RNA–Protein interactions for RNA: ENST00000493303.1

CSMD3-207, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 5,703 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-207ENST00000493303 WASHC2AQ641Q2 1341 aa5.19□□□□□ -1.58
CSMD3-207ENST00000493303 DIP2BQ9P265 1576 aa5.19□□□□□ -1.58
CSMD3-207ENST00000493303 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP5.18□□□□□ -1.58
CSMD3-207ENST00000493303 TRIM26Q12899 539 aaPredicted RBP5.18□□□□□ -1.58
CSMD3-207ENST00000493303 HNRNPUL2Q1KMD3 747 aaKnown RBP5.18□□□□□ -1.58
CSMD3-207ENST00000493303 FER1L4A9Z1Z3 1794 aa5.18□□□□□ -1.58
CSMD3-207ENST00000493303 KCNA4P22459 653 aa5.17□□□□□ -1.58
CSMD3-207ENST00000493303 MROH2BQ7Z745 1585 aa5.17□□□□□ -1.58
CSMD3-207ENST00000493303 STAG3Q9UJ98 1225 aa5.16□□□□□ -1.58
CSMD3-207ENST00000493303 ADAMTSL3P82987 1691 aa5.16□□□□□ -1.58
CSMD3-207ENST00000493303 ERCC6L2Q5T890 1561 aa5.16□□□□□ -1.58
CSMD3-207ENST00000493303 EIF4G2P78344 907 aaKnown RBP eCLIP5.16□□□□□ -1.58
CSMD3-207ENST00000493303 A0A0G2JS52 829 aa5.15□□□□□ -1.58
CSMD3-207ENST00000493303 MYT1Q01538 1121 aa5.15□□□□□ -1.58
CSMD3-207ENST00000493303 PLEKHD1A6NEE1 506 aa5.15□□□□□ -1.59
CSMD3-207ENST00000493303 NUP160Q12769 1436 aa5.14□□□□□ -1.59
CSMD3-207ENST00000493303 C16orf71Q8IYS4 520 aaPredicted RBP5.14□□□□□ -1.59
CSMD3-207ENST00000493303 ARID4BQ4LE39 1312 aaPredicted RBP5.13□□□□□ -1.59
CSMD3-207ENST00000493303 ABCC8Q09428 1581 aa5.13□□□□□ -1.59
CSMD3-207ENST00000493303 TOP2BQ02880 1626 aa5.13□□□□□ -1.59
CSMD3-207ENST00000493303 PABPN1Q86U42 306 aaKnown RBP eCLIP5.13□□□□□ -1.59
CSMD3-207ENST00000493303 C14orf37Q86TY3 774 aa5.12□□□□□ -1.59
CSMD3-207ENST00000493303 IFT140Q96RY7 1462 aa5.12□□□□□ -1.59
CSMD3-207ENST00000493303 POTEDQ86YR6 584 aa5.12□□□□□ -1.59
CSMD3-207ENST00000493303 RUSC2Q8N2Y8 1516 aa5.11□□□□□ -1.59
CSMD3-207ENST00000493303 CADPSQ9ULU8 1353 aa5.11□□□□□ -1.59
CSMD3-207ENST00000493303 PPP1R1BQ9UD71 204 aaPredicted RBP5.11□□□□□ -1.59
CSMD3-207ENST00000493303 HDGFP51858 240 aaKnown RBP5.11□□□□□ -1.59
CSMD3-207ENST00000493303 NEUROD2Q15784 382 aa5.1□□□□□ -1.59
CSMD3-207ENST00000493303 ADAMTS12P58397 1594 aa5.1□□□□□ -1.59
CSMD3-207ENST00000493303 SKAP1Q86WV1 359 aa5.09□□□□□ -1.59
CSMD3-207ENST00000493303 ARID3CA6NKF2 412 aa5.08□□□□□ -1.6
CSMD3-207ENST00000493303 MAGI1Q96QZ7 1491 aaPredicted RBP5.08□□□□□ -1.6
CSMD3-207ENST00000493303 BCORL1Q5H9F3 1711 aa5.08□□□□□ -1.6
CSMD3-207ENST00000493303 GOLGA2Q08379 1002 aa5.08□□□□□ -1.6
CSMD3-207ENST00000493303 DMRT2Q9Y5R5 561 aa5.08□□□□□ -1.6
CSMD3-207ENST00000493303 TOPBP1Q92547 1522 aa5.08□□□□□ -1.6
CSMD3-207ENST00000493303 NPHP1O15259 732 aa5.08□□□□□ -1.6
CSMD3-207ENST00000493303 WIZO95785 1651 aa5.08□□□□□ -1.6
CSMD3-207ENST00000493303 ERCC6Q03468 1493 aa5.07□□□□□ -1.6
CSMD3-207ENST00000493303 UBTFP17480 764 aaKnown RBP5.07□□□□□ -1.6
CSMD3-207ENST00000493303 PDS5BQ9NTI5 1447 aa5.07□□□□□ -1.6
CSMD3-207ENST00000493303 REREQ9P2R6 1566 aa5.07□□□□□ -1.6
CSMD3-207ENST00000493303 ADCY10Q96PN6 1610 aa5.07□□□□□ -1.6
CSMD3-207ENST00000493303 SIGLEC1Q9BZZ2 1709 aa5.06□□□□□ -1.6
CSMD3-207ENST00000493303 DCAF8Q5TAQ9 597 aa5.06□□□□□ -1.6
CSMD3-207ENST00000493303 ADRA2BP18089 450 aa5.06□□□□□ -1.6
CSMD3-207ENST00000493303 FBLN2P98095 1184 aa5.05□□□□□ -1.6
CSMD3-207ENST00000493303 BEGAINQ9BUH8 593 aa5.04□□□□□ -1.6
CSMD3-207ENST00000493303 PRKCSHP14314 528 aaPredicted RBP5.04□□□□□ -1.6
CSMD3-207ENST00000493303 AIDAQ96BJ3 306 aa5.04□□□□□ -1.6
CSMD3-207ENST00000493303 ABCA10Q8WWZ4 1543 aa5.04□□□□□ -1.6
CSMD3-207ENST00000493303 CFAP44Q96MT7 982 aa5.04□□□□□ -1.6
CSMD3-207ENST00000493303 UHRF1BP1LA0JNW5 1464 aa5.04□□□□□ -1.6
CSMD3-207ENST00000493303 CEP170Q5SW79 1584 aa5.03□□□□□ -1.6
CSMD3-207ENST00000493303 FRMPD1Q5SYB0 1578 aa5.02□□□□□ -1.61
CSMD3-207ENST00000493303 IQSEC2Q5JU85 1478 aa5.02□□□□□ -1.61
CSMD3-207ENST00000493303 PELP1Q8IZL8 1130 aaKnown RBP5.02□□□□□ -1.61
CSMD3-207ENST00000493303 KIAA0586Q9BVV6 1533 aa5.01□□□□□ -1.61
CSMD3-207ENST00000493303 ERICH3Q5RHP9 1530 aa5.01□□□□□ -1.61
CSMD3-207ENST00000493303 COL17A1Q9UMD9 1497 aaPredicted RBP5□□□□□ -1.61
CSMD3-207ENST00000493303 ALKQ9UM73 1620 aa5□□□□□ -1.61
CSMD3-207ENST00000493303 CWC22Q9HCG8 908 aaKnown RBP5□□□□□ -1.61
CSMD3-207ENST00000493303 CEP164Q9UPV0 1460 aa4.99□□□□□ -1.61
CSMD3-207ENST00000493303 FANCD2Q9BXW9 1451 aa4.99□□□□□ -1.61
CSMD3-207ENST00000493303 CDK11BP21127 795 aaKnown RBP4.99□□□□□ -1.61
CSMD3-207ENST00000493303 CDK11AQ9UQ88 783 aaPredicted RBP4.99□□□□□ -1.61
CSMD3-207ENST00000493303 SYNJ1O43426 1573 aa4.99□□□□□ -1.61
CSMD3-207ENST00000493303 ZNF608Q9ULD9 1512 aaPredicted RBP4.99□□□□□ -1.61
CSMD3-207ENST00000493303 STRCQ7RTU9 1775 aa4.99□□□□□ -1.61
CSMD3-207ENST00000493303 CFAP43Q8NDM7 1665 aa4.99□□□□□ -1.61
CSMD3-207ENST00000493303 EIF4E1BA6NMX2 242 aaKnown RBP4.98□□□□□ -1.61
CSMD3-207ENST00000493303 AXDND1Q5T1B0 1012 aaPredicted RBP4.98□□□□□ -1.61
CSMD3-207ENST00000493303 ZMYM4Q5VZL5 1548 aa4.98□□□□□ -1.61
CSMD3-207ENST00000493303 PPP4R2Q9NY27 417 aa4.97□□□□□ -1.61
CSMD3-207ENST00000493303 ZNF142P52746 1687 aaPredicted RBP4.97□□□□□ -1.61
CSMD3-207ENST00000493303 RICTORQ6R327 1708 aa4.97□□□□□ -1.61
CSMD3-207ENST00000493303 ABCC10Q5T3U5 1492 aa4.96□□□□□ -1.61
CSMD3-207ENST00000493303 POLA1P09884 1462 aaPredicted RBP4.96□□□□□ -1.61
CSMD3-207ENST00000493303 KIAA0556O60303 1618 aa4.95□□□□□ -1.62
CSMD3-207ENST00000493303 SNAPC4Q5SXM2 1469 aa4.95□□□□□ -1.62
CSMD3-207ENST00000493303 ZBTB47Q9UFB7 747 aaPredicted RBP4.95□□□□□ -1.62
CSMD3-207ENST00000493303 CCDC9Q9Y3X0 531 aaKnown RBP4.94□□□□□ -1.62
CSMD3-207ENST00000493303 PPP1R15AO75807 674 aaPredicted RBP4.94□□□□□ -1.62
CSMD3-207ENST00000493303 ARHGEF6Q15052 776 aa4.94□□□□□ -1.62
CSMD3-207ENST00000493303 MIER1Q8N108 512 aa4.94□□□□□ -1.62
CSMD3-207ENST00000493303 CUX1P39880 1505 aa4.93□□□□□ -1.62
CSMD3-207ENST00000493303 SYNJ2O15056 1496 aa4.93□□□□□ -1.62
CSMD3-207ENST00000493303 TTC37Q6PGP7 1564 aa4.93□□□□□ -1.62
CSMD3-207ENST00000493303 ZBTB22O15209 634 aa4.93□□□□□ -1.62
CSMD3-207ENST00000493303 RANGAP1P46060 587 aaPredicted RBP4.93□□□□□ -1.62
CSMD3-207ENST00000493303 PPARGC1BQ86YN6 1023 aaKnown RBP4.93□□□□□ -1.62
CSMD3-207ENST00000493303 HMGB3O15347 200 aaKnown RBP4.92□□□□□ -1.62
CSMD3-207ENST00000493303 MROH2AA6NES4 1674 aa4.92□□□□□ -1.62
CSMD3-207ENST00000493303 RFX1P22670 979 aa4.92□□□□□ -1.62
CSMD3-207ENST00000493303 EPRSP07814 1512 aaKnown RBP4.91□□□□□ -1.62
CSMD3-207ENST00000493303 NOP2P46087 812 aaKnown RBP4.91□□□□□ -1.62
CSMD3-207ENST00000493303 G3V3G9 751 aa4.91□□□□□ -1.62
CSMD3-207ENST00000493303 ABCA9Q8IUA7 1624 aa4.91□□□□□ -1.62
CSMD3-207ENST00000493303 TTBK1Q5TCY1 1321 aaPredicted RBP4.9□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms