RNA–Protein interactions for RNA: ENST00000507215.5

NR1I3-224, Transcript of nuclear receptor subfamily 1 group I member 3, humanhuman

TSL 1 (best)

Gene NR1I3, Length 620 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR1I3-224ENST00000507215 NUBP1P53384 320 aa13.94□□□□□ -0.18
NR1I3-224ENST00000507215 ZBTB47Q9UFB7 747 aaPredicted RBP13.93□□□□□ -0.18
NR1I3-224ENST00000507215 SCRIBQ14160 1630 aa13.9□□□□□ -0.18
NR1I3-224ENST00000507215 RTN4Q9NQC3 1192 aaKnown RBP13.89□□□□□ -0.19
NR1I3-224ENST00000507215 RASEFQ8IZ41 740 aa13.87□□□□□ -0.19
NR1I3-224ENST00000507215 DNAJC5Q9H3Z4 198 aa13.87□□□□□ -0.19
NR1I3-224ENST00000507215 NPM1P06748 294 aaKnown RBP eCLIP13.86□□□□□ -0.19
NR1I3-224ENST00000507215 POTEHQ6S545 545 aa13.81□□□□□ -0.2
NR1I3-224ENST00000507215 PKD2Q13563 968 aa13.78□□□□□ -0.2
NR1I3-224ENST00000507215 AMER1Q5JTC6 1135 aaPredicted RBP13.78□□□□□ -0.2
NR1I3-224ENST00000507215 TSPYL2Q9H2G4 693 aaPredicted RBP13.74□□□□□ -0.21
NR1I3-224ENST00000507215 C19orf67A6NJJ6 358 aa13.73□□□□□ -0.21
NR1I3-224ENST00000507215 DCAF8Q5TAQ9 597 aa13.73□□□□□ -0.21
NR1I3-224ENST00000507215 CIZ1Q9ULV3 898 aaPredicted RBP13.73□□□□□ -0.21
NR1I3-224ENST00000507215 EVX2Q03828 476 aa13.7□□□□□ -0.22
NR1I3-224ENST00000507215 CD44P16070 742 aaKnown RBP13.69□□□□□ -0.22
NR1I3-224ENST00000507215 FAM212AQ96EL1 285 aa13.69□□□□□ -0.22
NR1I3-224ENST00000507215 GSE1Q14687 1217 aa13.66□□□□□ -0.22
NR1I3-224ENST00000507215 CUX2O14529 1486 aa13.66□□□□□ -0.22
NR1I3-224ENST00000507215 HAX1O00165 279 aa13.65□□□□□ -0.22
NR1I3-224ENST00000507215 CCDC61Q9Y6R9 512 aa13.65□□□□□ -0.22
NR1I3-224ENST00000507215 ZRANB1Q9UGI0 708 aa13.63□□□□□ -0.23
NR1I3-224ENST00000507215 ECM2O94769 699 aaPredicted RBP13.59□□□□□ -0.23
NR1I3-224ENST00000507215 PYGBP11216 843 aa13.59□□□□□ -0.23
NR1I3-224ENST00000507215 PAK3O75914 559 aaPredicted RBP13.57□□□□□ -0.24
NR1I3-224ENST00000507215 PHF12Q96QT6 1004 aa13.57□□□□□ -0.24
NR1I3-224ENST00000507215 RGL2O15211 777 aa13.54□□□□□ -0.24
NR1I3-224ENST00000507215 CHRM1P11229 460 aaPredicted RBP13.53□□□□□ -0.24
NR1I3-224ENST00000507215 ZNF579Q8NAF0 562 aaKnown RBP13.53□□□□□ -0.24
NR1I3-224ENST00000507215 RNF25Q96BH1 459 aaPredicted RBP13.53□□□□□ -0.24
NR1I3-224ENST00000507215 ERCC6Q03468 1493 aa13.52□□□□□ -0.25
NR1I3-224ENST00000507215 NCAPD3P42695 1498 aa13.51□□□□□ -0.25
NR1I3-224ENST00000507215 TRIM41Q8WV44 630 aa13.51□□□□□ -0.25
NR1I3-224ENST00000507215 KIF12Q96FN5 646 aa13.51□□□□□ -0.25
NR1I3-224ENST00000507215 MAP3K13O43283 966 aa13.48□□□□□ -0.25
NR1I3-224ENST00000507215 PCDHB8Q9UN66 801 aa13.42□□□□□ -0.26
NR1I3-224ENST00000507215 PCDHB13Q9Y5F0 798 aa13.42□□□□□ -0.26
NR1I3-224ENST00000507215 IFNL1Q8IU54 200 aa13.41□□□□□ -0.26
NR1I3-224ENST00000507215 SMARCA2P51531 1590 aa13.41□□□□□ -0.26
NR1I3-224ENST00000507215 HMGXB3Q12766 1538 aa13.4□□□□□ -0.26
NR1I3-224ENST00000507215 MS4A3Q96HJ5 214 aa13.4□□□□□ -0.26
NR1I3-224ENST00000507215 ATAD2BQ9ULI0 1458 aa13.38□□□□□ -0.27
NR1I3-224ENST00000507215 RIOK3O14730 519 aaKnown RBP13.37□□□□□ -0.27
NR1I3-224ENST00000507215 TRPC6Q9Y210 931 aa13.37□□□□□ -0.27
NR1I3-224ENST00000507215 GALR2O43603 387 aaPredicted RBP13.36□□□□□ -0.27
NR1I3-224ENST00000507215 SGIP1Q9BQI5 828 aa13.36□□□□□ -0.27
NR1I3-224ENST00000507215 GABBR2O75899 941 aa13.33□□□□□ -0.28
NR1I3-224ENST00000507215 ZNF467Q7Z7K2 595 aaPredicted RBP13.32□□□□□ -0.28
NR1I3-224ENST00000507215 SP7Q8TDD2 431 aaPredicted RBP13.3□□□□□ -0.28
NR1I3-224ENST00000507215 SMARCA4P51532 1647 aa13.3□□□□□ -0.28
NR1I3-224ENST00000507215 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.27□□□□□ -0.29
NR1I3-224ENST00000507215 VGFO15240 615 aaPredicted RBP13.27□□□□□ -0.29
NR1I3-224ENST00000507215 ZFP91Q96JP5 570 aaPredicted RBP13.27□□□□□ -0.29
NR1I3-224ENST00000507215 LAMC3Q9Y6N6 1575 aa13.27□□□□□ -0.29
NR1I3-224ENST00000507215 BAZ1BQ9UIG0 1483 aaKnown RBP13.26□□□□□ -0.29
NR1I3-224ENST00000507215 BAZ1AQ9NRL2 1556 aaPredicted RBP13.25□□□□□ -0.29
NR1I3-224ENST00000507215 PSEN1P49768 467 aa13.25□□□□□ -0.29
NR1I3-224ENST00000507215 PDAP1Q13442 181 aaKnown RBP13.24□□□□□ -0.29
NR1I3-224ENST00000507215 THOC2Q8NI27 1593 aaKnown RBP13.24□□□□□ -0.29
NR1I3-224ENST00000507215 PEG3Q9GZU2 1588 aa13.24□□□□□ -0.29
NR1I3-224ENST00000507215 NESP48681 1621 aa13.23□□□□□ -0.29
NR1I3-224ENST00000507215 CHGAP10645 457 aaKnown RBP13.22□□□□□ -0.29
NR1I3-224ENST00000507215 CLCN6P51797 869 aa13.22□□□□□ -0.29
NR1I3-224ENST00000507215 PDS5BQ9NTI5 1447 aa13.21□□□□□ -0.3
NR1I3-224ENST00000507215 BMP2KQ9NSY1 1161 aaPredicted RBP13.19□□□□□ -0.3
NR1I3-224ENST00000507215 HS6ST3Q8IZP7 471 aa13.18□□□□□ -0.3
NR1I3-224ENST00000507215 BCL11BQ9C0K0 894 aaPredicted RBP13.18□□□□□ -0.3
NR1I3-224ENST00000507215 STK25O00506 426 aa13.17□□□□□ -0.3
NR1I3-224ENST00000507215 TIE1P35590 1138 aa13.16□□□□□ -0.3
NR1I3-224ENST00000507215 TMEM106CQ9BVX2 250 aa13.16□□□□□ -0.3
NR1I3-224ENST00000507215 TTLL13PA6NNM8 815 aa13.15□□□□□ -0.3
NR1I3-224ENST00000507215 TAOK2Q9UL54 1235 aa13.15□□□□□ -0.3
NR1I3-224ENST00000507215 POTEIP0CG38 1075 aa13.14□□□□□ -0.31
NR1I3-224ENST00000507215 STK24Q9Y6E0 443 aa13.14□□□□□ -0.31
NR1I3-224ENST00000507215 ATMINO43313 823 aaPredicted RBP13.11□□□□□ -0.31
NR1I3-224ENST00000507215 ATN1P54259 1190 aaPredicted RBP13.11□□□□□ -0.31
NR1I3-224ENST00000507215 NKX1-1Q15270 411 aaPredicted RBP13.1□□□□□ -0.31
NR1I3-224ENST00000507215 ASTLQ6HA08 431 aaPredicted RBP13.1□□□□□ -0.31
NR1I3-224ENST00000507215 KIF21AQ7Z4S6 1674 aa13.09□□□□□ -0.31
NR1I3-224ENST00000507215 PELP1Q8IZL8 1130 aaKnown RBP13.09□□□□□ -0.31
NR1I3-224ENST00000507215 CABP2Q9NPB3 220 aa13.09□□□□□ -0.31
NR1I3-224ENST00000507215 CADPSQ9ULU8 1353 aa13.07□□□□□ -0.32
NR1I3-224ENST00000507215 MRC2Q9UBG0 1479 aa13.06□□□□□ -0.32
NR1I3-224ENST00000507215 TRIM35Q9UPQ4 493 aa13.06□□□□□ -0.32
NR1I3-224ENST00000507215 EFCAB3Q8N7B9 438 aa13.05□□□□□ -0.32
NR1I3-224ENST00000507215 DCBLD2Q96PD2 775 aa13.05□□□□□ -0.32
NR1I3-224ENST00000507215 WDR62O43379 1518 aa13.04□□□□□ -0.32
NR1I3-224ENST00000507215 BBXQ8WY36 941 aaPredicted RBP13.04□□□□□ -0.32
NR1I3-224ENST00000507215 MROH2BQ7Z745 1585 aa13.01□□□□□ -0.33
NR1I3-224ENST00000507215 MFRPQ9BY79 579 aa12.97□□□□□ -0.33
NR1I3-224ENST00000507215 CEP164Q9UPV0 1460 aa12.96□□□□□ -0.34
NR1I3-224ENST00000507215 PHF8Q9UPP1 1060 aa12.95□□□□□ -0.34
NR1I3-224ENST00000507215 GTPBP6O43824 516 aaPredicted RBP12.93□□□□□ -0.34
NR1I3-224ENST00000507215 GOLGA2Q08379 1002 aa12.93□□□□□ -0.34
NR1I3-224ENST00000507215 MKRN3Q13064 507 aaKnown RBP12.92□□□□□ -0.34
NR1I3-224ENST00000507215 FBXO22Q8NEZ5 403 aa12.92□□□□□ -0.34
NR1I3-224ENST00000507215 POTEFA5A3E0 1075 aa12.91□□□□□ -0.34
NR1I3-224ENST00000507215 SOX12O15370 315 aa12.91□□□□□ -0.34
NR1I3-224ENST00000507215 ILDR1Q86SU0 546 aaPredicted RBP12.91□□□□□ -0.34
NR1I3-224ENST00000507215 MS4A4AQ96JQ5 239 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms