RNA–Protein interactions for RNA: ENST00000517691.1

SKP1-204, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 1 (best)

Gene SKP1, Length 2,033 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-204ENST00000517691 ZNF692Q9BU19 519 aaPredicted RBP6.15□□□□□ -1.42
SKP1-204ENST00000517691 ATF5Q9Y2D1 282 aaPredicted RBP6.14□□□□□ -1.43
SKP1-204ENST00000517691 SLC4A1APQ9BWU0 796 aaKnown RBP6.11□□□□□ -1.43
SKP1-204ENST00000517691 CSRNP3Q8WYN3 585 aa6.11□□□□□ -1.43
SKP1-204ENST00000517691 PHF12Q96QT6 1004 aa6.09□□□□□ -1.43
SKP1-204ENST00000517691 SNPHO15079 494 aa6.07□□□□□ -1.44
SKP1-204ENST00000517691 SLAIN1Q8ND83 568 aa6.05□□□□□ -1.44
SKP1-204ENST00000517691 POTEFA5A3E0 1075 aa6.04□□□□□ -1.44
SKP1-204ENST00000517691 KRTAP3-3Q9BYR6 98 aa6.03□□□□□ -1.44
SKP1-204ENST00000517691 KRTAP3-2Q9BYR7 98 aa6.03□□□□□ -1.44
SKP1-204ENST00000517691 RNF166Q96A37 237 aaPredicted RBP6.01□□□□□ -1.45
SKP1-204ENST00000517691 ATN1P54259 1190 aaPredicted RBP6□□□□□ -1.45
SKP1-204ENST00000517691 MS4A3Q96HJ5 214 aa6□□□□□ -1.45
SKP1-204ENST00000517691 PABPN1Q86U42 306 aaKnown RBP eCLIP5.99□□□□□ -1.45
SKP1-204ENST00000517691 ZBTB22O15209 634 aa5.98□□□□□ -1.45
SKP1-204ENST00000517691 SEC24BO95487 1268 aa5.96□□□□□ -1.46
SKP1-204ENST00000517691 MARVELD3Q96A59 401 aa5.96□□□□□ -1.46
SKP1-204ENST00000517691 EMP3P54852 163 aa5.92□□□□□ -1.46
SKP1-204ENST00000517691 HS3ST6Q96QI5 342 aa5.9□□□□□ -1.47
SKP1-204ENST00000517691 IER5LQ5T953 404 aa5.89□□□□□ -1.47
SKP1-204ENST00000517691 CREBZFQ9NS37 354 aa5.89□□□□□ -1.47
SKP1-204ENST00000517691 NPM1P06748 294 aaKnown RBP eCLIP5.89□□□□□ -1.47
SKP1-204ENST00000517691 COLQQ9Y215 455 aaPredicted RBP5.89□□□□□ -1.47
SKP1-204ENST00000517691 MYT1LQ9UL68 1186 aa5.88□□□□□ -1.47
SKP1-204ENST00000517691 TIE1P35590 1138 aa5.86□□□□□ -1.47
SKP1-204ENST00000517691 BMP2KQ9NSY1 1161 aaPredicted RBP5.86□□□□□ -1.47
SKP1-204ENST00000517691 PTGER2P43116 358 aa5.84□□□□□ -1.47
SKP1-204ENST00000517691 FAM205CA6NFA0 338 aa5.82□□□□□ -1.48
SKP1-204ENST00000517691 POTEB3A0JP26 581 aa5.82□□□□□ -1.48
SKP1-204ENST00000517691 POTEBQ6S5H4 581 aa5.82□□□□□ -1.48
SKP1-204ENST00000517691 FOXD4L1Q9NU39 408 aa5.82□□□□□ -1.48
SKP1-204ENST00000517691 MKRN4PQ13434 485 aaPredicted RBP5.81□□□□□ -1.48
SKP1-204ENST00000517691 SLC24A1O60721 1099 aa5.77□□□□□ -1.49
SKP1-204ENST00000517691 STAG3Q9UJ98 1225 aa5.77□□□□□ -1.49
SKP1-204ENST00000517691 PLA2G2EQ9NZK7 142 aa5.76□□□□□ -1.49
SKP1-204ENST00000517691 EIF2AK3Q9NZJ5 1116 aaKnown RBP5.75□□□□□ -1.49
SKP1-204ENST00000517691 RGS20O76081 388 aa5.74□□□□□ -1.49
SKP1-204ENST00000517691 IRX2Q9BZI1 471 aaPredicted RBP5.72□□□□□ -1.49
SKP1-204ENST00000517691 PLCG2P16885 1265 aa5.72□□□□□ -1.49
SKP1-204ENST00000517691 TTLL13PA6NNM8 815 aa5.71□□□□□ -1.5
SKP1-204ENST00000517691 ATXN8OSP0DMR3 200 aa5.71□□□□□ -1.5
SKP1-204ENST00000517691 KIF12Q96FN5 646 aa5.7□□□□□ -1.5
SKP1-204ENST00000517691 TRIM35Q9UPQ4 493 aa5.67□□□□□ -1.5
SKP1-204ENST00000517691 TRPC6Q9Y210 931 aa5.65□□□□□ -1.5
SKP1-204ENST00000517691 CCDC61Q9Y6R9 512 aa5.65□□□□□ -1.5
SKP1-204ENST00000517691 MNX1P50219 401 aaPredicted RBP5.64□□□□□ -1.51
SKP1-204ENST00000517691 LOC100996750A0A140TA64 210 aa5.62□□□□□ -1.51
SKP1-204ENST00000517691 KRTAP4-6Q9BYQ5 205 aa5.62□□□□□ -1.51
SKP1-204ENST00000517691 HCSTQ9UBK5 93 aa5.6□□□□□ -1.51
SKP1-204ENST00000517691 IRX5P78411 483 aaPredicted RBP5.59□□□□□ -1.51
SKP1-204ENST00000517691 ERBB3P21860 1342 aa5.58□□□□□ -1.52
SKP1-204ENST00000517691 TSPYL2Q9H2G4 693 aaPredicted RBP5.57□□□□□ -1.52
SKP1-204ENST00000517691 OCEL1Q9H607 264 aa5.57□□□□□ -1.52
SKP1-204ENST00000517691 MAP3K13O43283 966 aa5.57□□□□□ -1.52
SKP1-204ENST00000517691 SGIP1Q9BQI5 828 aa5.57□□□□□ -1.52
SKP1-204ENST00000517691 HOXB1P14653 301 aaPredicted RBP5.55□□□□□ -1.52
SKP1-204ENST00000517691 CCDC180Q9P1Z9 1646 aa5.54□□□□□ -1.52
SKP1-204ENST00000517691 C3orf67Q6ZVT6 689 aa5.53□□□□□ -1.52
SKP1-204ENST00000517691 ZNF687Q8N1G0 1237 aa5.53□□□□□ -1.52
SKP1-204ENST00000517691 ABCC9O60706 1549 aa5.5□□□□□ -1.53
SKP1-204ENST00000517691 Q6ZNB5 142 aa5.48□□□□□ -1.53
SKP1-204ENST00000517691 RTN4Q9NQC3 1192 aaKnown RBP5.48□□□□□ -1.53
SKP1-204ENST00000517691 L3MBTL3Q96JM7 780 aaPredicted RBP5.47□□□□□ -1.53
SKP1-204ENST00000517691 VARS2Q5ST30 1063 aaKnown RBP5.47□□□□□ -1.53
SKP1-204ENST00000517691 FKBP8Q14318 412 aa5.46□□□□□ -1.54
SKP1-204ENST00000517691 ZNF710Q8N1W2 664 aa5.46□□□□□ -1.54
SKP1-204ENST00000517691 IFFO2Q5TF58 517 aa5.45□□□□□ -1.54
SKP1-204ENST00000517691 ANKRD13DQ6ZTN6 518 aa5.43□□□□□ -1.54
SKP1-204ENST00000517691 TMEM106CQ9BVX2 250 aa5.43□□□□□ -1.54
SKP1-204ENST00000517691 AMER1Q5JTC6 1135 aaPredicted RBP5.43□□□□□ -1.54
SKP1-204ENST00000517691 HOXB3P14651 431 aaPredicted RBP5.41□□□□□ -1.54
SKP1-204ENST00000517691 DOK7Q18PE1 504 aa5.41□□□□□ -1.54
SKP1-204ENST00000517691 DCAF8L2P0C7V8 631 aa5.41□□□□□ -1.54
SKP1-204ENST00000517691 RIMBP2O15034 1052 aa5.4□□□□□ -1.55
SKP1-204ENST00000517691 PCDHB13Q9Y5F0 798 aa5.4□□□□□ -1.55
SKP1-204ENST00000517691 LAPTM4AQ15012 233 aa5.38□□□□□ -1.55
SKP1-204ENST00000517691 LSM11P83369 360 aaKnown RBP eCLIP5.37□□□□□ -1.55
SKP1-204ENST00000517691 ZSWIM6Q9HCJ5 1215 aa5.35□□□□□ -1.55
SKP1-204ENST00000517691 A0A0G2JS52 829 aa5.33□□□□□ -1.56
SKP1-204ENST00000517691 TRAF7Q6Q0C0 670 aa5.33□□□□□ -1.56
SKP1-204ENST00000517691 IFNL1Q8IU54 200 aa5.3□□□□□ -1.56
SKP1-204ENST00000517691 PDCD7Q8N8D1 485 aaKnown RBP5.3□□□□□ -1.56
SKP1-204ENST00000517691 PBX2P40425 430 aa5.29□□□□□ -1.56
SKP1-204ENST00000517691 ZNF775Q96BV0 537 aaPredicted RBP5.26□□□□□ -1.57
SKP1-204ENST00000517691 ZCCHC6Q5VYS8 1495 aaKnown RBP5.25□□□□□ -1.57
SKP1-204ENST00000517691 SPDYE4A6NLX3 237 aa5.25□□□□□ -1.57
SKP1-204ENST00000517691 RB1CC1Q8TDY2 1594 aa5.25□□□□□ -1.57
SKP1-204ENST00000517691 ZNF787Q6DD87 383 aa5.24□□□□□ -1.57
SKP1-204ENST00000517691 NACADO15069 1562 aa5.24□□□□□ -1.57
SKP1-204ENST00000517691 RASEFQ8IZ41 740 aa5.23□□□□□ -1.57
SKP1-204ENST00000517691 LCE2BO14633 110 aa5.22□□□□□ -1.57
SKP1-204ENST00000517691 STK17AQ9UEE5 414 aa5.21□□□□□ -1.58
SKP1-204ENST00000517691 MYO15BQ96JP2 1530 aa5.2□□□□□ -1.58
SKP1-204ENST00000517691 DCAF1Q9Y4B6 1507 aa5.2□□□□□ -1.58
SKP1-204ENST00000517691 G3V3G9 751 aa5.19□□□□□ -1.58
SKP1-204ENST00000517691 DCAF8Q5TAQ9 597 aa5.19□□□□□ -1.58
SKP1-204ENST00000517691 GPR153Q6NV75 609 aa5.19□□□□□ -1.58
SKP1-204ENST00000517691 PLEKHG5O94827 1062 aa5.18□□□□□ -1.58
SKP1-204ENST00000517691 PROM2Q8N271 834 aa5.18□□□□□ -1.58
SKP1-204ENST00000517691 MKRN3Q13064 507 aaKnown RBP5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms