RNA–Protein interactions for RNA: ENST00000494654.1

MDC1-208, Transcript of mediator of DNA damage checkpoint 1, human

TSL 3

Gene MDC1, Length 148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MDC1-208	ENST00000494654	NUBP1	P53384	320 aa		4.28	□□□□□ -1.72
MDC1-208	ENST00000494654	KLHL34	Q8N239	644 aa		4.27	□□□□□ -1.73
MDC1-208	ENST00000494654	HAX1	O00165	279 aa		4.25	□□□□□ -1.73
MDC1-208	ENST00000494654	TRIM26	Q12899	539 aa	Predicted RBP	4.25	□□□□□ -1.73
MDC1-208	ENST00000494654	TSPYL2	Q9H2G4	693 aa	Predicted RBP	4.25	□□□□□ -1.73
MDC1-208	ENST00000494654	C19orf67	A6NJJ6	358 aa		4.24	□□□□□ -1.73
MDC1-208	ENST00000494654	CENPB	P07199	599 aa	Predicted RBP	4.24	□□□□□ -1.73
MDC1-208	ENST00000494654	PHF12	Q96QT6	1004 aa		4.24	□□□□□ -1.73
MDC1-208	ENST00000494654	CD44	P16070	742 aa	Known RBP	4.23	□□□□□ -1.73
MDC1-208	ENST00000494654	DNAJC5	Q9H3Z4	198 aa		4.23	□□□□□ -1.73
MDC1-208	ENST00000494654	SPOCK2	Q92563	424 aa		4.22	□□□□□ -1.73
MDC1-208	ENST00000494654	BCL11A	Q9H165	835 aa		4.22	□□□□□ -1.73
MDC1-208	ENST00000494654	RTN4	Q9NQC3	1192 aa	Known RBP	4.22	□□□□□ -1.73
MDC1-208	ENST00000494654	PKD2	Q13563	968 aa		4.21	□□□□□ -1.74
MDC1-208	ENST00000494654	ZRANB1	Q9UGI0	708 aa		4.21	□□□□□ -1.74
MDC1-208	ENST00000494654	CCDC61	Q9Y6R9	512 aa		4.21	□□□□□ -1.74
MDC1-208	ENST00000494654	PYGB	P11216	843 aa		4.2	□□□□□ -1.74
MDC1-208	ENST00000494654	PRKCSH	P14314	528 aa	Predicted RBP	4.2	□□□□□ -1.74
MDC1-208	ENST00000494654	NEUROD1	Q13562	356 aa		4.2	□□□□□ -1.74
MDC1-208	ENST00000494654	DCAF8	Q5TAQ9	597 aa		4.2	□□□□□ -1.74
MDC1-208	ENST00000494654	CIZ1	Q9ULV3	898 aa	Predicted RBP	4.2	□□□□□ -1.74
MDC1-208	ENST00000494654	TRPC6	Q9Y210	931 aa		4.2	□□□□□ -1.74
MDC1-208	ENST00000494654	RB1CC1	Q8TDY2	1594 aa		4.19	□□□□□ -1.74
MDC1-208	ENST00000494654	PLEKHG5	O94827	1062 aa		4.19	□□□□□ -1.74
MDC1-208	ENST00000494654	NPM1	P06748	294 aa	Known RBP eCLIP	4.19	□□□□□ -1.74
MDC1-208	ENST00000494654	GTF3C3	Q9Y5Q9	886 aa		4.19	□□□□□ -1.74
MDC1-208	ENST00000494654	CLSPN	Q9HAW4	1339 aa		4.19	□□□□□ -1.74
MDC1-208	ENST00000494654	GALR2	O43603	387 aa	Predicted RBP	4.18	□□□□□ -1.74
MDC1-208	ENST00000494654	RNF25	Q96BH1	459 aa	Predicted RBP	4.18	□□□□□ -1.74
MDC1-208	ENST00000494654	UNC13A	Q9UPW8	1703 aa		4.18	□□□□□ -1.74
MDC1-208	ENST00000494654	SHROOM4	Q9ULL8	1493 aa		4.18	□□□□□ -1.74
MDC1-208	ENST00000494654	MAP3K13	O43283	966 aa		4.17	□□□□□ -1.74
MDC1-208	ENST00000494654	MS4A3	Q96HJ5	214 aa		4.17	□□□□□ -1.74
MDC1-208	ENST00000494654	RGL2	O15211	777 aa		4.16	□□□□□ -1.74
MDC1-208	ENST00000494654	ERICH6	Q7L0X2	663 aa		4.16	□□□□□ -1.74
MDC1-208	ENST00000494654	ZNF579	Q8NAF0	562 aa	Known RBP	4.16	□□□□□ -1.74
MDC1-208	ENST00000494654	KIF12	Q96FN5	646 aa		4.16	□□□□□ -1.74
MDC1-208	ENST00000494654	ZBTB47	Q9UFB7	747 aa	Predicted RBP	4.16	□□□□□ -1.74
MDC1-208	ENST00000494654	PCDHB8	Q9UN66	801 aa		4.16	□□□□□ -1.74
MDC1-208	ENST00000494654	PCDHB13	Q9Y5F0	798 aa		4.16	□□□□□ -1.74
MDC1-208	ENST00000494654	GABBR2	O75899	941 aa		4.15	□□□□□ -1.75
MDC1-208	ENST00000494654	FAM9A	Q8IZU1	332 aa	Predicted RBP	4.15	□□□□□ -1.75
MDC1-208	ENST00000494654	FAM212A	Q96EL1	285 aa		4.15	□□□□□ -1.75
MDC1-208	ENST00000494654	SUPT5H	O00267	1087 aa	Known RBP	4.14	□□□□□ -1.75
MDC1-208	ENST00000494654	POTEI	P0CG38	1075 aa		4.14	□□□□□ -1.75
MDC1-208	ENST00000494654	IFNL1	Q8IU54	200 aa		4.14	□□□□□ -1.75
MDC1-208	ENST00000494654	SP7	Q8TDD2	431 aa	Predicted RBP	4.14	□□□□□ -1.75
MDC1-208	ENST00000494654	ANP32E	Q9BTT0	268 aa		4.14	□□□□□ -1.75
MDC1-208	ENST00000494654	EIF4G1	Q04637	1599 aa	Known RBP	4.14	□□□□□ -1.75
MDC1-208	ENST00000494654	CECR2	Q9BXF3	1484 aa		4.13	□□□□□ -1.75
MDC1-208	ENST00000494654	PAK3	O75914	559 aa	Predicted RBP	4.12	□□□□□ -1.75
MDC1-208	ENST00000494654	ECM2	O94769	699 aa	Predicted RBP	4.12	□□□□□ -1.75
MDC1-208	ENST00000494654	TRIM41	Q8WV44	630 aa		4.12	□□□□□ -1.75
MDC1-208	ENST00000494654	CC2D2A	Q9P2K1	1620 aa		4.12	□□□□□ -1.75
MDC1-208	ENST00000494654	GSE1	Q14687	1217 aa		4.11	□□□□□ -1.75
MDC1-208	ENST00000494654	BICRA	Q9NZM4	1560 aa		4.1	□□□□□ -1.75
MDC1-208	ENST00000494654	CHRM1	P11229	460 aa	Predicted RBP	4.08	□□□□□ -1.76
MDC1-208	ENST00000494654	ATN1	P54259	1190 aa	Predicted RBP	4.08	□□□□□ -1.76
MDC1-208	ENST00000494654	DIEXF	Q68CQ4	756 aa	Known RBP	4.08	□□□□□ -1.76
MDC1-208	ENST00000494654	BMP2K	Q9NSY1	1161 aa	Predicted RBP	4.08	□□□□□ -1.76
MDC1-208	ENST00000494654	WRN	Q14191	1432 aa	Predicted RBP eCLIP	4.07	□□□□□ -1.76
MDC1-208	ENST00000494654	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	4.07	□□□□□ -1.76
MDC1-208	ENST00000494654	AMER1	Q5JTC6	1135 aa	Predicted RBP	4.07	□□□□□ -1.76
MDC1-208	ENST00000494654	ZFP91	Q96JP5	570 aa	Predicted RBP	4.07	□□□□□ -1.76
MDC1-208	ENST00000494654	NACAD	O15069	1562 aa		4.06	□□□□□ -1.76
MDC1-208	ENST00000494654	TTLL13P	A6NNM8	815 aa		4.06	□□□□□ -1.76
MDC1-208	ENST00000494654	RIOK3	O14730	519 aa	Known RBP	4.06	□□□□□ -1.76
MDC1-208	ENST00000494654	ATMIN	O43313	823 aa	Predicted RBP	4.06	□□□□□ -1.76
MDC1-208	ENST00000494654	PSEN1	P49768	467 aa		4.06	□□□□□ -1.76
MDC1-208	ENST00000494654	POTEF	A5A3E0	1075 aa		4.05	□□□□□ -1.76
MDC1-208	ENST00000494654	TMEM106C	Q9BVX2	250 aa		4.05	□□□□□ -1.76
MDC1-208	ENST00000494654	SCRIB	Q14160	1630 aa		4.03	□□□□□ -1.76
MDC1-208	ENST00000494654	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	4.03	□□□□□ -1.76
MDC1-208	ENST00000494654	POTEB2	H3BUK9	544 aa		4.03	□□□□□ -1.76
MDC1-208	ENST00000494654	CHGA	P10645	457 aa	Known RBP	4.03	□□□□□ -1.76
MDC1-208	ENST00000494654	NKX1-1	Q15270	411 aa	Predicted RBP	4.03	□□□□□ -1.76
MDC1-208	ENST00000494654	ASTL	Q6HA08	431 aa	Predicted RBP	4.03	□□□□□ -1.76
MDC1-208	ENST00000494654	SGIP1	Q9BQI5	828 aa		4.03	□□□□□ -1.76
MDC1-208	ENST00000494654	BCL11B	Q9C0K0	894 aa	Predicted RBP	4.03	□□□□□ -1.76
MDC1-208	ENST00000494654	CABP2	Q9NPB3	220 aa		4.03	□□□□□ -1.76
MDC1-208	ENST00000494654	TRIM35	Q9UPQ4	493 aa		4.03	□□□□□ -1.76
MDC1-208	ENST00000494654	POLR1A	O95602	1720 aa	Predicted RBP	4.03	□□□□□ -1.76
MDC1-208	ENST00000494654	STK25	O00506	426 aa		4.02	□□□□□ -1.77
MDC1-208	ENST00000494654	PDAP1	Q13442	181 aa	Known RBP	4.02	□□□□□ -1.77
MDC1-208	ENST00000494654	ZNF467	Q7Z7K2	595 aa	Predicted RBP	4.02	□□□□□ -1.77
MDC1-208	ENST00000494654	DCBLD2	Q96PD2	775 aa		4.02	□□□□□ -1.77
MDC1-208	ENST00000494654	TSHZ2	Q9NRE2	1034 aa		4.02	□□□□□ -1.77
MDC1-208	ENST00000494654	MYT1L	Q9UL68	1186 aa		4.02	□□□□□ -1.77
MDC1-208	ENST00000494654	COLQ	Q9Y215	455 aa	Predicted RBP	4.02	□□□□□ -1.77
MDC1-208	ENST00000494654	STK24	Q9Y6E0	443 aa		4.02	□□□□□ -1.77
MDC1-208	ENST00000494654	LOC105371045	A0A1W2PR82	267 aa		4.01	□□□□□ -1.77
MDC1-208	ENST00000494654	VGF	O15240	615 aa	Predicted RBP	4.01	□□□□□ -1.77
MDC1-208	ENST00000494654	POTEJ	P0CG39	1038 aa		4.01	□□□□□ -1.77
MDC1-208	ENST00000494654	TIE1	P35590	1138 aa		4.01	□□□□□ -1.77
MDC1-208	ENST00000494654	DPY19L2	Q6NUT2	758 aa		4.01	□□□□□ -1.77
MDC1-208	ENST00000494654	EFCAB3	Q8N7B9	438 aa		4.01	□□□□□ -1.77
MDC1-208	ENST00000494654	SUPT16H	Q9Y5B9	1047 aa	Known RBP	4.01	□□□□□ -1.77
MDC1-208	ENST00000494654	VIRMA	Q69YN4	1812 aa	Known RBP	4	□□□□□ -1.77
MDC1-208	ENST00000494654	ZNF316	A6NFI3	1004 aa	Predicted RBP	4	□□□□□ -1.77
MDC1-208	ENST00000494654	MS4A4A	Q96JQ5	239 aa		4	□□□□□ -1.77

Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms