RNA–Protein interactions for RNA: ENST00000540756.5

TTC3-225, Transcript of tetratricopeptide repeat domain 3, humanhuman

TSL 2 BASIC

Gene TTC3, Length 2,025 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC3-225ENST00000540756 VPS8Q8N3P4 1428 aa38.55■■■■□ 3.76
TTC3-225ENST00000540756 PCGF6Q9BYE7 350 aa38.53■■■■□ 3.76
TTC3-225ENST00000540756 MAGI1Q96QZ7 1491 aaPredicted RBP38.4■■■■□ 3.74
TTC3-225ENST00000540756 P3H3Q8IVL6 736 aa38.39■■■■□ 3.74
TTC3-225ENST00000540756 TRIM26Q12899 539 aaPredicted RBP38.38■■■■□ 3.73
TTC3-225ENST00000540756 TTBK1Q5TCY1 1321 aaPredicted RBP38.38■■■■□ 3.73
TTC3-225ENST00000540756 GRIN2AQ12879 1464 aa38.33■■■■□ 3.73
TTC3-225ENST00000540756 SYNJ2O15056 1496 aa38.3■■■■□ 3.72
TTC3-225ENST00000540756 FBLN2P98095 1184 aa38.29■■■■□ 3.72
TTC3-225ENST00000540756 CHMP7Q8WUX9 453 aaPredicted RBP38.29■■■■□ 3.72
TTC3-225ENST00000540756 FHOD3Q2V2M9 1422 aa38.25■■■■□ 3.71
TTC3-225ENST00000540756 EFCAB5A4FU69 1503 aa38.23■■■■□ 3.71
TTC3-225ENST00000540756 IQGAP2Q13576 1575 aa38.21■■■■□ 3.71
TTC3-225ENST00000540756 SAMD9Q5K651 1589 aa38.17■■■■□ 3.7
TTC3-225ENST00000540756 APLP2Q06481 763 aa38.14■■■■□ 3.7
TTC3-225ENST00000540756 CEP170Q5SW79 1584 aa38.14■■■■□ 3.7
TTC3-225ENST00000540756 KIAA0586Q9BVV6 1533 aa38.11■■■■□ 3.69
TTC3-225ENST00000540756 NUP160Q12769 1436 aa38.03■■■■□ 3.68
TTC3-225ENST00000540756 PCF11O94913 1555 aaKnown RBP38.02■■■■□ 3.68
TTC3-225ENST00000540756 KANK4Q5T7N3 995 aaPredicted RBP38■■■■□ 3.67
TTC3-225ENST00000540756 UGGT2Q9NYU1 1516 aa38■■■■□ 3.67
TTC3-225ENST00000540756 CHD1O14646 1710 aa37.98■■■■□ 3.67
TTC3-225ENST00000540756 ATP1B4Q9UN42 357 aaPredicted RBP37.94■■■■□ 3.66
TTC3-225ENST00000540756 FMN1Q68DA7 1419 aa37.92■■■■□ 3.66
TTC3-225ENST00000540756 DISP1Q96F81 1524 aa37.9■■■■□ 3.66
TTC3-225ENST00000540756 CASKIN1Q8WXD9 1431 aa37.88■■■■□ 3.65
TTC3-225ENST00000540756 FYCO1Q9BQS8 1478 aa37.85■■■■□ 3.65
TTC3-225ENST00000540756 KIAA0556O60303 1618 aa37.84■■■■□ 3.65
TTC3-225ENST00000540756 TIAM1Q13009 1591 aa37.84■■■■□ 3.65
TTC3-225ENST00000540756 JPH4Q96JJ6 628 aa37.82■■■■□ 3.65
TTC3-225ENST00000540756 MAP3K1Q13233 1512 aa37.77■■■■□ 3.64
TTC3-225ENST00000540756 LRRIQ1Q96JM4 1722 aa37.74■■■■□ 3.63
TTC3-225ENST00000540756 CFAP43Q8NDM7 1665 aa37.73■■■■□ 3.63
TTC3-225ENST00000540756 LRRC9Q6ZRR7 1453 aa37.68■■■■□ 3.62
TTC3-225ENST00000540756 CARMIL2Q6F5E8 1435 aa37.6■■■■□ 3.61
TTC3-225ENST00000540756 PRG4Q92954 1404 aaPredicted RBP37.56■■■■□ 3.6
TTC3-225ENST00000540756 ARID3CA6NKF2 412 aa37.55■■■■□ 3.6
TTC3-225ENST00000540756 HECW1Q76N89 1606 aa37.54■■■■□ 3.6
TTC3-225ENST00000540756 SHROOM2Q13796 1616 aa37.5■■■■□ 3.59
TTC3-225ENST00000540756 EPRSP07814 1512 aaKnown RBP37.48■■■■□ 3.59
TTC3-225ENST00000540756 PLB1Q6P1J6 1458 aa37.47■■■■□ 3.59
TTC3-225ENST00000540756 RAPGEF6Q8TEU7 1601 aa37.47■■■■□ 3.59
TTC3-225ENST00000540756 CDK13Q14004 1512 aaKnown RBP37.46■■■■□ 3.59
TTC3-225ENST00000540756 CLASP1Q7Z460 1538 aa37.46■■■■□ 3.59
TTC3-225ENST00000540756 NUP153P49790 1475 aaKnown RBP37.43■■■■□ 3.58
TTC3-225ENST00000540756 CCDC18Q5T9S5 1454 aa37.43■■■■□ 3.58
TTC3-225ENST00000540756 PHLDB1Q86UU1 1377 aa37.42■■■■□ 3.58
TTC3-225ENST00000540756 MTUS2Q5JR59 1369 aa37.42■■■■□ 3.58
TTC3-225ENST00000540756 MAGI3Q5TCQ9 1506 aa37.42■■■■□ 3.58
TTC3-225ENST00000540756 ERCC6L2Q5T890 1561 aa37.42■■■■□ 3.58
TTC3-225ENST00000540756 HNRNPUL2Q1KMD3 747 aaKnown RBP37.39■■■■□ 3.58
TTC3-225ENST00000540756 RRBP1Q9P2E9 1410 aaKnown RBP37.38■■■■□ 3.58
TTC3-225ENST00000540756 PTPRGP23470 1445 aa37.31■■■■□ 3.56
TTC3-225ENST00000540756 CCNB3Q8WWL7 1395 aa37.3■■■■□ 3.56
TTC3-225ENST00000540756 ABCA8O94911 1581 aa37.28■■■■□ 3.56
TTC3-225ENST00000540756 EHBP1L1Q8N3D4 1523 aa37.28■■■■□ 3.56
TTC3-225ENST00000540756 HRCP23327 699 aa37.27■■■■□ 3.56
TTC3-225ENST00000540756 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP37.24■■■■□ 3.55
TTC3-225ENST00000540756 NCOA2Q15596 1464 aa37.23■■■■□ 3.55
TTC3-225ENST00000540756 SUPT6HQ7KZ85 1726 aaKnown RBP37.21■■■■□ 3.55
TTC3-225ENST00000540756 OSCARQ8IYS5 282 aa37.15■■■■□ 3.54
TTC3-225ENST00000540756 ARHGEF11O15085 1522 aa37.13■■■■□ 3.53
TTC3-225ENST00000540756 ITGAEP38570 1179 aa37.12■■■■□ 3.53
TTC3-225ENST00000540756 FAM50AQ14320 339 aaKnown RBP37.1■■■■□ 3.53
TTC3-225ENST00000540756 ATP10BO94823 1461 aa37.1■■■■□ 3.53
TTC3-225ENST00000540756 UACAQ9BZF9 1416 aa37.07■■■■□ 3.53
TTC3-225ENST00000540756 FGD6Q6ZV73 1430 aa37.07■■■■□ 3.52
TTC3-225ENST00000540756 CDK11AQ9UQ88 783 aaPredicted RBP37.05■■■■□ 3.52
TTC3-225ENST00000540756 MYOM3Q5VTT5 1437 aa37.05■■■■□ 3.52
TTC3-225ENST00000540756 TROQ12816 1431 aaPredicted RBP37■■■■□ 3.51
TTC3-225ENST00000540756 ABCC2Q92887 1545 aa36.94■■■■□ 3.5
TTC3-225ENST00000540756 KIF14Q15058 1648 aa36.93■■■■□ 3.5
TTC3-225ENST00000540756 CCER1Q8TC90 406 aaPredicted RBP36.93■■■■□ 3.5
TTC3-225ENST00000540756 PLEKHD1A6NEE1 506 aa36.91■■■■□ 3.5
TTC3-225ENST00000540756 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP36.89■■■■□ 3.53e-9■■■■□ 21.4
TTC3-225ENST00000540756 PTPN23Q9H3S7 1636 aa36.88■■■■□ 3.49
TTC3-225ENST00000540756 ADCY10Q96PN6 1610 aa36.85■■■■□ 3.49
TTC3-225ENST00000540756 UHRF1BP1LA0JNW5 1464 aa36.79■■■■□ 3.48
TTC3-225ENST00000540756 PTPRKQ15262 1439 aa36.77■■■■□ 3.48
TTC3-225ENST00000540756 MIA2Q96PC5 1412 aa36.77■■■■□ 3.48
TTC3-225ENST00000540756 TCOF1Q13428 1488 aaKnown RBP36.77■■■■□ 3.48
TTC3-225ENST00000540756 ZCCHC11Q5TAX3 1644 aaKnown RBP36.75■■■■□ 3.47
TTC3-225ENST00000540756 ZNF644Q9H582 1327 aaPredicted RBP36.73■■■■□ 3.47
TTC3-225ENST00000540756 GPATCH8Q9UKJ3 1502 aaKnown RBP36.73■■■■□ 3.47
TTC3-225ENST00000540756 ABCC10Q5T3U5 1492 aa36.71■■■■□ 3.47
TTC3-225ENST00000540756 KDM5BQ9UGL1 1544 aa36.71■■■■□ 3.47
TTC3-225ENST00000540756 ZEB1P37275 1124 aaPredicted RBP36.66■■■■□ 3.46
TTC3-225ENST00000540756 CDC42BPAQ5VT25 1732 aa36.65■■■■□ 3.46
TTC3-225ENST00000540756 ITSN2Q9NZM3 1697 aa36.65■■■■□ 3.46
TTC3-225ENST00000540756 CFDP1Q9UEE9 299 aaPredicted RBP36.64■■■■□ 3.46
TTC3-225ENST00000540756 RAB3GAP2Q9H2M9 1393 aa36.64■■■■□ 3.46
TTC3-225ENST00000540756 SETD5Q9C0A6 1442 aa36.62■■■■□ 3.45
TTC3-225ENST00000540756 KCNH8Q96L42 1107 aa36.59■■■■□ 3.45
TTC3-225ENST00000540756 ZNF777Q9ULD5 760 aaPredicted RBP36.59■■■■□ 3.45
TTC3-225ENST00000540756 CHIC2Q9UKJ5 165 aa36.56■■■■□ 3.44
TTC3-225ENST00000540756 CAMSAP2Q08AD1 1489 aa36.55■■■■□ 3.44
TTC3-225ENST00000540756 TTC37Q6PGP7 1564 aa36.54■■■■□ 3.44
TTC3-225ENST00000540756 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP36.53■■■■□ 3.448e-9■■■■□ 23.3
TTC3-225ENST00000540756 DHX57Q6P158 1386 aaKnown RBP36.53■■■■□ 3.44
TTC3-225ENST00000540756 DAPK1P53355 1430 aa36.48■■■■□ 3.43
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms