RNA–Protein interactions for RNA: ENST00000498725.5

CCDC171-209, Transcript of coiled-coil domain containing 171, humanhuman

TSL 3

Gene CCDC171, Length 498 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-209ENST00000498725 TOP2BQ02880 1626 aa16.51■□□□□ 0.23
CCDC171-209ENST00000498725 PRG4Q92954 1404 aaPredicted RBP16.5■□□□□ 0.23
CCDC171-209ENST00000498725 ERICH3Q5RHP9 1530 aa16.47■□□□□ 0.23
CCDC171-209ENST00000498725 TSPOAP1O95153 1857 aa16.44■□□□□ 0.22
CCDC171-209ENST00000498725 FAM69CQ0P6D2 419 aa16.44■□□□□ 0.22
CCDC171-209ENST00000498725 JPH4Q96JJ6 628 aa16.43■□□□□ 0.22
CCDC171-209ENST00000498725 RUSC2Q8N2Y8 1516 aa16.41■□□□□ 0.22
CCDC171-209ENST00000498725 NPM1P06748 294 aaKnown RBP eCLIP16.41■□□□□ 0.22
CCDC171-209ENST00000498725 DIP2BQ9P265 1576 aa16.38■□□□□ 0.21
CCDC171-209ENST00000498725 ADCY10Q96PN6 1610 aa16.38■□□□□ 0.21
CCDC171-209ENST00000498725 ABCC10Q5T3U5 1492 aa16.38■□□□□ 0.21
CCDC171-209ENST00000498725 KDM6BO15054 1643 aa16.37■□□□□ 0.21
CCDC171-209ENST00000498725 MAPKBP1O60336 1514 aa16.34■□□□□ 0.21
CCDC171-209ENST00000498725 TTBK1Q5TCY1 1321 aaPredicted RBP16.33■□□□□ 0.2
CCDC171-209ENST00000498725 KDM4FA0A1W2PPD8 638 aa16.29■□□□□ 0.2
CCDC171-209ENST00000498725 KIAA0586Q9BVV6 1533 aa16.24■□□□□ 0.19
CCDC171-209ENST00000498725 CUL7Q14999 1698 aa16.22■□□□□ 0.19
CCDC171-209ENST00000498725 PTPRGP23470 1445 aa16.18■□□□□ 0.18
CCDC171-209ENST00000498725 IGF1RP08069 1367 aa16.17■□□□□ 0.18
CCDC171-209ENST00000498725 ILDR1Q86SU0 546 aaPredicted RBP16.17■□□□□ 0.18
CCDC171-209ENST00000498725 PPRC1Q5VV67 1664 aaKnown RBP16.17■□□□□ 0.18
CCDC171-209ENST00000498725 KIF27Q86VH2 1401 aa16.15■□□□□ 0.18
CCDC171-209ENST00000498725 ASXL2Q76L83 1435 aa16.12■□□□□ 0.17
CCDC171-209ENST00000498725 ADGRL1O94910 1474 aa16.12■□□□□ 0.17
CCDC171-209ENST00000498725 ABCC2Q92887 1545 aa16.12■□□□□ 0.17
CCDC171-209ENST00000498725 TNIKQ9UKE5 1360 aa16.11■□□□□ 0.17
CCDC171-209ENST00000498725 CARMIL2Q6F5E8 1435 aa16.11■□□□□ 0.17
CCDC171-209ENST00000498725 IQGAP2Q13576 1575 aa16.09■□□□□ 0.17
CCDC171-209ENST00000498725 CARMIL1Q5VZK9 1371 aa16.09■□□□□ 0.17
CCDC171-209ENST00000498725 PLB1Q6P1J6 1458 aa16.08■□□□□ 0.16
CCDC171-209ENST00000498725 GLI2P10070 1586 aa16.08■□□□□ 0.16
CCDC171-209ENST00000498725 ZCCHC11Q5TAX3 1644 aaKnown RBP16.05■□□□□ 0.16
CCDC171-209ENST00000498725 MAP3K4Q9Y6R4 1608 aa16.05■□□□□ 0.16
CCDC171-209ENST00000498725 UACAQ9BZF9 1416 aa16.03■□□□□ 0.16
CCDC171-209ENST00000498725 COL17A1Q9UMD9 1497 aaPredicted RBP16.03■□□□□ 0.16
CCDC171-209ENST00000498725 HECW2Q9P2P5 1572 aa16.02■□□□□ 0.16
CCDC171-209ENST00000498725 UHRF1BP1LA0JNW5 1464 aa16.02■□□□□ 0.15
CCDC171-209ENST00000498725 EPRSP07814 1512 aaKnown RBP16.01■□□□□ 0.15
CCDC171-209ENST00000498725 DISP1Q96F81 1524 aa16.01■□□□□ 0.15
CCDC171-209ENST00000498725 TEX14Q8IWB6 1497 aa15.97■□□□□ 0.15
CCDC171-209ENST00000498725 KDM5BQ9UGL1 1544 aa15.97■□□□□ 0.15
CCDC171-209ENST00000498725 KIAA0556O60303 1618 aa15.95■□□□□ 0.14
CCDC171-209ENST00000498725 UGGT2Q9NYU1 1516 aa15.93■□□□□ 0.14
CCDC171-209ENST00000498725 CTTNBP2Q8WZ74 1663 aa15.91■□□□□ 0.14
CCDC171-209ENST00000498725 RAPGEF2Q9Y4G8 1499 aa15.91■□□□□ 0.14
CCDC171-209ENST00000498725 KCNH8Q96L42 1107 aa15.9■□□□□ 0.14
CCDC171-209ENST00000498725 WDR7Q9Y4E6 1490 aa15.9■□□□□ 0.14
CCDC171-209ENST00000498725 KIF21BO75037 1637 aa15.89■□□□□ 0.13
CCDC171-209ENST00000498725 CFAP43Q8NDM7 1665 aa15.89■□□□□ 0.13
CCDC171-209ENST00000498725 CD109Q6YHK3 1445 aa15.85■□□□□ 0.13
CCDC171-209ENST00000498725 ARID3CA6NKF2 412 aa15.82■□□□□ 0.12
CCDC171-209ENST00000498725 POTEDQ86YR6 584 aa15.82■□□□□ 0.12
CCDC171-209ENST00000498725 ABCA8O94911 1581 aa15.8■□□□□ 0.12
CCDC171-209ENST00000498725 MAGI3Q5TCQ9 1506 aa15.8■□□□□ 0.12
CCDC171-209ENST00000498725 MSH5O43196 834 aa15.79■□□□□ 0.12
CCDC171-209ENST00000498725 GOLGA3Q08378 1498 aa15.78■□□□□ 0.12
CCDC171-209ENST00000498725 P3H3Q8IVL6 736 aa15.74■□□□□ 0.11
CCDC171-209ENST00000498725 FBXO41Q8TF61 875 aa15.7■□□□□ 0.1
CCDC171-209ENST00000498725 ADAMTSL3P82987 1691 aa15.7■□□□□ 0.1
CCDC171-209ENST00000498725 ARAP3Q8WWN8 1544 aa15.69■□□□□ 0.1
CCDC171-209ENST00000498725 PTPRMP28827 1452 aa15.68■□□□□ 0.1
CCDC171-209ENST00000498725 PLPPR3Q6T4P5 718 aa15.68■□□□□ 0.1
CCDC171-209ENST00000498725 ABCA9Q8IUA7 1624 aa15.68■□□□□ 0.1
CCDC171-209ENST00000498725 ATP10BO94823 1461 aa15.67■□□□□ 0.1
CCDC171-209ENST00000498725 RAPGEF3O95398 923 aa15.67■□□□□ 0.1
CCDC171-209ENST00000498725 ARID4BQ4LE39 1312 aaPredicted RBP15.67■□□□□ 0.1
CCDC171-209ENST00000498725 BCORL1Q5H9F3 1711 aa15.66■□□□□ 0.1
CCDC171-209ENST00000498725 MADDQ8WXG6 1647 aa15.66■□□□□ 0.1
CCDC171-209ENST00000498725 FAM9AQ8IZU1 332 aaPredicted RBP15.66■□□□□ 0.1
CCDC171-209ENST00000498725 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.65■□□□□ 0.1
CCDC171-209ENST00000498725 HNRNPUL2Q1KMD3 747 aaKnown RBP15.65■□□□□ 0.1
CCDC171-209ENST00000498725 PIAS4Q8N2W9 510 aaPredicted RBP15.65■□□□□ 0.1
CCDC171-209ENST00000498725 RIMS1Q86UR5 1692 aaKnown RBP15.64■□□□□ 0.09
CCDC171-209ENST00000498725 FRMPD1Q5SYB0 1578 aa15.62■□□□□ 0.09
CCDC171-209ENST00000498725 RAPGEF6Q8TEU7 1601 aa15.62■□□□□ 0.09
CCDC171-209ENST00000498725 PRXQ9BXM0 1461 aa15.62■□□□□ 0.09
CCDC171-209ENST00000498725 RANGAP1P46060 587 aaPredicted RBP15.61■□□□□ 0.09
CCDC171-209ENST00000498725 PCF11O94913 1555 aaKnown RBP15.6■□□□□ 0.09
CCDC171-209ENST00000498725 NEO1Q92859 1461 aa15.58■□□□□ 0.08
CCDC171-209ENST00000498725 PHLDB1Q86UU1 1377 aa15.57■□□□□ 0.08
CCDC171-209ENST00000498725 SAMD9Q5K651 1589 aa15.57■□□□□ 0.08
CCDC171-209ENST00000498725 LMTK3Q96Q04 1460 aa15.56■□□□□ 0.08
CCDC171-209ENST00000498725 RICTORQ6R327 1708 aa15.55■□□□□ 0.08
CCDC171-209ENST00000498725 PPP6R1Q9UPN7 881 aa15.55■□□□□ 0.08
CCDC171-209ENST00000498725 ARHGEF40Q8TER5 1519 aa15.54■□□□□ 0.08
CCDC171-209ENST00000498725 HSPA2P54652 639 aa15.54■□□□□ 0.08
CCDC171-209ENST00000498725 SIGLEC1Q9BZZ2 1709 aa15.51■□□□□ 0.07
CCDC171-209ENST00000498725 NUP153P49790 1475 aaKnown RBP15.51■□□□□ 0.07
CCDC171-209ENST00000498725 DENND4BO75064 1496 aaPredicted RBP15.5■□□□□ 0.07
CCDC171-209ENST00000498725 CFAP74Q9C0B2 1584 aa15.49■□□□□ 0.07
CCDC171-209ENST00000498725 ADRA2BP18089 450 aa15.49■□□□□ 0.07
CCDC171-209ENST00000498725 MLECQ14165 292 aa15.49■□□□□ 0.07
CCDC171-209ENST00000498725 FHOD3Q2V2M9 1422 aa15.49■□□□□ 0.07
CCDC171-209ENST00000498725 FER1L4A9Z1Z3 1794 aa15.49■□□□□ 0.07
CCDC171-209ENST00000498725 AKNAQ7Z591 1439 aa15.48■□□□□ 0.07
CCDC171-209ENST00000498725 FANCAO15360 1455 aa15.47■□□□□ 0.07
CCDC171-209ENST00000498725 TTC37Q6PGP7 1564 aa15.47■□□□□ 0.07
CCDC171-209ENST00000498725 PLEKHD1A6NEE1 506 aa15.46■□□□□ 0.07
CCDC171-209ENST00000498725 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.46■□□□□ 0.07
CCDC171-209ENST00000498725 ZFYVE16Q7Z3T8 1539 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms