□□ -0.05
SYNE2-208ENST00000553289 NRDCO43847 1150 aa14.73□□□□□ -0.05
SYNE2-208ENST00000553289 RAB3GAP2Q9H2M9 1393 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms