RNA–Protein interactions for RNA: ENST00000508635.5

UBE2D3-226, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 4

Gene UBE2D3, Length 587 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-226ENST00000508635 ASTLQ6HA08 431 aaPredicted RBP9.44□□□□□ -0.9
UBE2D3-226ENST00000508635 STAG3Q9UJ98 1225 aa9.44□□□□□ -0.9
UBE2D3-226ENST00000508635 CREBZFQ9NS37 354 aa9.43□□□□□ -0.9
UBE2D3-226ENST00000508635 PHF12Q96QT6 1004 aa9.41□□□□□ -0.9
UBE2D3-226ENST00000508635 POTEJP0CG39 1038 aa9.39□□□□□ -0.91
UBE2D3-226ENST00000508635 ATMINO43313 823 aaPredicted RBP9.37□□□□□ -0.91
UBE2D3-226ENST00000508635 NPM1P06748 294 aaKnown RBP eCLIP9.37□□□□□ -0.91
UBE2D3-226ENST00000508635 FKBP8Q14318 412 aa9.36□□□□□ -0.91
UBE2D3-226ENST00000508635 CDAN1Q8IWY9 1227 aa9.36□□□□□ -0.91
UBE2D3-226ENST00000508635 SPDYE4A6NLX3 237 aa9.29□□□□□ -0.92
UBE2D3-226ENST00000508635 MS4A3Q96HJ5 214 aa9.28□□□□□ -0.92
UBE2D3-226ENST00000508635 ATN1P54259 1190 aaPredicted RBP9.2□□□□□ -0.94
UBE2D3-226ENST00000508635 MMRN1Q13201 1228 aa9.2□□□□□ -0.94
UBE2D3-226ENST00000508635 MNX1P50219 401 aaPredicted RBP9.17□□□□□ -0.94
UBE2D3-226ENST00000508635 SPNS2Q8IVW8 549 aa9.15□□□□□ -0.94
UBE2D3-226ENST00000508635 POTEFA5A3E0 1075 aa9.14□□□□□ -0.95
UBE2D3-226ENST00000508635 PROM2Q8N271 834 aa9.14□□□□□ -0.95
UBE2D3-226ENST00000508635 SEC24BO95487 1268 aa9.12□□□□□ -0.95
UBE2D3-226ENST00000508635 ST18O60284 1047 aa9.11□□□□□ -0.95
UBE2D3-226ENST00000508635 TIE1P35590 1138 aa9.11□□□□□ -0.95
UBE2D3-226ENST00000508635 TMEM121BQ9BXQ6 578 aaPredicted RBP9.09□□□□□ -0.95
UBE2D3-226ENST00000508635 BMP2KQ9NSY1 1161 aaPredicted RBP9.09□□□□□ -0.95
UBE2D3-226ENST00000508635 IER5LQ5T953 404 aa9.06□□□□□ -0.96
UBE2D3-226ENST00000508635 KIF12Q96FN5 646 aa9.06□□□□□ -0.96
UBE2D3-226ENST00000508635 CCDC61Q9Y6R9 512 aa9.06□□□□□ -0.96
UBE2D3-226ENST00000508635 SLAIN1Q8ND83 568 aa9.05□□□□□ -0.96
UBE2D3-226ENST00000508635 TSPYL2Q9H2G4 693 aaPredicted RBP9.04□□□□□ -0.96
UBE2D3-226ENST00000508635 COLQQ9Y215 455 aaPredicted RBP9.02□□□□□ -0.97
UBE2D3-226ENST00000508635 SNPHO15079 494 aa9□□□□□ -0.97
UBE2D3-226ENST00000508635 TTLL13PA6NNM8 815 aa8.97□□□□□ -0.97
UBE2D3-226ENST00000508635 FBXO3Q9UK99 471 aa8.95□□□□□ -0.98
UBE2D3-226ENST00000508635 TRPC6Q9Y210 931 aa8.94□□□□□ -0.98
UBE2D3-226ENST00000508635 MAP3K13O43283 966 aa8.93□□□□□ -0.98
UBE2D3-226ENST00000508635 TRIM35Q9UPQ4 493 aa8.92□□□□□ -0.98
UBE2D3-226ENST00000508635 SGIP1Q9BQI5 828 aa8.91□□□□□ -0.98
UBE2D3-226ENST00000508635 PLCG2P16885 1265 aa8.88□□□□□ -0.99
UBE2D3-226ENST00000508635 VASPP50552 380 aaPredicted RBP8.87□□□□□ -0.99
UBE2D3-226ENST00000508635 PLEKHG5O94827 1062 aa8.84□□□□□ -0.99
UBE2D3-226ENST00000508635 MARVELD3Q96A59 401 aa8.84□□□□□ -0.99
UBE2D3-226ENST00000508635 MIER1Q8N108 512 aa8.83□□□□□ -1
UBE2D3-226ENST00000508635 RASEFQ8IZ41 740 aa8.82□□□□□ -1
UBE2D3-226ENST00000508635 PLCD3Q8N3E9 789 aa8.82□□□□□ -1
UBE2D3-226ENST00000508635 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.82□□□□□ -1
UBE2D3-226ENST00000508635 EMP3P54852 163 aa8.79□□□□□ -1
UBE2D3-226ENST00000508635 PCDHB13Q9Y5F0 798 aa8.79□□□□□ -1
UBE2D3-226ENST00000508635 IRX5P78411 483 aaPredicted RBP8.77□□□□□ -1.01
UBE2D3-226ENST00000508635 KRTAP3-3Q9BYR6 98 aa8.77□□□□□ -1.01
UBE2D3-226ENST00000508635 KRTAP3-2Q9BYR7 98 aa8.77□□□□□ -1.01
UBE2D3-226ENST00000508635 IFNLR1Q8IU57 520 aaPredicted RBP8.76□□□□□ -1.01
UBE2D3-226ENST00000508635 OCEL1Q9H607 264 aa8.76□□□□□ -1.01
UBE2D3-226ENST00000508635 KLHL34Q8N239 644 aa8.75□□□□□ -1.01
UBE2D3-226ENST00000508635 NUBP1P53384 320 aa8.74□□□□□ -1.01
UBE2D3-226ENST00000508635 TMEM106CQ9BVX2 250 aa8.74□□□□□ -1.01
UBE2D3-226ENST00000508635 HS3ST6Q96QI5 342 aa8.73□□□□□ -1.01
UBE2D3-226ENST00000508635 FAM205CA6NFA0 338 aa8.68□□□□□ -1.02
UBE2D3-226ENST00000508635 IFNL1Q8IU54 200 aa8.67□□□□□ -1.02
UBE2D3-226ENST00000508635 C3orf67Q6ZVT6 689 aa8.65□□□□□ -1.02
UBE2D3-226ENST00000508635 RNF166Q96A37 237 aaPredicted RBP8.65□□□□□ -1.02
UBE2D3-226ENST00000508635 POTEB3A0JP26 581 aa8.64□□□□□ -1.03
UBE2D3-226ENST00000508635 POTEBQ6S5H4 581 aa8.64□□□□□ -1.03
UBE2D3-226ENST00000508635 ZBTB47Q9UFB7 747 aaPredicted RBP8.64□□□□□ -1.03
UBE2D3-226ENST00000508635 SPOCK2Q92563 424 aa8.63□□□□□ -1.03
UBE2D3-226ENST00000508635 L3MBTL3Q96JM7 780 aaPredicted RBP8.62□□□□□ -1.03
UBE2D3-226ENST00000508635 RTN4Q9NQC3 1192 aaKnown RBP8.58□□□□□ -1.04
UBE2D3-226ENST00000508635 FAM212AQ96EL1 285 aa8.56□□□□□ -1.04
UBE2D3-226ENST00000508635 MYT1LQ9UL68 1186 aa8.56□□□□□ -1.04
UBE2D3-226ENST00000508635 AMER1Q5JTC6 1135 aaPredicted RBP8.55□□□□□ -1.04
UBE2D3-226ENST00000508635 PTGER2P43116 358 aa8.54□□□□□ -1.04
UBE2D3-226ENST00000508635 CIZ1Q9ULV3 898 aaPredicted RBP8.54□□□□□ -1.04
UBE2D3-226ENST00000508635 DCAF8Q5TAQ9 597 aa8.53□□□□□ -1.04
UBE2D3-226ENST00000508635 NISCHQ9Y2I1 1504 aa8.5□□□□□ -1.05
UBE2D3-226ENST00000508635 PDCD7Q8N8D1 485 aaKnown RBP8.5□□□□□ -1.05
UBE2D3-226ENST00000508635 HOXB1P14653 301 aaPredicted RBP8.49□□□□□ -1.05
UBE2D3-226ENST00000508635 ERBB3P21860 1342 aa8.49□□□□□ -1.05
UBE2D3-226ENST00000508635 PYGBP11216 843 aa8.48□□□□□ -1.05
UBE2D3-226ENST00000508635 PKD2Q13563 968 aa8.47□□□□□ -1.05
UBE2D3-226ENST00000508635 GOLGA2Q08379 1002 aa8.46□□□□□ -1.06
UBE2D3-226ENST00000508635 MKRN3Q13064 507 aaKnown RBP8.46□□□□□ -1.06
UBE2D3-226ENST00000508635 GSE1Q14687 1217 aa8.46□□□□□ -1.06
UBE2D3-226ENST00000508635 ZNF710Q8N1W2 664 aa8.46□□□□□ -1.06
UBE2D3-226ENST00000508635 PCDHB8Q9UN66 801 aa8.46□□□□□ -1.06
UBE2D3-226ENST00000508635 ECM2O94769 699 aaPredicted RBP8.44□□□□□ -1.06
UBE2D3-226ENST00000508635 DOK7Q18PE1 504 aa8.43□□□□□ -1.06
UBE2D3-226ENST00000508635 HOXB3P14651 431 aaPredicted RBP8.42□□□□□ -1.06
UBE2D3-226ENST00000508635 RIMBP2O15034 1052 aa8.41□□□□□ -1.06
UBE2D3-226ENST00000508635 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.39□□□□□ -1.07
UBE2D3-226ENST00000508635 G3V3G9 751 aa8.38□□□□□ -1.07
UBE2D3-226ENST00000508635 ZNF687Q8N1G0 1237 aa8.38□□□□□ -1.07
UBE2D3-226ENST00000508635 VARS2Q5ST30 1063 aaKnown RBP8.37□□□□□ -1.07
UBE2D3-226ENST00000508635 RGL2O15211 777 aa8.36□□□□□ -1.07
UBE2D3-226ENST00000508635 DCAF8L2P0C7V8 631 aa8.36□□□□□ -1.07
UBE2D3-226ENST00000508635 CHRM1P11229 460 aaPredicted RBP8.36□□□□□ -1.07
UBE2D3-226ENST00000508635 ZNF467Q7Z7K2 595 aaPredicted RBP8.35□□□□□ -1.07
UBE2D3-226ENST00000508635 TRIM41Q8WV44 630 aa8.35□□□□□ -1.07
UBE2D3-226ENST00000508635 ILDR1Q86SU0 546 aaPredicted RBP8.33□□□□□ -1.08
UBE2D3-226ENST00000508635 ZSWIM6Q9HCJ5 1215 aa8.33□□□□□ -1.08
UBE2D3-226ENST00000508635 RNF25Q96BH1 459 aaPredicted RBP8.31□□□□□ -1.08
UBE2D3-226ENST00000508635 PLA2G2EQ9NZK7 142 aa8.31□□□□□ -1.08
UBE2D3-226ENST00000508635 BOLA1Q9Y3E2 137 aa8.3□□□□□ -1.08
UBE2D3-226ENST00000508635 RIOK3O14730 519 aaKnown RBP8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms