RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 RNF166Q96A37 237 aaPredicted RBP5.38□□□□□ -1.55
RNU6-539P-201ENST00000516665 MYCNP04198 464 aaPredicted RBP5.36□□□□□ -1.55
RNU6-539P-201ENST00000516665 SSUH2Q9Y2M2 353 aa5.36□□□□□ -1.55
RNU6-539P-201ENST00000516665 ATN1P54259 1190 aaPredicted RBP5.35□□□□□ -1.55
RNU6-539P-201ENST00000516665 MS4A3Q96HJ5 214 aa5.35□□□□□ -1.55
RNU6-539P-201ENST00000516665 POTEB3A0JP26 581 aa5.34□□□□□ -1.55
RNU6-539P-201ENST00000516665 POTEBQ6S5H4 581 aa5.34□□□□□ -1.55
RNU6-539P-201ENST00000516665 ZNF692Q9BU19 519 aaPredicted RBP5.31□□□□□ -1.56
RNU6-539P-201ENST00000516665 COLQQ9Y215 455 aaPredicted RBP5.3□□□□□ -1.56
RNU6-539P-201ENST00000516665 HS3ST6Q96QI5 342 aa5.28□□□□□ -1.56
RNU6-539P-201ENST00000516665 EMP3P54852 163 aa5.27□□□□□ -1.57
RNU6-539P-201ENST00000516665 PAK3O75914 559 aaPredicted RBP5.24□□□□□ -1.57
RNU6-539P-201ENST00000516665 FAM205CA6NFA0 338 aa5.23□□□□□ -1.57
RNU6-539P-201ENST00000516665 PABPN1Q86U42 306 aaKnown RBP eCLIP5.22□□□□□ -1.57
RNU6-539P-201ENST00000516665 MYT1LQ9UL68 1186 aa5.22□□□□□ -1.57
RNU6-539P-201ENST00000516665 SEC24BO95487 1268 aa5.21□□□□□ -1.58
RNU6-539P-201ENST00000516665 BMP2KQ9NSY1 1161 aaPredicted RBP5.19□□□□□ -1.58
RNU6-539P-201ENST00000516665 LOC100996750A0A140TA64 210 aa5.17□□□□□ -1.58
RNU6-539P-201ENST00000516665 FBLN2P98095 1184 aa5.17□□□□□ -1.58
RNU6-539P-201ENST00000516665 KRTAP4-6Q9BYQ5 205 aa5.17□□□□□ -1.58
RNU6-539P-201ENST00000516665 SNPHO15079 494 aa5.16□□□□□ -1.58
RNU6-539P-201ENST00000516665 CREBZFQ9NS37 354 aa5.15□□□□□ -1.59
RNU6-539P-201ENST00000516665 PLA2G2EQ9NZK7 142 aa5.15□□□□□ -1.59
RNU6-539P-201ENST00000516665 TRPC6Q9Y210 931 aa5.15□□□□□ -1.59
RNU6-539P-201ENST00000516665 MKRN4PQ13434 485 aaPredicted RBP5.1□□□□□ -1.59
RNU6-539P-201ENST00000516665 IRX2Q9BZI1 471 aaPredicted RBP5.09□□□□□ -1.59
RNU6-539P-201ENST00000516665 TTLL13PA6NNM8 815 aa5.03□□□□□ -1.6
RNU6-539P-201ENST00000516665 TIE1P35590 1138 aa5.03□□□□□ -1.6
RNU6-539P-201ENST00000516665 IER5LQ5T953 404 aa5.01□□□□□ -1.61
RNU6-539P-201ENST00000516665 TRIM35Q9UPQ4 493 aa5□□□□□ -1.61
RNU6-539P-201ENST00000516665 EIF2AK3Q9NZJ5 1116 aaKnown RBP4.98□□□□□ -1.61
RNU6-539P-201ENST00000516665 KIF12Q96FN5 646 aa4.97□□□□□ -1.61
RNU6-539P-201ENST00000516665 PLCG2P16885 1265 aa4.94□□□□□ -1.62
RNU6-539P-201ENST00000516665 PTGER2P43116 358 aa4.94□□□□□ -1.62
RNU6-539P-201ENST00000516665 Q6ZNB5 142 aa4.94□□□□□ -1.62
RNU6-539P-201ENST00000516665 NPM1P06748 294 aaKnown RBP eCLIP4.93□□□□□ -1.62
RNU6-539P-201ENST00000516665 MNX1P50219 401 aaPredicted RBP4.93□□□□□ -1.62
RNU6-539P-201ENST00000516665 CCDC61Q9Y6R9 512 aa4.92□□□□□ -1.62
RNU6-539P-201ENST00000516665 TSPYL2Q9H2G4 693 aaPredicted RBP4.91□□□□□ -1.62
RNU6-539P-201ENST00000516665 ERBB3P21860 1342 aa4.9□□□□□ -1.63
RNU6-539P-201ENST00000516665 MAP3K13O43283 966 aa4.89□□□□□ -1.63
RNU6-539P-201ENST00000516665 IRX5P78411 483 aaPredicted RBP4.88□□□□□ -1.63
RNU6-539P-201ENST00000516665 LCE2BO14633 110 aa4.87□□□□□ -1.63
RNU6-539P-201ENST00000516665 VARS2Q5ST30 1063 aaKnown RBP4.87□□□□□ -1.63
RNU6-539P-201ENST00000516665 HCSTQ9UBK5 93 aa4.85□□□□□ -1.63
RNU6-539P-201ENST00000516665 RGS20O76081 388 aa4.84□□□□□ -1.63
RNU6-539P-201ENST00000516665 ANKRD13DQ6ZTN6 518 aa4.84□□□□□ -1.63
RNU6-539P-201ENST00000516665 HOXB1P14653 301 aaPredicted RBP4.82□□□□□ -1.64
RNU6-539P-201ENST00000516665 ZNF687Q8N1G0 1237 aa4.8□□□□□ -1.64
RNU6-539P-201ENST00000516665 HOXB3P14651 431 aaPredicted RBP4.79□□□□□ -1.64
RNU6-539P-201ENST00000516665 C3orf67Q6ZVT6 689 aa4.78□□□□□ -1.64
RNU6-539P-201ENST00000516665 ZNF775Q96BV0 537 aaPredicted RBP4.78□□□□□ -1.64
RNU6-539P-201ENST00000516665 OCEL1Q9H607 264 aa4.78□□□□□ -1.64
RNU6-539P-201ENST00000516665 KCNA4P22459 653 aa4.76□□□□□ -1.65
RNU6-539P-201ENST00000516665 ZNF710Q8N1W2 664 aa4.73□□□□□ -1.65
RNU6-539P-201ENST00000516665 TMEM106CQ9BVX2 250 aa4.73□□□□□ -1.65
RNU6-539P-201ENST00000516665 FOXD4L1Q9NU39 408 aa4.73□□□□□ -1.65
RNU6-539P-201ENST00000516665 STAG3Q9UJ98 1225 aa4.73□□□□□ -1.65
RNU6-539P-201ENST00000516665 TRAF7Q6Q0C0 670 aa4.72□□□□□ -1.65
RNU6-539P-201ENST00000516665 LSM11P83369 360 aaKnown RBP eCLIP4.71□□□□□ -1.66
RNU6-539P-201ENST00000516665 A0A0G2JS52 829 aa4.69□□□□□ -1.66
RNU6-539P-201ENST00000516665 SUZ12Q15022 739 aaKnown RBP4.67□□□□□ -1.66
RNU6-539P-201ENST00000516665 ZNF787Q6DD87 383 aa4.67□□□□□ -1.66
RNU6-539P-201ENST00000516665 PCDHB13Q9Y5F0 798 aa4.67□□□□□ -1.66
RNU6-539P-201ENST00000516665 PDCD7Q8N8D1 485 aaKnown RBP4.65□□□□□ -1.67
RNU6-539P-201ENST00000516665 IFNL1Q8IU54 200 aa4.64□□□□□ -1.67
RNU6-539P-201ENST00000516665 DOK7Q18PE1 504 aa4.62□□□□□ -1.67
RNU6-539P-201ENST00000516665 IFFO2Q5TF58 517 aa4.62□□□□□ -1.67
RNU6-539P-201ENST00000516665 ATXN8OSP0DMR3 200 aa4.61□□□□□ -1.67
RNU6-539P-201ENST00000516665 SGIP1Q9BQI5 828 aa4.61□□□□□ -1.67
RNU6-539P-201ENST00000516665 L3MBTL3Q96JM7 780 aaPredicted RBP4.59□□□□□ -1.67
RNU6-539P-201ENST00000516665 POTEEQ6S8J3 1075 aa4.58□□□□□ -1.68
RNU6-539P-201ENST00000516665 RASEFQ8IZ41 740 aa4.58□□□□□ -1.68
RNU6-539P-201ENST00000516665 LAPTM4AQ15012 233 aa4.56□□□□□ -1.68
RNU6-539P-201ENST00000516665 KRTAP4-8Q9BYQ9 185 aa4.56□□□□□ -1.68
RNU6-539P-201ENST00000516665 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.55□□□□□ -1.68
RNU6-539P-201ENST00000516665 RIMBP2O15034 1052 aa4.55□□□□□ -1.68
RNU6-539P-201ENST00000516665 KCTD12Q96CX2 325 aaKnown RBP4.55□□□□□ -1.68
RNU6-539P-201ENST00000516665 GFRA3O60609 400 aa4.54□□□□□ -1.68
RNU6-539P-201ENST00000516665 LCE2AQ5TA79 106 aaPredicted RBP4.53□□□□□ -1.68
RNU6-539P-201ENST00000516665 STK17AQ9UEE5 414 aa4.53□□□□□ -1.68
RNU6-539P-201ENST00000516665 AXIN2Q9Y2T1 843 aa4.53□□□□□ -1.68
RNU6-539P-201ENST00000516665 GPR153Q6NV75 609 aa4.52□□□□□ -1.69
RNU6-539P-201ENST00000516665 ADGRD1Q6QNK2 874 aa4.5□□□□□ -1.69
RNU6-539P-201ENST00000516665 KRTAP1-3Q8IUG1 177 aa4.5□□□□□ -1.69
RNU6-539P-201ENST00000516665 KRTAP9-2Q9BYQ4 174 aa4.5□□□□□ -1.69
RNU6-539P-201ENST00000516665 KRTAP9-6A0A140TA67 174 aa4.49□□□□□ -1.69
RNU6-539P-201ENST00000516665 PTPN5P54829 565 aa4.49□□□□□ -1.69
RNU6-539P-201ENST00000516665 ZSWIM6Q9HCJ5 1215 aa4.48□□□□□ -1.69
RNU6-539P-201ENST00000516665 ZNF316A6NFI3 1004 aaPredicted RBP4.47□□□□□ -1.69
RNU6-539P-201ENST00000516665 PBX2P40425 430 aa4.47□□□□□ -1.69
RNU6-539P-201ENST00000516665 TREML4Q6UXN2 200 aa4.47□□□□□ -1.69
RNU6-539P-201ENST00000516665 DPY19L2Q6NUT2 758 aa4.44□□□□□ -1.7
RNU6-539P-201ENST00000516665 ARSIQ5FYB1 569 aa4.43□□□□□ -1.7
RNU6-539P-201ENST00000516665 KHSRPQ92945 711 aaKnown RBP eCLIP4.43□□□□□ -1.7
RNU6-539P-201ENST00000516665 NRG2O14511 850 aaPredicted RBP4.42□□□□□ -1.7
RNU6-539P-201ENST00000516665 HRO43593 1189 aa4.42□□□□□ -1.7
RNU6-539P-201ENST00000516665 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP4.42□□□□□ -1.7
RNU6-539P-201ENST00000516665 XP32Q5T750 250 aa4.41□□□□□ -1.7
RNU6-539P-201ENST00000516665 POTECB2RU33 542 aa4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms