RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 IRX6P78412 446 aaPredicted RBP9.67□□□□□ -0.86
SYNE1-228ENST00000490135 FANCIQ9NVI1 1328 aa9.67□□□□□ -0.86
SYNE1-228ENST00000490135 TRIM44Q96DX7 344 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-228ENST00000490135 ARID4BQ4LE39 1312 aaPredicted RBP9.65□□□□□ -0.86
SYNE1-228ENST00000490135 DDRGK1Q96HY6 314 aa9.65□□□□□ -0.87
SYNE1-228ENST00000490135 PDIA4P13667 645 aaKnown RBP9.64□□□□□ -0.87
SYNE1-228ENST00000490135 ZMYND15Q9H091 742 aa9.62□□□□□ -0.87
SYNE1-228ENST00000490135 A0A0G2JS52 829 aa9.61□□□□□ -0.87
SYNE1-228ENST00000490135 STAG3Q9UJ98 1225 aa9.61□□□□□ -0.87
SYNE1-228ENST00000490135 PNNQ9H307 717 aaKnown RBP9.6□□□□□ -0.87
SYNE1-228ENST00000490135 TULP1O00294 542 aaPredicted RBP9.59□□□□□ -0.87
SYNE1-228ENST00000490135 L1TD1Q5T7N2 865 aaKnown RBP9.57□□□□□ -0.88
SYNE1-228ENST00000490135 ZRSR1Q15695 479 aaKnown RBP9.57□□□□□ -0.88
SYNE1-228ENST00000490135 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.57□□□□□ -0.88
SYNE1-228ENST00000490135 PLPPR3Q6T4P5 718 aa9.56□□□□□ -0.88
SYNE1-228ENST00000490135 HNRNPUQ00839 825 aaKnown RBP eCLIP9.55□□□□□ -0.88
SYNE1-228ENST00000490135 PPP4R2Q9NY27 417 aa9.55□□□□□ -0.88
SYNE1-228ENST00000490135 MYH16Q9H6N6 1097 aa9.55□□□□□ -0.88
SYNE1-228ENST00000490135 FBLN2P98095 1184 aa9.54□□□□□ -0.88
SYNE1-228ENST00000490135 IPO9Q96P70 1041 aaKnown RBP9.54□□□□□ -0.88
SYNE1-228ENST00000490135 TAF7LQ5H9L4 462 aa9.53□□□□□ -0.88
SYNE1-228ENST00000490135 CHGAP10645 457 aaKnown RBP9.52□□□□□ -0.88
SYNE1-228ENST00000490135 HAP1P54257 671 aaPredicted RBP9.52□□□□□ -0.89
SYNE1-228ENST00000490135 NCBP3Q53F19 620 aaKnown RBP9.52□□□□□ -0.89
SYNE1-228ENST00000490135 USP35Q9P2H5 1018 aa9.52□□□□□ -0.89
SYNE1-228ENST00000490135 RBM10P98175 930 aaKnown RBP9.51□□□□□ -0.89
SYNE1-228ENST00000490135 ARID3AQ99856 593 aa9.51□□□□□ -0.89
SYNE1-228ENST00000490135 GSE1Q14687 1217 aa9.5□□□□□ -0.89
SYNE1-228ENST00000490135 PTMAP06454 111 aaKnown RBP9.49□□□□□ -0.89
SYNE1-228ENST00000490135 GOLGA6L22H0YM25 854 aa9.48□□□□□ -0.89
SYNE1-228ENST00000490135 MSH5O43196 834 aa9.48□□□□□ -0.89
SYNE1-228ENST00000490135 RRP9O43818 475 aaKnown RBP9.48□□□□□ -0.89
SYNE1-228ENST00000490135 BCL11BQ9C0K0 894 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-228ENST00000490135 BRPF3Q9ULD4 1205 aa9.47□□□□□ -0.89
SYNE1-228ENST00000490135 FAM43AQ8N2R8 423 aa9.47□□□□□ -0.89
SYNE1-228ENST00000490135 APPP05067 770 aa9.47□□□□□ -0.89
SYNE1-228ENST00000490135 DNTTIP2Q5QJE6 756 aaKnown RBP9.47□□□□□ -0.89
SYNE1-228ENST00000490135 DDX10Q13206 875 aaKnown RBP9.45□□□□□ -0.9
SYNE1-228ENST00000490135 PAXIP1Q6ZW49 1069 aaPredicted RBP9.45□□□□□ -0.9
SYNE1-228ENST00000490135 ZNF777Q9ULD5 760 aaPredicted RBP9.45□□□□□ -0.9
SYNE1-228ENST00000490135 PTMSP20962 102 aa9.44□□□□□ -0.9
SYNE1-228ENST00000490135 ZBTB7CA1YPR0 619 aa9.44□□□□□ -0.9
SYNE1-228ENST00000490135 GOLGA6L6A8MZA4 724 aa9.44□□□□□ -0.9
SYNE1-228ENST00000490135 B4GALNT3Q6L9W6 998 aa9.43□□□□□ -0.9
SYNE1-228ENST00000490135 CLSTN1O94985 981 aa9.43□□□□□ -0.9
SYNE1-228ENST00000490135 BECN1Q14457 450 aa9.43□□□□□ -0.9
SYNE1-228ENST00000490135 WDR43Q15061 677 aaKnown RBP eCLIP9.43□□□□□ -0.9
SYNE1-228ENST00000490135 MSNP26038 577 aaKnown RBP9.41□□□□□ -0.9
SYNE1-228ENST00000490135 TNNT3P45378 269 aaPredicted RBP9.41□□□□□ -0.9
SYNE1-228ENST00000490135 FGD1P98174 961 aa9.4□□□□□ -0.9
SYNE1-228ENST00000490135 BBXQ8WY36 941 aaPredicted RBP9.4□□□□□ -0.9
SYNE1-228ENST00000490135 PRM3Q9NNZ6 103 aa9.39□□□□□ -0.91
SYNE1-228ENST00000490135 NRDCO43847 1150 aa9.39□□□□□ -0.91
SYNE1-228ENST00000490135 CASC1Q6TDU7 716 aa9.39□□□□□ -0.91
SYNE1-228ENST00000490135 C14orf37Q86TY3 774 aa9.39□□□□□ -0.91
SYNE1-228ENST00000490135 ARID3CA6NKF2 412 aa9.38□□□□□ -0.91
SYNE1-228ENST00000490135 NPHP1O15259 732 aa9.38□□□□□ -0.91
SYNE1-228ENST00000490135 FAM9BQ8IZU0 186 aa9.38□□□□□ -0.91
SYNE1-228ENST00000490135 TPRNQ4KMQ1 711 aa9.37□□□□□ -0.91
SYNE1-228ENST00000490135 NPM1P06748 294 aaKnown RBP eCLIP9.37□□□□□ -0.91
SYNE1-228ENST00000490135 GOLGA6L3A6NEY3 463 aa9.36□□□□□ -0.91
SYNE1-228ENST00000490135 TMC1Q8TDI8 760 aa9.35□□□□□ -0.91
SYNE1-228ENST00000490135 TPM2P07951 284 aa9.35□□□□□ -0.91
SYNE1-228ENST00000490135 NAP1L2Q9ULW6 460 aaPredicted RBP9.34□□□□□ -0.91
SYNE1-228ENST00000490135 TAOK2Q9UL54 1235 aa9.34□□□□□ -0.91
SYNE1-228ENST00000490135 PLCB2Q00722 1185 aa9.33□□□□□ -0.92
SYNE1-228ENST00000490135 FRAT1Q92837 279 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-228ENST00000490135 KLHL34Q8N239 644 aa9.32□□□□□ -0.92
SYNE1-228ENST00000490135 TONSLQ96HA7 1378 aa9.31□□□□□ -0.92
SYNE1-228ENST00000490135 FAM13BQ9NYF5 915 aa9.31□□□□□ -0.92
SYNE1-228ENST00000490135 PAK3O75914 559 aaPredicted RBP9.31□□□□□ -0.92
SYNE1-228ENST00000490135 MAP7D2Q96T17 732 aa9.3□□□□□ -0.92
SYNE1-228ENST00000490135 ZNF771Q7L3S4 317 aaPredicted RBP9.3□□□□□ -0.92
SYNE1-228ENST00000490135 HOMEZQ8IX15 550 aa9.3□□□□□ -0.92
SYNE1-228ENST00000490135 CHAF1AQ13111 956 aaPredicted RBP9.3□□□□□ -0.92
SYNE1-228ENST00000490135 GOLGA2Q08379 1002 aa9.3□□□□□ -0.92
SYNE1-228ENST00000490135 KIAA2012Q0VF49 1180 aa9.29□□□□□ -0.92
SYNE1-228ENST00000490135 NOC3LQ8WTT2 800 aaKnown RBP9.28□□□□□ -0.92
SYNE1-228ENST00000490135 AAMPQ13685 434 aa9.28□□□□□ -0.92
SYNE1-228ENST00000490135 PATL2C9JE40 543 aaKnown RBP9.28□□□□□ -0.92
SYNE1-228ENST00000490135 P3H3Q8IVL6 736 aa9.27□□□□□ -0.92
SYNE1-228ENST00000490135 PPP1R15AO75807 674 aaPredicted RBP9.27□□□□□ -0.93
SYNE1-228ENST00000490135 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.26□□□□□ -0.93
SYNE1-228ENST00000490135 ISY1Q9ULR0 285 aaKnown RBP9.26□□□□□ -0.93
SYNE1-228ENST00000490135 RGS3P49796 1198 aa9.25□□□□□ -0.93
SYNE1-228ENST00000490135 CHMP4BQ9H444 224 aaKnown RBP9.25□□□□□ -0.93
SYNE1-228ENST00000490135 GZF1Q9H116 711 aaPredicted RBP9.25□□□□□ -0.93
SYNE1-228ENST00000490135 GOLGA6L4A6NEF3 574 aa9.25□□□□□ -0.93
SYNE1-228ENST00000490135 BRD2P25440 801 aaKnown RBP9.25□□□□□ -0.93
SYNE1-228ENST00000490135 MTERF4Q7Z6M4 381 aaKnown RBP9.25□□□□□ -0.93
SYNE1-228ENST00000490135 KRI1Q8N9T8 703 aaKnown RBP9.25□□□□□ -0.93
SYNE1-228ENST00000490135 CCER2I3L3R5 266 aa9.24□□□□□ -0.93
SYNE1-228ENST00000490135 KCNJ4P48050 445 aa9.24□□□□□ -0.93
SYNE1-228ENST00000490135 OS9Q13438 667 aaPredicted RBP9.23□□□□□ -0.93
SYNE1-228ENST00000490135 PDCL3Q9H2J4 239 aa9.23□□□□□ -0.93
SYNE1-228ENST00000490135 TAF3Q5VWG9 929 aa9.23□□□□□ -0.93
SYNE1-228ENST00000490135 TCERG1O14776 1098 aaKnown RBP9.23□□□□□ -0.93
SYNE1-228ENST00000490135 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.22□□□□□ -0.93
SYNE1-228ENST00000490135 MRS2Q9HD23 443 aa9.22□□□□□ -0.93
SYNE1-228ENST00000490135 MAPK8IP2Q13387 824 aaPredicted RBP9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms