RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 CHIC2Q9UKJ5 165 aa15.16■□□□□ 0.02
TCOF1-211ENST00000513346 NOP58Q9Y2X3 529 aaKnown RBP15.14■□□□□ 0.01
TCOF1-211ENST00000513346 SOGA1O94964 1423 aa15.13■□□□□ 0.01
TCOF1-211ENST00000513346 MTUS2Q5JR59 1369 aa15.13■□□□□ 0.01
TCOF1-211ENST00000513346 KIF27Q86VH2 1401 aa15.13■□□□□ 0.01
TCOF1-211ENST00000513346 CEP164Q9UPV0 1460 aa15.12■□□□□ 0.01
TCOF1-211ENST00000513346 PPP4R2Q9NY27 417 aa15.12■□□□□ 0.01
TCOF1-211ENST00000513346 CCDC88BA6NC98 1476 aa15.11■□□□□ 0.01
TCOF1-211ENST00000513346 KCNH8Q96L42 1107 aa15.11■□□□□ 0.01
TCOF1-211ENST00000513346 MRS2Q9HD23 443 aa15.1■□□□□ 0.01
TCOF1-211ENST00000513346 HIRIP3Q9BW71 556 aaPredicted RBP15.1■□□□□ 0.01
TCOF1-211ENST00000513346 CHGAP10645 457 aaKnown RBP15.09■□□□□ 0.01
TCOF1-211ENST00000513346 RTN4Q9NQC3 1192 aaKnown RBP15.08■□□□□ 0
TCOF1-211ENST00000513346 DNAJC5BQ9UF47 199 aa15.08■□□□□ 0
TCOF1-211ENST00000513346 TSPY4P0CV99 314 aa15.07■□□□□ 0
TCOF1-211ENST00000513346 TSPY10P0CW01 314 aa15.07■□□□□ 0
TCOF1-211ENST00000513346 TRHP20396 242 aaPredicted RBP15.07■□□□□ 0
TCOF1-211ENST00000513346 STAG3Q9UJ98 1225 aa15.05■□□□□ 0
TCOF1-211ENST00000513346 ABCC8Q09428 1581 aa15.05■□□□□ -0
TCOF1-211ENST00000513346 PPM1GO15355 546 aaPredicted RBP15.05■□□□□ -0
TCOF1-211ENST00000513346 PLEKHD1A6NEE1 506 aa15.04■□□□□ -0
TCOF1-211ENST00000513346 NEFMP07197 916 aa15.04■□□□□ -0
TCOF1-211ENST00000513346 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.03■□□□□ -03e-8■■■■□ 20.9
TCOF1-211ENST00000513346 DDRGK1Q96HY6 314 aa15.03■□□□□ -0
TCOF1-211ENST00000513346 WIZO95785 1651 aa15.02■□□□□ -0
TCOF1-211ENST00000513346 CADPSQ9ULU8 1353 aa15.02■□□□□ -0
TCOF1-211ENST00000513346 SLC24A1O60721 1099 aa14.99□□□□□ -0.01
TCOF1-211ENST00000513346 CCER2I3L3R5 266 aa14.99□□□□□ -0.01
TCOF1-211ENST00000513346 CANXP27824 592 aaKnown RBP14.99□□□□□ -0.01
TCOF1-211ENST00000513346 RRP7BPQ9NSQ0 103 aa14.98□□□□□ -0.01
TCOF1-211ENST00000513346 TMC1Q8TDI8 760 aa14.98□□□□□ -0.01
TCOF1-211ENST00000513346 ERICH6BQ5W0A0 696 aa14.98□□□□□ -0.01
TCOF1-211ENST00000513346 ANP32BQ92688 251 aaKnown RBP14.98□□□□□ -0.01
TCOF1-211ENST00000513346 ATAD2BQ9ULI0 1458 aa14.97□□□□□ -0.01
TCOF1-211ENST00000513346 TDRD9Q8NDG6 1382 aaKnown RBP14.96□□□□□ -0.02
TCOF1-211ENST00000513346 B4GALNT3Q6L9W6 998 aa14.96□□□□□ -0.02
TCOF1-211ENST00000513346 UPF2Q9HAU5 1272 aaKnown RBP14.96□□□□□ -0.02
TCOF1-211ENST00000513346 LAS1LQ9Y4W2 734 aaKnown RBP14.94□□□□□ -0.02
TCOF1-211ENST00000513346 CUX2O14529 1486 aa14.94□□□□□ -0.02
TCOF1-211ENST00000513346 EIF4G2P78344 907 aaKnown RBP eCLIP14.93□□□□□ -0.02
TCOF1-211ENST00000513346 TOP2AP11388 1531 aaKnown RBP14.93□□□□□ -0.02
TCOF1-211ENST00000513346 CARMIL1Q5VZK9 1371 aa14.92□□□□□ -0.02
TCOF1-211ENST00000513346 SALL2Q9Y467 1007 aaPredicted RBP14.92□□□□□ -0.02
TCOF1-211ENST00000513346 SENP3Q9H4L4 574 aaPredicted RBP14.9□□□□□ -0.02
TCOF1-211ENST00000513346 ARXQ96QS3 562 aa14.9□□□□□ -0.02
TCOF1-211ENST00000513346 KDM2AQ9Y2K7 1162 aa14.89□□□□□ -0.03
TCOF1-211ENST00000513346 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.86□□□□□ -0.03
TCOF1-211ENST00000513346 SIN3AQ96ST3 1273 aa14.85□□□□□ -0.03
TCOF1-211ENST00000513346 FANCIQ9NVI1 1328 aa14.85□□□□□ -0.03
TCOF1-211ENST00000513346 VPS8Q8N3P4 1428 aa14.85□□□□□ -0.03
TCOF1-211ENST00000513346 TIMELESSQ9UNS1 1208 aa14.84□□□□□ -0.03
TCOF1-211ENST00000513346 CARMIL2Q6F5E8 1435 aa14.83□□□□□ -0.04
TCOF1-211ENST00000513346 ARID4BQ4LE39 1312 aaPredicted RBP14.83□□□□□ -0.04
TCOF1-211ENST00000513346 CCNB3Q8WWL7 1395 aa14.82□□□□□ -0.04
TCOF1-211ENST00000513346 HSP90AA1P07900 732 aaKnown RBP14.82□□□□□ -0.04
TCOF1-211ENST00000513346 BECN1Q14457 450 aa14.82□□□□□ -0.04
TCOF1-211ENST00000513346 KANK4Q5T7N3 995 aaPredicted RBP14.82□□□□□ -0.04
TCOF1-211ENST00000513346 CFDP1Q9UEE9 299 aaPredicted RBP14.82□□□□□ -0.04
TCOF1-211ENST00000513346 SMARCA4P51532 1647 aa14.81□□□□□ -0.04
TCOF1-211ENST00000513346 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.81□□□□□ -0.04
TCOF1-211ENST00000513346 FHAD1B1AJZ9 1412 aa14.8□□□□□ -0.04
TCOF1-211ENST00000513346 NAP1L5Q96NT1 182 aaPredicted RBP14.79□□□□□ -0.04
TCOF1-211ENST00000513346 CYB5RLQ6IPT4 315 aa14.78□□□□□ -0.04
TCOF1-211ENST00000513346 IPO9Q96P70 1041 aaKnown RBP14.78□□□□□ -0.04
TCOF1-211ENST00000513346 NCAPD3P42695 1498 aa14.78□□□□□ -0.04
TCOF1-211ENST00000513346 TRIM44Q96DX7 344 aaPredicted RBP14.78□□□□□ -0.04
TCOF1-211ENST00000513346 OSCARQ8IYS5 282 aa14.75□□□□□ -0.05
TCOF1-211ENST00000513346 EIF4G1Q04637 1599 aaKnown RBP14.75□□□□□ -0.05
TCOF1-211ENST00000513346 RUSC2Q8N2Y8 1516 aa14.75□□□□□ -0.05
TCOF1-211ENST00000513346 FANCD2Q9BXW9 1451 aa14.75□□□□□ -0.05
TCOF1-211ENST00000513346 RGL3Q3MIN7 710 aa14.72□□□□□ -0.05
TCOF1-211ENST00000513346 RAPGEF2Q9Y4G8 1499 aa14.71□□□□□ -0.06
TCOF1-211ENST00000513346 PPP1R15AO75807 674 aaPredicted RBP14.69□□□□□ -0.06
TCOF1-211ENST00000513346 SENP3-EIF4A1A0A087X0R7 540 aa14.69□□□□□ -0.06
TCOF1-211ENST00000513346 WDR43Q15061 677 aaKnown RBP eCLIP14.68□□□□□ -0.067e-6■■■■■ 27.3
TCOF1-211ENST00000513346 USP35Q9P2H5 1018 aa14.68□□□□□ -0.06
TCOF1-211ENST00000513346 MLECQ14165 292 aa14.67□□□□□ -0.06
TCOF1-211ENST00000513346 L1TD1Q5T7N2 865 aaKnown RBP14.67□□□□□ -0.06
TCOF1-211ENST00000513346 TCERG1O14776 1098 aaKnown RBP14.67□□□□□ -0.06
TCOF1-211ENST00000513346 PRKCSHP14314 528 aaPredicted RBP14.65□□□□□ -0.06
TCOF1-211ENST00000513346 DHX57Q6P158 1386 aaKnown RBP14.64□□□□□ -0.07
TCOF1-211ENST00000513346 SETD5Q9C0A6 1442 aa14.64□□□□□ -0.07
TCOF1-211ENST00000513346 NESP48681 1621 aa14.64□□□□□ -0.07
TCOF1-211ENST00000513346 JPH4Q96JJ6 628 aa14.63□□□□□ -0.07
TCOF1-211ENST00000513346 TNNT2P45379 298 aaPredicted RBP14.62□□□□□ -0.07
TCOF1-211ENST00000513346 ARHGAP35Q9NRY4 1499 aa14.61□□□□□ -0.07
TCOF1-211ENST00000513346 RGS3P49796 1198 aa14.6□□□□□ -0.07
TCOF1-211ENST00000513346 RAB3GAP2Q9H2M9 1393 aa14.6□□□□□ -0.07
TCOF1-211ENST00000513346 CC2D2AQ9P2K1 1620 aa14.6□□□□□ -0.07
TCOF1-211ENST00000513346 PLEKHG5O94827 1062 aa14.59□□□□□ -0.07
TCOF1-211ENST00000513346 RSPH6AQ9H0K4 717 aa14.59□□□□□ -0.07
TCOF1-211ENST00000513346 GOLGA6L22H0YM25 854 aa14.59□□□□□ -0.07
TCOF1-211ENST00000513346 HSPA5P11021 654 aaKnown RBP14.58□□□□□ -0.08
TCOF1-211ENST00000513346 CARD11Q9BXL7 1154 aa14.58□□□□□ -0.08
TCOF1-211ENST00000513346 FHOD3Q2V2M9 1422 aa14.58□□□□□ -0.08
TCOF1-211ENST00000513346 FMN1Q68DA7 1419 aa14.58□□□□□ -0.08
TCOF1-211ENST00000513346 PNNQ9H307 717 aaKnown RBP14.57□□□□□ -0.08
TCOF1-211ENST00000513346 EFCAB2Q5VUJ9 269 aa14.57□□□□□ -0.08
TCOF1-211ENST00000513346 C14orf37Q86TY3 774 aa14.56□□□□□ -0.08
TCOF1-211ENST00000513346 ANO8Q9HCE9 1232 aaPredicted RBP14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms