RNA–Protein interactions for RNA: ENST00000512881.5

RFC1-215, Transcript of replication factor C subunit 1, humanhuman

TSL 3

Gene RFC1, Length 537 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-215ENST00000512881 PHF12Q96QT6 1004 aa13.99□□□□□ -0.17
RFC1-215ENST00000512881 CLCN6P51797 869 aa13.98□□□□□ -0.17
RFC1-215ENST00000512881 VASPP50552 380 aaPredicted RBP13.96□□□□□ -0.17
RFC1-215ENST00000512881 RASEFQ8IZ41 740 aa13.96□□□□□ -0.17
RFC1-215ENST00000512881 ZBTB47Q9UFB7 747 aaPredicted RBP13.95□□□□□ -0.18
RFC1-215ENST00000512881 TSPYL2Q9H2G4 693 aaPredicted RBP13.94□□□□□ -0.18
RFC1-215ENST00000512881 DCAF1Q9Y4B6 1507 aa13.94□□□□□ -0.18
RFC1-215ENST00000512881 CCDC61Q9Y6R9 512 aa13.92□□□□□ -0.18
RFC1-215ENST00000512881 GALR2O43603 387 aaPredicted RBP13.91□□□□□ -0.18
RFC1-215ENST00000512881 NUBP1P53384 320 aa13.91□□□□□ -0.18
RFC1-215ENST00000512881 BICRAQ9NZM4 1560 aa13.9□□□□□ -0.18
RFC1-215ENST00000512881 POTEIP0CG38 1075 aa13.87□□□□□ -0.19
RFC1-215ENST00000512881 UNC13AQ9UPW8 1703 aa13.87□□□□□ -0.19
RFC1-215ENST00000512881 MS4A3Q96HJ5 214 aa13.82□□□□□ -0.2
RFC1-215ENST00000512881 KIF12Q96FN5 646 aa13.78□□□□□ -0.2
RFC1-215ENST00000512881 FAM212AQ96EL1 285 aa13.77□□□□□ -0.21
RFC1-215ENST00000512881 DCBLD2Q96PD2 775 aa13.77□□□□□ -0.21
RFC1-215ENST00000512881 IFNLR1Q8IU57 520 aaPredicted RBP13.74□□□□□ -0.21
RFC1-215ENST00000512881 SCRIBQ14160 1630 aa13.74□□□□□ -0.21
RFC1-215ENST00000512881 KLHL34Q8N239 644 aa13.73□□□□□ -0.21
RFC1-215ENST00000512881 MAP3K13O43283 966 aa13.72□□□□□ -0.21
RFC1-215ENST00000512881 SHROOM4Q9ULL8 1493 aa13.72□□□□□ -0.21
RFC1-215ENST00000512881 TRPC6Q9Y210 931 aa13.65□□□□□ -0.22
RFC1-215ENST00000512881 DCAF8Q5TAQ9 597 aa13.64□□□□□ -0.23
RFC1-215ENST00000512881 ASTLQ6HA08 431 aaPredicted RBP13.64□□□□□ -0.23
RFC1-215ENST00000512881 ATMINO43313 823 aaPredicted RBP13.61□□□□□ -0.23
RFC1-215ENST00000512881 PELP1Q8IZL8 1130 aaKnown RBP13.61□□□□□ -0.23
RFC1-215ENST00000512881 SPOCK2Q92563 424 aa13.61□□□□□ -0.23
RFC1-215ENST00000512881 SGIP1Q9BQI5 828 aa13.61□□□□□ -0.23
RFC1-215ENST00000512881 PCDHB13Q9Y5F0 798 aa13.61□□□□□ -0.23
RFC1-215ENST00000512881 PYGBP11216 843 aa13.58□□□□□ -0.24
RFC1-215ENST00000512881 BMP2KQ9NSY1 1161 aaPredicted RBP13.58□□□□□ -0.24
RFC1-215ENST00000512881 CECR2Q9BXF3 1484 aa13.58□□□□□ -0.24
RFC1-215ENST00000512881 GSE1Q14687 1217 aa13.57□□□□□ -0.24
RFC1-215ENST00000512881 IFNL1Q8IU54 200 aa13.57□□□□□ -0.24
RFC1-215ENST00000512881 LHX8Q68G74 356 aa13.56□□□□□ -0.24
RFC1-215ENST00000512881 EIF4G1Q04637 1599 aaKnown RBP13.56□□□□□ -0.24
RFC1-215ENST00000512881 CC2D2AQ9P2K1 1620 aa13.56□□□□□ -0.24
RFC1-215ENST00000512881 TIE1P35590 1138 aa13.55□□□□□ -0.24
RFC1-215ENST00000512881 ATN1P54259 1190 aaPredicted RBP13.55□□□□□ -0.24
RFC1-215ENST00000512881 TTLL13PA6NNM8 815 aa13.51□□□□□ -0.25
RFC1-215ENST00000512881 METRNQ9UJH8 293 aa13.48□□□□□ -0.25
RFC1-215ENST00000512881 SLC39A7Q92504 469 aa13.46□□□□□ -0.25
RFC1-215ENST00000512881 CHRM1P11229 460 aaPredicted RBP13.45□□□□□ -0.26
RFC1-215ENST00000512881 CIZ1Q9ULV3 898 aaPredicted RBP13.45□□□□□ -0.26
RFC1-215ENST00000512881 PCDHB8Q9UN66 801 aa13.45□□□□□ -0.26
RFC1-215ENST00000512881 C7P10643 843 aa13.43□□□□□ -0.26
RFC1-215ENST00000512881 POTEB2H3BUK9 544 aa13.42□□□□□ -0.26
RFC1-215ENST00000512881 TRIM35Q9UPQ4 493 aa13.41□□□□□ -0.26
RFC1-215ENST00000512881 TMEM106CQ9BVX2 250 aa13.4□□□□□ -0.26
RFC1-215ENST00000512881 ZNF467Q7Z7K2 595 aaPredicted RBP13.39□□□□□ -0.27
RFC1-215ENST00000512881 POTEFA5A3E0 1075 aa13.37□□□□□ -0.27
RFC1-215ENST00000512881 IER5LQ5T953 404 aa13.32□□□□□ -0.28
RFC1-215ENST00000512881 POTEJP0CG39 1038 aa13.31□□□□□ -0.28
RFC1-215ENST00000512881 TRIM41Q8WV44 630 aa13.31□□□□□ -0.28
RFC1-215ENST00000512881 COLQQ9Y215 455 aaPredicted RBP13.3□□□□□ -0.28
RFC1-215ENST00000512881 OTUD5Q96G74 571 aa13.29□□□□□ -0.28
RFC1-215ENST00000512881 PSEN1P49768 467 aa13.26□□□□□ -0.29
RFC1-215ENST00000512881 PDAP1Q13442 181 aaKnown RBP13.25□□□□□ -0.29
RFC1-215ENST00000512881 SEC24BO95487 1268 aa13.23□□□□□ -0.29
RFC1-215ENST00000512881 IRX5P78411 483 aaPredicted RBP13.23□□□□□ -0.29
RFC1-215ENST00000512881 RNF25Q96BH1 459 aaPredicted RBP13.23□□□□□ -0.29
RFC1-215ENST00000512881 NCAPD3P42695 1498 aa13.22□□□□□ -0.29
RFC1-215ENST00000512881 ATAD2BQ9ULI0 1458 aa13.18□□□□□ -0.3
RFC1-215ENST00000512881 PLCG2P16885 1265 aa13.16□□□□□ -0.3
RFC1-215ENST00000512881 RIOK3O14730 519 aaKnown RBP13.14□□□□□ -0.31
RFC1-215ENST00000512881 MAMSTRQ6ZN01 415 aa13.14□□□□□ -0.31
RFC1-215ENST00000512881 GOLGA2Q08379 1002 aa13.12□□□□□ -0.31
RFC1-215ENST00000512881 PKD2Q13563 968 aa13.12□□□□□ -0.31
RFC1-215ENST00000512881 OCEL1Q9H607 264 aa13.12□□□□□ -0.31
RFC1-215ENST00000512881 SMARCA4P51532 1647 aa13.11□□□□□ -0.31
RFC1-215ENST00000512881 PDCD7Q8N8D1 485 aaKnown RBP13.11□□□□□ -0.31
RFC1-215ENST00000512881 CABP2Q9NPB3 220 aa13.11□□□□□ -0.31
RFC1-215ENST00000512881 MKRN3Q13064 507 aaKnown RBP13.1□□□□□ -0.31
RFC1-215ENST00000512881 SCUBE2Q9NQ36 999 aa13.1□□□□□ -0.31
RFC1-215ENST00000512881 SMARCA2P51531 1590 aa13.1□□□□□ -0.31
RFC1-215ENST00000512881 BAZ1AQ9NRL2 1556 aaPredicted RBP13.08□□□□□ -0.32
RFC1-215ENST00000512881 ILDR1Q86SU0 546 aaPredicted RBP13.07□□□□□ -0.32
RFC1-215ENST00000512881 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.06□□□□□ -0.32
RFC1-215ENST00000512881 VGFO15240 615 aaPredicted RBP13.06□□□□□ -0.32
RFC1-215ENST00000512881 ECM2O94769 699 aaPredicted RBP13.06□□□□□ -0.32
RFC1-215ENST00000512881 ZFP91Q96JP5 570 aaPredicted RBP13.06□□□□□ -0.32
RFC1-215ENST00000512881 HMGXB3Q12766 1538 aa13.05□□□□□ -0.32
RFC1-215ENST00000512881 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.04□□□□□ -0.321e-6■■■■□ 24.4
RFC1-215ENST00000512881 BAZ1BQ9UIG0 1483 aaKnown RBP13.04□□□□□ -0.32
RFC1-215ENST00000512881 MROH2BQ7Z745 1585 aa13.02□□□□□ -0.33
RFC1-215ENST00000512881 ERCC6Q03468 1493 aa13.01□□□□□ -0.33
RFC1-215ENST00000512881 RGL2O15211 777 aa13□□□□□ -0.33
RFC1-215ENST00000512881 EFCAB3Q8N7B9 438 aa12.99□□□□□ -0.33
RFC1-215ENST00000512881 PEG3Q9GZU2 1588 aa12.98□□□□□ -0.33
RFC1-215ENST00000512881 NESP48681 1621 aa12.96□□□□□ -0.33
RFC1-215ENST00000512881 DNAJC5Q9H3Z4 198 aa12.95□□□□□ -0.34
RFC1-215ENST00000512881 CUX2O14529 1486 aa12.94□□□□□ -0.34
RFC1-215ENST00000512881 DPY19L2Q6NUT2 758 aa12.94□□□□□ -0.34
RFC1-215ENST00000512881 BCL11BQ9C0K0 894 aaPredicted RBP12.93□□□□□ -0.34
RFC1-215ENST00000512881 TAOK2Q9UL54 1235 aa12.92□□□□□ -0.34
RFC1-215ENST00000512881 SLAIN1Q8ND83 568 aa12.91□□□□□ -0.34
RFC1-215ENST00000512881 L3MBTL3Q96JM7 780 aaPredicted RBP12.9□□□□□ -0.34
RFC1-215ENST00000512881 LCE2DQ5TA82 110 aaPredicted RBP12.88□□□□□ -0.35
RFC1-215ENST00000512881 STK24Q9Y6E0 443 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms