RNA–Protein interactions for RNA: ENST00000493683.5

RNF40-203, Transcript of ring finger protein 40, humanhuman

TSL 2

Gene RNF40, Length 5,371 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-203ENST00000493683 SCAF1Q9H7N4 1312 aaKnown RBP26.51■■□□□ 1.84
RNF40-203ENST00000493683 RSF1Q96T23 1441 aaPredicted RBP26.49■■□□□ 1.83
RNF40-203ENST00000493683 TRIM44Q96DX7 344 aaPredicted RBP26.49■■□□□ 1.83
RNF40-203ENST00000493683 KDM2AQ9Y2K7 1162 aa26.48■■□□□ 1.83
RNF40-203ENST00000493683 CDK11BP21127 795 aaKnown RBP26.44■■□□□ 1.82
RNF40-203ENST00000493683 CDCA8Q53HL2 280 aa26.43■■□□□ 1.82
RNF40-203ENST00000493683 ARXQ96QS3 562 aa26.42■■□□□ 1.82
RNF40-203ENST00000493683 PPM1GO15355 546 aaPredicted RBP26.41■■□□□ 1.82
RNF40-203ENST00000493683 GOLGA3Q08378 1498 aa26.38■■□□□ 1.81
RNF40-203ENST00000493683 IRX6P78412 446 aaPredicted RBP26.37■■□□□ 1.81
RNF40-203ENST00000493683 CFAP53Q96M91 514 aa26.37■■□□□ 1.81
RNF40-203ENST00000493683 PLPPR3Q6T4P5 718 aa26.36■■□□□ 1.81
RNF40-203ENST00000493683 CHMP7Q8WUX9 453 aaPredicted RBP26.32■■□□□ 1.8
RNF40-203ENST00000493683 CASC1Q6TDU7 716 aa26.31■■□□□ 1.8
RNF40-203ENST00000493683 TNNT2P45379 298 aaPredicted RBP26.29■■□□□ 1.8
RNF40-203ENST00000493683 ERICH6BQ5W0A0 696 aa26.28■■□□□ 1.8
RNF40-203ENST00000493683 CEP162Q5TB80 1403 aa26.26■■□□□ 1.79
RNF40-203ENST00000493683 RRP7BPQ9NSQ0 103 aa26.24■■□□□ 1.79
RNF40-203ENST00000493683 KNSTRNQ9Y448 316 aa26.23■■□□□ 1.79
RNF40-203ENST00000493683 CHMP4BQ9H444 224 aaKnown RBP26.22■■□□□ 1.79
RNF40-203ENST00000493683 ZRSR1Q15695 479 aaKnown RBP26.22■■□□□ 1.79
RNF40-203ENST00000493683 PPP4R2Q9NY27 417 aa26.22■■□□□ 1.79
RNF40-203ENST00000493683 CCDC180Q9P1Z9 1646 aa26.21■■□□□ 1.79
RNF40-203ENST00000493683 HIRIP3Q9BW71 556 aaPredicted RBP26.2■■□□□ 1.79
RNF40-203ENST00000493683 PTMAP06454 111 aaKnown RBP26.19■■□□□ 1.78
RNF40-203ENST00000493683 PLEKHD1A6NEE1 506 aa26.19■■□□□ 1.78
RNF40-203ENST00000493683 FTSJ3Q8IY81 847 aaKnown RBP26.16■■□□□ 1.78
RNF40-203ENST00000493683 PPP1R15AO75807 674 aaPredicted RBP26.15■■□□□ 1.78
RNF40-203ENST00000493683 MS4A1P11836 297 aa26.15■■□□□ 1.78
RNF40-203ENST00000493683 TNIKQ9UKE5 1360 aa26.13■■□□□ 1.77
RNF40-203ENST00000493683 SUPT16HQ9Y5B9 1047 aaKnown RBP26.12■■□□□ 1.77
RNF40-203ENST00000493683 CARD11Q9BXL7 1154 aa26.09■■□□□ 1.77
RNF40-203ENST00000493683 NUDCQ9Y266 331 aa26.09■■□□□ 1.77
RNF40-203ENST00000493683 CEP164Q9UPV0 1460 aa26.08■■□□□ 1.77
RNF40-203ENST00000493683 MAPK8IP3Q9UPT6 1336 aa26.06■■□□□ 1.76
RNF40-203ENST00000493683 NOP58Q9Y2X3 529 aaKnown RBP26.05■■□□□ 1.76
RNF40-203ENST00000493683 DNTTIP2Q5QJE6 756 aaKnown RBP26.04■■□□□ 1.76
RNF40-203ENST00000493683 TIMELESSQ9UNS1 1208 aa26.03■■□□□ 1.76
RNF40-203ENST00000493683 KIF27Q86VH2 1401 aa26.02■■□□□ 1.76
RNF40-203ENST00000493683 CFDP1Q9UEE9 299 aaPredicted RBP26.02■■□□□ 1.76
RNF40-203ENST00000493683 WRNQ14191 1432 aaPredicted RBP eCLIP26.01■■□□□ 1.75
RNF40-203ENST00000493683 RGL3Q3MIN7 710 aa26■■□□□ 1.75
RNF40-203ENST00000493683 PNNQ9H307 717 aaKnown RBP26■■□□□ 1.75
RNF40-203ENST00000493683 GOLGA6L6A8MZA4 724 aa25.99■■□□□ 1.75
RNF40-203ENST00000493683 A0A0G2JS52 829 aa25.99■■□□□ 1.75
RNF40-203ENST00000493683 C14orf37Q86TY3 774 aa25.99■■□□□ 1.75
RNF40-203ENST00000493683 KCNH8Q96L42 1107 aa25.96■■□□□ 1.75
RNF40-203ENST00000493683 CFAP44Q96MT7 982 aa25.94■■□□□ 1.74
RNF40-203ENST00000493683 NRDCO43847 1150 aa25.94■■□□□ 1.74
RNF40-203ENST00000493683 ZBTB7CA1YPR0 619 aa25.92■■□□□ 1.74
RNF40-203ENST00000493683 NAP1L5Q96NT1 182 aaPredicted RBP25.92■■□□□ 1.74
RNF40-203ENST00000493683 HSP90AB1P08238 724 aaKnown RBP25.9■■□□□ 1.74
RNF40-203ENST00000493683 CCER2I3L3R5 266 aa25.9■■□□□ 1.74
RNF40-203ENST00000493683 RB1CC1Q8TDY2 1594 aa25.88■■□□□ 1.73
RNF40-203ENST00000493683 MYO15BQ96JP2 1530 aa25.87■■□□□ 1.73
RNF40-203ENST00000493683 L1TD1Q5T7N2 865 aaKnown RBP25.87■■□□□ 1.73
RNF40-203ENST00000493683 RGS3P49796 1198 aa25.87■■□□□ 1.73
RNF40-203ENST00000493683 LAS1LQ9Y4W2 734 aaKnown RBP25.86■■□□□ 1.73
RNF40-203ENST00000493683 FHAD1B1AJZ9 1412 aa25.85■■□□□ 1.73
RNF40-203ENST00000493683 HAP1P54257 671 aaPredicted RBP25.85■■□□□ 1.73
RNF40-203ENST00000493683 HSCBQ8IWL3 235 aa25.82■■□□□ 1.72
RNF40-203ENST00000493683 FRAT1Q92837 279 aaPredicted RBP25.82■■□□□ 1.72
RNF40-203ENST00000493683 TMF1P82094 1093 aa25.82■■□□□ 1.72
RNF40-203ENST00000493683 NEUROD2Q15784 382 aa25.8■■□□□ 1.72
RNF40-203ENST00000493683 CCNB3Q8WWL7 1395 aa25.79■■□□□ 1.72
RNF40-203ENST00000493683 POGKQ9P215 609 aa25.78■■□□□ 1.72
RNF40-203ENST00000493683 CHAF1AQ13111 956 aaPredicted RBP25.78■■□□□ 1.72
RNF40-203ENST00000493683 ARID4BQ4LE39 1312 aaPredicted RBP25.77■■□□□ 1.72
RNF40-203ENST00000493683 BAZ1BQ9UIG0 1483 aaKnown RBP25.76■■□□□ 1.71
RNF40-203ENST00000493683 PTMSP20962 102 aa25.76■■□□□ 1.71
RNF40-203ENST00000493683 MCCP23508 829 aa25.75■■□□□ 1.71
RNF40-203ENST00000493683 FGD1P98174 961 aa25.74■■□□□ 1.71
RNF40-203ENST00000493683 SIN3AQ96ST3 1273 aa25.74■■□□□ 1.71
RNF40-203ENST00000493683 OS9Q13438 667 aaPredicted RBP25.73■■□□□ 1.71
RNF40-203ENST00000493683 PLCB2Q00722 1185 aa25.72■■□□□ 1.71
RNF40-203ENST00000493683 GOLGA6L4A6NEF3 574 aa25.71■■□□□ 1.71
RNF40-203ENST00000493683 PLEKHG5O94827 1062 aa25.71■■□□□ 1.71
RNF40-203ENST00000493683 KCNJ4P48050 445 aa25.7■■□□□ 1.71
RNF40-203ENST00000493683 B4GALNT3Q6L9W6 998 aa25.7■■□□□ 1.7
RNF40-203ENST00000493683 CC2D1BQ5T0F9 858 aaKnown RBP25.69■■□□□ 1.7
RNF40-203ENST00000493683 MSNP26038 577 aaKnown RBP25.69■■□□□ 1.7
RNF40-203ENST00000493683 KANK1Q14678 1352 aa25.68■■□□□ 1.7
RNF40-203ENST00000493683 U2SURPO15042 1029 aaKnown RBP25.66■■□□□ 1.7
RNF40-203ENST00000493683 SENP3Q9H4L4 574 aaPredicted RBP25.64■■□□□ 1.7
RNF40-203ENST00000493683 NACADO15069 1562 aa25.63■■□□□ 1.69
RNF40-203ENST00000493683 TPRNQ4KMQ1 711 aa25.63■■□□□ 1.69
RNF40-203ENST00000493683 SENP3-EIF4A1A0A087X0R7 540 aa25.6■■□□□ 1.69
RNF40-203ENST00000493683 HDGFP51858 240 aaKnown RBP25.6■■□□□ 1.69
RNF40-203ENST00000493683 SETD5Q9C0A6 1442 aa25.6■■□□□ 1.69
RNF40-203ENST00000493683 IPO8O15397 1037 aaKnown RBP25.6■■□□□ 1.69
RNF40-203ENST00000493683 KTN1Q86UP2 1357 aaKnown RBP25.58■■□□□ 1.69
RNF40-203ENST00000493683 DCAF11Q8TEB1 546 aa25.58■■□□□ 1.69
RNF40-203ENST00000493683 RTN4Q9NQC3 1192 aaKnown RBP25.57■■□□□ 1.68
RNF40-203ENST00000493683 GBP4Q96PP9 640 aa25.57■■□□□ 1.68
RNF40-203ENST00000493683 DEKP35659 375 aaKnown RBP25.56■■□□□ 1.68
RNF40-203ENST00000493683 MORC1Q86VD1 984 aa25.55■■□□□ 1.68
RNF40-203ENST00000493683 TCERG1O14776 1098 aaKnown RBP25.55■■□□□ 1.68
RNF40-203ENST00000493683 RBM19Q9Y4C8 960 aaKnown RBP25.55■■□□□ 1.68
RNF40-203ENST00000493683 CALD1Q05682 793 aaKnown RBP25.54■■□□□ 1.68
RNF40-203ENST00000493683 RALBP1Q15311 655 aa25.52■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms