RNA–Protein interactions for RNA: ENST00000543473.1

SUDS3-204, Transcript of SDS3 homolog, SIN3A corepressor complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SUDS3, Length 4,897 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SUDS3-204ENST00000543473 BCL11AQ9H165 835 aa26.03■■□□□ 1.76
SUDS3-204ENST00000543473 SMARCA2P51531 1590 aa25.98■■□□□ 1.75
SUDS3-204ENST00000543473 GLIPR1L2Q4G1C9 344 aa25.98■■□□□ 1.75
SUDS3-204ENST00000543473 SOGA1O94964 1423 aa25.98■■□□□ 1.75
SUDS3-204ENST00000543473 ERCC6Q03468 1493 aa25.96■■□□□ 1.75
SUDS3-204ENST00000543473 UPF2Q9HAU5 1272 aaKnown RBP25.94■■□□□ 1.74
SUDS3-204ENST00000543473 EIF4G2P78344 907 aaKnown RBP eCLIP25.94■■□□□ 1.74
SUDS3-204ENST00000543473 WIZO95785 1651 aa25.93■■□□□ 1.74
SUDS3-204ENST00000543473 TSPY4P0CV99 314 aa25.9■■□□□ 1.74
SUDS3-204ENST00000543473 TSPY10P0CW01 314 aa25.9■■□□□ 1.74
SUDS3-204ENST00000543473 ABCC8Q09428 1581 aa25.89■■□□□ 1.73
SUDS3-204ENST00000543473 ANP32BQ92688 251 aaKnown RBP25.88■■□□□ 1.73
SUDS3-204ENST00000543473 CUX2O14529 1486 aa25.87■■□□□ 1.73
SUDS3-204ENST00000543473 RBM19Q9Y4C8 960 aaKnown RBP25.86■■□□□ 1.73
SUDS3-204ENST00000543473 PPP4R2Q9NY27 417 aa25.85■■□□□ 1.73
SUDS3-204ENST00000543473 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.84■■□□□ 1.732e-7■■□□□ 13.4
SUDS3-204ENST00000543473 HSP90AA1P07900 732 aaKnown RBP25.82■■□□□ 1.72
SUDS3-204ENST00000543473 TOP2AP11388 1531 aaKnown RBP25.82■■□□□ 1.72
SUDS3-204ENST00000543473 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.81■■□□□ 1.72
SUDS3-204ENST00000543473 CARMIL1Q5VZK9 1371 aa25.81■■□□□ 1.72
SUDS3-204ENST00000543473 PLEKHD1A6NEE1 506 aa25.81■■□□□ 1.72
SUDS3-204ENST00000543473 ARXQ96QS3 562 aa25.8■■□□□ 1.72
SUDS3-204ENST00000543473 KCNH8Q96L42 1107 aa25.8■■□□□ 1.72
SUDS3-204ENST00000543473 CHGAP10645 457 aaKnown RBP25.79■■□□□ 1.72
SUDS3-204ENST00000543473 TSHZ2Q9NRE2 1034 aa25.78■■□□□ 1.72
SUDS3-204ENST00000543473 RRP7BPQ9NSQ0 103 aa25.78■■□□□ 1.72
SUDS3-204ENST00000543473 ESF1Q9H501 851 aaKnown RBP25.77■■□□□ 1.72
SUDS3-204ENST00000543473 NOP58Q9Y2X3 529 aaKnown RBP25.77■■□□□ 1.72
SUDS3-204ENST00000543473 DDRGK1Q96HY6 314 aa25.76■■□□□ 1.71
SUDS3-204ENST00000543473 SIN3AQ96ST3 1273 aa25.76■■□□□ 1.71
SUDS3-204ENST00000543473 NEFMP07197 916 aa25.75■■□□□ 1.71
SUDS3-204ENST00000543473 ATAD2BQ9ULI0 1458 aa25.75■■□□□ 1.71
SUDS3-204ENST00000543473 SMARCA4P51532 1647 aa25.68■■□□□ 1.7
SUDS3-204ENST00000543473 PPM1GO15355 546 aaPredicted RBP25.68■■□□□ 1.7
SUDS3-204ENST00000543473 B4GALNT3Q6L9W6 998 aa25.68■■□□□ 1.7
SUDS3-204ENST00000543473 PDS5BQ9NTI5 1447 aa25.68■■□□□ 1.7
SUDS3-204ENST00000543473 WDR43Q15061 677 aaKnown RBP eCLIP25.66■■□□□ 1.7
SUDS3-204ENST00000543473 RTN4Q9NQC3 1192 aaKnown RBP25.66■■□□□ 1.7
SUDS3-204ENST00000543473 SENP3-EIF4A1A0A087X0R7 540 aa25.66■■□□□ 1.7
SUDS3-204ENST00000543473 DEKP35659 375 aaKnown RBP25.66■■□□□ 1.7
SUDS3-204ENST00000543473 STAG3Q9UJ98 1225 aa25.65■■□□□ 1.7
SUDS3-204ENST00000543473 KDM2AQ9Y2K7 1162 aa25.64■■□□□ 1.7
SUDS3-204ENST00000543473 CADPSQ9ULU8 1353 aa25.64■■□□□ 1.7
SUDS3-204ENST00000543473 CCER2I3L3R5 266 aa25.63■■□□□ 1.69
SUDS3-204ENST00000543473 CFDP1Q9UEE9 299 aaPredicted RBP25.63■■□□□ 1.69
SUDS3-204ENST00000543473 LAS1LQ9Y4W2 734 aaKnown RBP25.62■■□□□ 1.69
SUDS3-204ENST00000543473 TDRD9Q8NDG6 1382 aaKnown RBP25.61■■□□□ 1.69
SUDS3-204ENST00000543473 PLPPR3Q6T4P5 718 aa25.59■■□□□ 1.69
SUDS3-204ENST00000543473 EIF4G1Q04637 1599 aaKnown RBP25.56■■□□□ 1.68
SUDS3-204ENST00000543473 FHAD1B1AJZ9 1412 aa25.55■■□□□ 1.68
SUDS3-204ENST00000543473 BECN1Q14457 450 aa25.55■■□□□ 1.68
SUDS3-204ENST00000543473 CCNB3Q8WWL7 1395 aa25.54■■□□□ 1.68
SUDS3-204ENST00000543473 TIMELESSQ9UNS1 1208 aa25.52■■□□□ 1.68
SUDS3-204ENST00000543473 ERICH6BQ5W0A0 696 aa25.5■■□□□ 1.67
SUDS3-204ENST00000543473 VPS8Q8N3P4 1428 aa25.45■■□□□ 1.66
SUDS3-204ENST00000543473 SLC24A1O60721 1099 aa25.45■■□□□ 1.66
SUDS3-204ENST00000543473 TRIM44Q96DX7 344 aaPredicted RBP25.42■■□□□ 1.66
SUDS3-204ENST00000543473 KANK4Q5T7N3 995 aaPredicted RBP25.37■■□□□ 1.65
SUDS3-204ENST00000543473 RGL3Q3MIN7 710 aa25.35■■□□□ 1.65
SUDS3-204ENST00000543473 RGS3P49796 1198 aa25.31■■□□□ 1.64
SUDS3-204ENST00000543473 CARD11Q9BXL7 1154 aa25.3■■□□□ 1.64
SUDS3-204ENST00000543473 SETD5Q9C0A6 1442 aa25.29■■□□□ 1.64
SUDS3-204ENST00000543473 FANCD2Q9BXW9 1451 aa25.28■■□□□ 1.64
SUDS3-204ENST00000543473 RUSC2Q8N2Y8 1516 aa25.28■■□□□ 1.64
SUDS3-204ENST00000543473 RAPGEF2Q9Y4G8 1499 aa25.26■■□□□ 1.63
SUDS3-204ENST00000543473 SENP3Q9H4L4 574 aaPredicted RBP25.26■■□□□ 1.63
SUDS3-204ENST00000543473 NAP1L5Q96NT1 182 aaPredicted RBP25.25■■□□□ 1.63
SUDS3-204ENST00000543473 HSPA5P11021 654 aaKnown RBP25.23■■□□□ 1.63
SUDS3-204ENST00000543473 CARMIL2Q6F5E8 1435 aa25.22■■□□□ 1.63
SUDS3-204ENST00000543473 GOLGA6L22H0YM25 854 aa25.22■■□□□ 1.63
SUDS3-204ENST00000543473 RAB3GAP2Q9H2M9 1393 aa25.21■■□□□ 1.63
SUDS3-204ENST00000543473 FMN1Q68DA7 1419 aa25.2■■□□□ 1.62
SUDS3-204ENST00000543473 KNSTRNQ9Y448 316 aa25.17■■□□□ 1.62
SUDS3-204ENST00000543473 NCAPD3P42695 1498 aa25.17■■□□□ 1.62
SUDS3-204ENST00000543473 PPP1R15AO75807 674 aaPredicted RBP25.17■■□□□ 1.62
SUDS3-204ENST00000543473 ARHGAP35Q9NRY4 1499 aa25.16■■□□□ 1.62
SUDS3-204ENST00000543473 FHOD3Q2V2M9 1422 aa25.14■■□□□ 1.62
SUDS3-204ENST00000543473 MYH16Q9H6N6 1097 aa25.14■■□□□ 1.62
SUDS3-204ENST00000543473 IPO9Q96P70 1041 aaKnown RBP25.14■■□□□ 1.61
SUDS3-204ENST00000543473 NCLP19338 710 aaKnown RBP25.09■■□□□ 1.61
SUDS3-204ENST00000543473 ARID4BQ4LE39 1312 aaPredicted RBP25.09■■□□□ 1.61
SUDS3-204ENST00000543473 DHX57Q6P158 1386 aaKnown RBP25.08■■□□□ 1.61
SUDS3-204ENST00000543473 TCERG1O14776 1098 aaKnown RBP25.08■■□□□ 1.61
SUDS3-204ENST00000543473 CDCA8Q53HL2 280 aa25.06■■□□□ 1.6
SUDS3-204ENST00000543473 CC2D1BQ5T0F9 858 aaKnown RBP25.05■■□□□ 1.6
SUDS3-204ENST00000543473 JPH4Q96JJ6 628 aa25.05■■□□□ 1.6
SUDS3-204ENST00000543473 FRAT1Q92837 279 aaPredicted RBP25.03■■□□□ 1.6
SUDS3-204ENST00000543473 L1TD1Q5T7N2 865 aaKnown RBP25.03■■□□□ 1.6
SUDS3-204ENST00000543473 NEUROD2Q15784 382 aa25.02■■□□□ 1.6
SUDS3-204ENST00000543473 FTSJ3Q8IY81 847 aaKnown RBP25.02■■□□□ 1.6
SUDS3-204ENST00000543473 ZBTB4Q9P1Z0 1013 aaPredicted RBP25.02■■□□□ 1.6
SUDS3-204ENST00000543473 FGD5Q6ZNL6 1462 aa25.02■■□□□ 1.6
SUDS3-204ENST00000543473 FANCIQ9NVI1 1328 aa25.01■■□□□ 1.59
SUDS3-204ENST00000543473 RCAN3Q9UKA8 241 aa25■■□□□ 1.59
SUDS3-204ENST00000543473 PTMAP06454 111 aaKnown RBP24.99■■□□□ 1.59
SUDS3-204ENST00000543473 NUDCQ9Y266 331 aa24.99■■□□□ 1.59
SUDS3-204ENST00000543473 IGF1RP08069 1367 aa24.97■■□□□ 1.59
SUDS3-204ENST00000543473 CFAP53Q96M91 514 aa24.97■■□□□ 1.59
SUDS3-204ENST00000543473 TNNT2P45379 298 aaPredicted RBP24.97■■□□□ 1.59
SUDS3-204ENST00000543473 RAD54L2Q9Y4B4 1467 aa24.96■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms