RNA–Protein interactions for RNA: ENST00000492692.1

CSMD3-206, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 2

Gene CSMD3, Length 1,830 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-206ENST00000492692 ZNF326Q5BKZ1 582 aaKnown RBP15.29■□□□□ 0.04
CSMD3-206ENST00000492692 TIMELESSQ9UNS1 1208 aa15.29■□□□□ 0.04
CSMD3-206ENST00000492692 MROH2BQ7Z745 1585 aa15.29■□□□□ 0.04
CSMD3-206ENST00000492692 RSPH4AQ5TD94 716 aa15.27■□□□□ 0.03
CSMD3-206ENST00000492692 WIZO95785 1651 aa15.25■□□□□ 0.03
CSMD3-206ENST00000492692 EHMT2Q96KQ7 1210 aa15.25■□□□□ 0.03
CSMD3-206ENST00000492692 CECR2Q9BXF3 1484 aa15.22■□□□□ 0.03
CSMD3-206ENST00000492692 NACADO15069 1562 aa15.21■□□□□ 0.03
CSMD3-206ENST00000492692 PAK3O75914 559 aaPredicted RBP15.2■□□□□ 0.02
CSMD3-206ENST00000492692 ITGAEP38570 1179 aa15.2■□□□□ 0.02
CSMD3-206ENST00000492692 HSP90AA2PQ14568 343 aaPredicted RBP15.17■□□□□ 0.02
CSMD3-206ENST00000492692 CENPJQ9HC77 1338 aaPredicted RBP15.16■□□□□ 0.02
CSMD3-206ENST00000492692 GOLGA3Q08378 1498 aa15.14■□□□□ 0.01
CSMD3-206ENST00000492692 CALD1Q05682 793 aaKnown RBP15.14■□□□□ 0.01
CSMD3-206ENST00000492692 IPO9Q96P70 1041 aaKnown RBP15.13■□□□□ 0.01
CSMD3-206ENST00000492692 TOP2AP11388 1531 aaKnown RBP15.13■□□□□ 0.01
CSMD3-206ENST00000492692 BRD2P25440 801 aaKnown RBP15.13■□□□□ 0.01
CSMD3-206ENST00000492692 BRPF3Q9ULD4 1205 aa15.13■□□□□ 0.01
CSMD3-206ENST00000492692 HOMEZQ8IX15 550 aa15.12■□□□□ 0.01
CSMD3-206ENST00000492692 CCDC88BA6NC98 1476 aa15.12■□□□□ 0.01
CSMD3-206ENST00000492692 NEFMP07197 916 aa15.08■□□□□ 0.01
CSMD3-206ENST00000492692 PRDM4Q9UKN5 801 aa15.08■□□□□ 0.01
CSMD3-206ENST00000492692 ABCC8Q09428 1581 aa15.07■□□□□ 0
CSMD3-206ENST00000492692 ZBTB47Q9UFB7 747 aaPredicted RBP15.06■□□□□ 0
CSMD3-206ENST00000492692 NAP1L2Q9ULW6 460 aaPredicted RBP15.06■□□□□ 0
CSMD3-206ENST00000492692 ANP32AP39687 249 aaKnown RBP15.05■□□□□ -0
CSMD3-206ENST00000492692 IPO4Q8TEX9 1081 aaKnown RBP15.05■□□□□ -0
CSMD3-206ENST00000492692 KIF21BO75037 1637 aa15.05■□□□□ -0
CSMD3-206ENST00000492692 HSP90AA1P07900 732 aaKnown RBP15.04■□□□□ -0
CSMD3-206ENST00000492692 SOGA1O94964 1423 aa15.03■□□□□ -0
CSMD3-206ENST00000492692 PPM1GO15355 546 aaPredicted RBP15.03■□□□□ -0
CSMD3-206ENST00000492692 GSE1Q14687 1217 aa15.02■□□□□ -0
CSMD3-206ENST00000492692 SMARCA2P51531 1590 aa15.02□□□□□ -0.01
CSMD3-206ENST00000492692 NAP1L5Q96NT1 182 aaPredicted RBP15.01□□□□□ -0.01
CSMD3-206ENST00000492692 CEP164Q9UPV0 1460 aa15□□□□□ -0.01
CSMD3-206ENST00000492692 PPP4R2Q9NY27 417 aa14.99□□□□□ -0.01
CSMD3-206ENST00000492692 VPS8Q8N3P4 1428 aa14.99□□□□□ -0.01
CSMD3-206ENST00000492692 BAZ1BQ9UIG0 1483 aaKnown RBP14.98□□□□□ -0.01
CSMD3-206ENST00000492692 UBTFP17480 764 aaKnown RBP14.97□□□□□ -0.01
CSMD3-206ENST00000492692 PAXIP1Q6ZW49 1069 aaPredicted RBP14.96□□□□□ -0.01
CSMD3-206ENST00000492692 GTF2E1P29083 439 aaPredicted RBP14.94□□□□□ -0.02
CSMD3-206ENST00000492692 HNRNPUL2Q1KMD3 747 aaKnown RBP14.94□□□□□ -0.02
CSMD3-206ENST00000492692 BBXQ8WY36 941 aaPredicted RBP14.94□□□□□ -0.02
CSMD3-206ENST00000492692 CHMP4AQ9BY43 222 aa14.92□□□□□ -0.02
CSMD3-206ENST00000492692 CLIP1P30622 1438 aa14.92□□□□□ -0.02
CSMD3-206ENST00000492692 SMARCA4P51532 1647 aa14.92□□□□□ -0.02
CSMD3-206ENST00000492692 DHX57Q6P158 1386 aaKnown RBP14.91□□□□□ -0.02
CSMD3-206ENST00000492692 CCER2I3L3R5 266 aa14.91□□□□□ -0.02
CSMD3-206ENST00000492692 NCLP19338 710 aaKnown RBP14.91□□□□□ -0.02
CSMD3-206ENST00000492692 PDCL3Q9H2J4 239 aa14.9□□□□□ -0.02
CSMD3-206ENST00000492692 DNAJC5BQ9UF47 199 aa14.89□□□□□ -0.03
CSMD3-206ENST00000492692 RUSC2Q8N2Y8 1516 aa14.89□□□□□ -0.03
CSMD3-206ENST00000492692 CANXP27824 592 aaKnown RBP14.89□□□□□ -0.03
CSMD3-206ENST00000492692 STAC3Q96MF2 364 aa14.88□□□□□ -0.03
CSMD3-206ENST00000492692 CUX2O14529 1486 aa14.87□□□□□ -0.03
CSMD3-206ENST00000492692 UNC13AQ9UPW8 1703 aa14.87□□□□□ -0.03
CSMD3-206ENST00000492692 CHRM1P11229 460 aaPredicted RBP14.86□□□□□ -0.03
CSMD3-206ENST00000492692 CNGB1Q14028 1251 aaPredicted RBP14.85□□□□□ -0.03
CSMD3-206ENST00000492692 TEX2Q8IWB9 1127 aa14.84□□□□□ -0.03
CSMD3-206ENST00000492692 KCNH8Q96L42 1107 aa14.83□□□□□ -0.04
CSMD3-206ENST00000492692 CHMP4BQ9H444 224 aaKnown RBP14.83□□□□□ -0.04
CSMD3-206ENST00000492692 BCCIPQ9P287 314 aaKnown RBP eCLIP14.83□□□□□ -0.04
CSMD3-206ENST00000492692 RGS3P49796 1198 aa14.8□□□□□ -0.04
CSMD3-206ENST00000492692 SAMD1Q6SPF0 538 aaPredicted RBP14.8□□□□□ -0.04
CSMD3-206ENST00000492692 FTSJ3Q8IY81 847 aaKnown RBP14.8□□□□□ -0.04
CSMD3-206ENST00000492692 DHX37Q8IY37 1157 aaKnown RBP14.8□□□□□ -0.04
CSMD3-206ENST00000492692 RRAGDQ9NQL2 400 aaPredicted RBP14.8□□□□□ -0.04
CSMD3-206ENST00000492692 CLCN1P35523 988 aa14.79□□□□□ -0.04
CSMD3-206ENST00000492692 FRAT1Q92837 279 aaPredicted RBP14.79□□□□□ -0.04
CSMD3-206ENST00000492692 VGFO15240 615 aaPredicted RBP14.78□□□□□ -0.04
CSMD3-206ENST00000492692 TPM2P07951 284 aa14.78□□□□□ -0.04
CSMD3-206ENST00000492692 PNNQ9H307 717 aaKnown RBP14.78□□□□□ -0.04
CSMD3-206ENST00000492692 ARID4BQ4LE39 1312 aaPredicted RBP14.78□□□□□ -0.04
CSMD3-206ENST00000492692 TULP1O00294 542 aaPredicted RBP14.78□□□□□ -0.04
CSMD3-206ENST00000492692 BICRAQ9NZM4 1560 aa14.77□□□□□ -0.04
CSMD3-206ENST00000492692 RRBP1Q9P2E9 1410 aaKnown RBP14.77□□□□□ -0.04
CSMD3-206ENST00000492692 NPM2Q86SE8 214 aaKnown RBP14.77□□□□□ -0.05
CSMD3-206ENST00000492692 PABPN1Q86U42 306 aaKnown RBP eCLIP14.77□□□□□ -0.05
CSMD3-206ENST00000492692 SMAP1Q8IYB5 467 aaPredicted RBP14.77□□□□□ -0.05
CSMD3-206ENST00000492692 NCAPD3P42695 1498 aa14.76□□□□□ -0.05
CSMD3-206ENST00000492692 CNKSR2Q8WXI2 1034 aa14.75□□□□□ -0.05
CSMD3-206ENST00000492692 ZFP91Q96JP5 570 aaPredicted RBP14.73□□□□□ -0.05
CSMD3-206ENST00000492692 UTP14CQ5TAP6 766 aaKnown RBP14.72□□□□□ -0.05
CSMD3-206ENST00000492692 ERICH3Q5RHP9 1530 aa14.71□□□□□ -0.05
CSMD3-206ENST00000492692 MAP7D2Q96T17 732 aa14.71□□□□□ -0.05
CSMD3-206ENST00000492692 SYNJ1O43426 1573 aa14.71□□□□□ -0.05
CSMD3-206ENST00000492692 DCAF11Q8TEB1 546 aa14.71□□□□□ -0.06
CSMD3-206ENST00000492692 PEG3Q9GZU2 1588 aa14.7□□□□□ -0.06
CSMD3-206ENST00000492692 HSP90B1P14625 803 aaKnown RBP14.69□□□□□ -0.06
CSMD3-206ENST00000492692 PLPPR3Q6T4P5 718 aa14.69□□□□□ -0.06
CSMD3-206ENST00000492692 LAS1LQ9Y4W2 734 aaKnown RBP14.68□□□□□ -0.06
CSMD3-206ENST00000492692 RAPGEF2Q9Y4G8 1499 aa14.67□□□□□ -0.06
CSMD3-206ENST00000492692 NFKBIBQ15653 356 aa14.66□□□□□ -0.06
CSMD3-206ENST00000492692 L1TD1Q5T7N2 865 aaKnown RBP14.66□□□□□ -0.06
CSMD3-206ENST00000492692 DDRGK1Q96HY6 314 aa14.64□□□□□ -0.07
CSMD3-206ENST00000492692 FBXO3Q9UK99 471 aa14.63□□□□□ -0.07
CSMD3-206ENST00000492692 SECISBP2LQ93073 1101 aaKnown RBP14.62□□□□□ -0.07
CSMD3-206ENST00000492692 TRIM52Q96A61 297 aa14.62□□□□□ -0.07
CSMD3-206ENST00000492692 TMEM51Q9NW97 253 aa14.62□□□□□ -0.07
CSMD3-206ENST00000492692 ARAP1Q96P48 1450 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms