RNA–Protein interactions for RNA: ENST00000539338.6

CACNB1-206, Transcript of calcium voltage-gated channel auxiliary subunit beta 1, humanhuman

TSL 1 (best)

Gene CACNB1, Length 5,308 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNB1-206ENST00000539338 HAP1P54257 671 aaPredicted RBP19.71■□□□□ 0.75
CACNB1-206ENST00000539338 CEP162Q5TB80 1403 aa19.65■□□□□ 0.74
CACNB1-206ENST00000539338 MTUS2Q5JR59 1369 aa19.63■□□□□ 0.73
CACNB1-206ENST00000539338 TMC1Q8TDI8 760 aa19.62■□□□□ 0.73
CACNB1-206ENST00000539338 IRX6P78412 446 aaPredicted RBP19.62■□□□□ 0.73
CACNB1-206ENST00000539338 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.62■□□□□ 0.73
CACNB1-206ENST00000539338 MRS2Q9HD23 443 aa19.62■□□□□ 0.73
CACNB1-206ENST00000539338 KDM2AQ9Y2K7 1162 aa19.59■□□□□ 0.73
CACNB1-206ENST00000539338 CCDC136Q96JN2 1154 aa19.59■□□□□ 0.73
CACNB1-206ENST00000539338 GOLGA3Q08378 1498 aa19.56■□□□□ 0.72
CACNB1-206ENST00000539338 RRP7BPQ9NSQ0 103 aa19.55■□□□□ 0.72
CACNB1-206ENST00000539338 A0A0G2JS52 829 aa19.51■□□□□ 0.71
CACNB1-206ENST00000539338 HDGFP51858 240 aaKnown RBP19.51■□□□□ 0.71
CACNB1-206ENST00000539338 SMARCA2P51531 1590 aa19.51■□□□□ 0.71
CACNB1-206ENST00000539338 EEA1Q15075 1411 aa19.5■□□□□ 0.71
CACNB1-206ENST00000539338 NBR1Q14596 966 aa19.49■□□□□ 0.71
CACNB1-206ENST00000539338 CYB5RLQ6IPT4 315 aa19.49■□□□□ 0.71
CACNB1-206ENST00000539338 EIF4G2P78344 907 aaKnown RBP eCLIP19.48■□□□□ 0.712e-8■■■■■ 35.8
CACNB1-206ENST00000539338 WRNQ14191 1432 aaPredicted RBP eCLIP19.47■□□□□ 0.71
CACNB1-206ENST00000539338 BAZ1AQ9NRL2 1556 aaPredicted RBP19.45■□□□□ 0.7
CACNB1-206ENST00000539338 WDR43Q15061 677 aaKnown RBP eCLIP19.44■□□□□ 0.7
CACNB1-206ENST00000539338 CARMIL2Q6F5E8 1435 aa19.44■□□□□ 0.7
CACNB1-206ENST00000539338 HSP90AA1P07900 732 aaKnown RBP19.44■□□□□ 0.7
CACNB1-206ENST00000539338 UPF2Q9HAU5 1272 aaKnown RBP19.43■□□□□ 0.7
CACNB1-206ENST00000539338 TNIKQ9UKE5 1360 aa19.43■□□□□ 0.7
CACNB1-206ENST00000539338 SENP3-EIF4A1A0A087X0R7 540 aa19.4■□□□□ 0.7
CACNB1-206ENST00000539338 MLECQ14165 292 aa19.39■□□□□ 0.69
CACNB1-206ENST00000539338 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.38■□□□□ 0.69
CACNB1-206ENST00000539338 EIF5BO60841 1220 aaKnown RBP19.37■□□□□ 0.69
CACNB1-206ENST00000539338 CEP164Q9UPV0 1460 aa19.34■□□□□ 0.69
CACNB1-206ENST00000539338 KIF27Q86VH2 1401 aa19.34■□□□□ 0.69
CACNB1-206ENST00000539338 SIN3AQ96ST3 1273 aa19.33■□□□□ 0.68
CACNB1-206ENST00000539338 ANP32BQ92688 251 aaKnown RBP19.3■□□□□ 0.68
CACNB1-206ENST00000539338 ARXQ96QS3 562 aa19.29■□□□□ 0.68
CACNB1-206ENST00000539338 RGL3Q3MIN7 710 aa19.29■□□□□ 0.68
CACNB1-206ENST00000539338 SENP3Q9H4L4 574 aaPredicted RBP19.29■□□□□ 0.68
CACNB1-206ENST00000539338 SUPT16HQ9Y5B9 1047 aaKnown RBP19.28■□□□□ 0.68
CACNB1-206ENST00000539338 FOXD1Q16676 465 aa19.26■□□□□ 0.67
CACNB1-206ENST00000539338 CADPSQ9ULU8 1353 aa19.24■□□□□ 0.67
CACNB1-206ENST00000539338 ZBTB7CA1YPR0 619 aa19.22■□□□□ 0.67
CACNB1-206ENST00000539338 SOGA1O94964 1423 aa19.22■□□□□ 0.67
CACNB1-206ENST00000539338 DCAF8L1A6NGE4 600 aa19.21■□□□□ 0.67
CACNB1-206ENST00000539338 CFDP1Q9UEE9 299 aaPredicted RBP19.21■□□□□ 0.67
CACNB1-206ENST00000539338 KANK1Q14678 1352 aa19.17■□□□□ 0.66
CACNB1-206ENST00000539338 CARD11Q9BXL7 1154 aa19.16■□□□□ 0.66
CACNB1-206ENST00000539338 EIF4G1Q04637 1599 aaKnown RBP19.15■□□□□ 0.66
CACNB1-206ENST00000539338 LMOD2Q6P5Q4 547 aa19.15■□□□□ 0.66
CACNB1-206ENST00000539338 PLEKHG5O94827 1062 aa19.14■□□□□ 0.66
CACNB1-206ENST00000539338 CCNB3Q8WWL7 1395 aa19.14■□□□□ 0.65
CACNB1-206ENST00000539338 ABCC8Q09428 1581 aa19.13■□□□□ 0.65
CACNB1-206ENST00000539338 MROH2BQ7Z745 1585 aa19.1■□□□□ 0.65
CACNB1-206ENST00000539338 KNSTRNQ9Y448 316 aa19.09■□□□□ 0.65
CACNB1-206ENST00000539338 EFCAB2Q5VUJ9 269 aa19.09■□□□□ 0.65
CACNB1-206ENST00000539338 EID1Q9Y6B2 187 aa19.09■□□□□ 0.65
CACNB1-206ENST00000539338 ANP32EQ9BTT0 268 aa19.08■□□□□ 0.65
CACNB1-206ENST00000539338 FAM69CQ0P6D2 419 aa19.07■□□□□ 0.64
CACNB1-206ENST00000539338 MYH16Q9H6N6 1097 aa19.07■□□□□ 0.64
CACNB1-206ENST00000539338 CUX2O14529 1486 aa19.05■□□□□ 0.64
CACNB1-206ENST00000539338 DDRGK1Q96HY6 314 aa19.05■□□□□ 0.64
CACNB1-206ENST00000539338 PPP4R2Q9NY27 417 aa19.04■□□□□ 0.64
CACNB1-206ENST00000539338 TDRD9Q8NDG6 1382 aaKnown RBP19.04■□□□□ 0.64
CACNB1-206ENST00000539338 NEUROD2Q15784 382 aa19.03■□□□□ 0.64
CACNB1-206ENST00000539338 KANK4Q5T7N3 995 aaPredicted RBP19.02■□□□□ 0.63
CACNB1-206ENST00000539338 PHF23Q9BUL5 403 aaPredicted RBP19.01■□□□□ 0.63
CACNB1-206ENST00000539338 BECN1Q14457 450 aa19.01■□□□□ 0.63
CACNB1-206ENST00000539338 CARMIL1Q5VZK9 1371 aa19.01■□□□□ 0.63
CACNB1-206ENST00000539338 B4GALNT3Q6L9W6 998 aa19■□□□□ 0.63
CACNB1-206ENST00000539338 CDCA8Q53HL2 280 aa19■□□□□ 0.63
CACNB1-206ENST00000539338 FHAD1B1AJZ9 1412 aa18.99■□□□□ 0.63
CACNB1-206ENST00000539338 CC2D1BQ5T0F9 858 aaKnown RBP18.99■□□□□ 0.63
CACNB1-206ENST00000539338 MEX3CQ5U5Q3 659 aaKnown RBP18.99■□□□□ 0.63
CACNB1-206ENST00000539338 VPS8Q8N3P4 1428 aa18.99■□□□□ 0.63
CACNB1-206ENST00000539338 CFAP53Q96M91 514 aa18.99■□□□□ 0.63
CACNB1-206ENST00000539338 NPHP1O15259 732 aa18.98■□□□□ 0.63
CACNB1-206ENST00000539338 GGT6Q6P531 493 aa18.97■□□□□ 0.63
CACNB1-206ENST00000539338 PPM1GO15355 546 aaPredicted RBP18.97■□□□□ 0.63
CACNB1-206ENST00000539338 CCDC88BA6NC98 1476 aa18.97■□□□□ 0.63
CACNB1-206ENST00000539338 JPH4Q96JJ6 628 aa18.96■□□□□ 0.63
CACNB1-206ENST00000539338 POGKQ9P215 609 aa18.96■□□□□ 0.63
CACNB1-206ENST00000539338 CCDC9Q9Y3X0 531 aaKnown RBP18.96■□□□□ 0.63
CACNB1-206ENST00000539338 RGS3P49796 1198 aa18.94■□□□□ 0.62
CACNB1-206ENST00000539338 SETD5Q9C0A6 1442 aa18.94■□□□□ 0.62
CACNB1-206ENST00000539338 LAS1LQ9Y4W2 734 aaKnown RBP18.94■□□□□ 0.62
CACNB1-206ENST00000539338 TNNT2P45379 298 aaPredicted RBP18.93■□□□□ 0.62
CACNB1-206ENST00000539338 DCAF11Q8TEB1 546 aa18.93■□□□□ 0.62
CACNB1-206ENST00000539338 TOP2AP11388 1531 aaKnown RBP18.93■□□□□ 0.62
CACNB1-206ENST00000539338 FANCD2Q9BXW9 1451 aa18.92■□□□□ 0.62
CACNB1-206ENST00000539338 FTSJ3Q8IY81 847 aaKnown RBP18.92■□□□□ 0.62
CACNB1-206ENST00000539338 HSPA5P11021 654 aaKnown RBP18.91■□□□□ 0.62
CACNB1-206ENST00000539338 FRAT1Q92837 279 aaPredicted RBP18.9■□□□□ 0.62
CACNB1-206ENST00000539338 WIZO95785 1651 aa18.9■□□□□ 0.62
CACNB1-206ENST00000539338 TIMELESSQ9UNS1 1208 aa18.9■□□□□ 0.62
CACNB1-206ENST00000539338 ATAD2BQ9ULI0 1458 aa18.89■□□□□ 0.61
CACNB1-206ENST00000539338 CCER2I3L3R5 266 aa18.88■□□□□ 0.61
CACNB1-206ENST00000539338 NOP58Q9Y2X3 529 aaKnown RBP18.87■□□□□ 0.61
CACNB1-206ENST00000539338 GLIPR1L2Q4G1C9 344 aa18.87■□□□□ 0.61
CACNB1-206ENST00000539338 ARHGAP35Q9NRY4 1499 aa18.85■□□□□ 0.61
CACNB1-206ENST00000539338 PTPRGP23470 1445 aa18.85■□□□□ 0.61
CACNB1-206ENST00000539338 MAPK8IP3Q9UPT6 1336 aa18.85■□□□□ 0.61
CACNB1-206ENST00000539338 RAB3GAP2Q9H2M9 1393 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms