RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 TSPY4P0CV99 314 aa23.37■■□□□ 1.33
NPHP4-209ENST00000489180 TSPY10P0CW01 314 aa23.37■■□□□ 1.33
NPHP4-209ENST00000489180 SUPT16HQ9Y5B9 1047 aaKnown RBP23.33■■□□□ 1.33
NPHP4-209ENST00000489180 CEP162Q5TB80 1403 aa23.28■■□□□ 1.32
NPHP4-209ENST00000489180 ANP32EQ9BTT0 268 aa23.28■■□□□ 1.32
NPHP4-209ENST00000489180 MYH16Q9H6N6 1097 aa23.28■■□□□ 1.32
NPHP4-209ENST00000489180 NPM1P06748 294 aaKnown RBP eCLIP23.27■■□□□ 1.32
NPHP4-209ENST00000489180 DDRGK1Q96HY6 314 aa23.26■■□□□ 1.31
NPHP4-209ENST00000489180 BECN1Q14457 450 aa23.22■■□□□ 1.31
NPHP4-209ENST00000489180 RGL3Q3MIN7 710 aa23.22■■□□□ 1.31
NPHP4-209ENST00000489180 PLEKHG5O94827 1062 aa23.19■■□□□ 1.3
NPHP4-209ENST00000489180 GOLGA3Q08378 1498 aa23.17■■□□□ 1.3
NPHP4-209ENST00000489180 TRIM44Q96DX7 344 aaPredicted RBP23.16■■□□□ 1.3
NPHP4-209ENST00000489180 ZBTB7CA1YPR0 619 aa23.15■■□□□ 1.3
NPHP4-209ENST00000489180 LAS1LQ9Y4W2 734 aaKnown RBP23.15■■□□□ 1.3
NPHP4-209ENST00000489180 CCDC180Q9P1Z9 1646 aa23.15■■□□□ 1.3
NPHP4-209ENST00000489180 SIN3AQ96ST3 1273 aa23.13■■□□□ 1.29
NPHP4-209ENST00000489180 NCLP19338 710 aaKnown RBP23.13■■□□□ 1.29
NPHP4-209ENST00000489180 CHMP7Q8WUX9 453 aaPredicted RBP23.12■■□□□ 1.29
NPHP4-209ENST00000489180 RTN4Q9NQC3 1192 aaKnown RBP23.11■■□□□ 1.29
NPHP4-209ENST00000489180 TPRNQ4KMQ1 711 aa23.1■■□□□ 1.29
NPHP4-209ENST00000489180 KCNH8Q96L42 1107 aa23.09■■□□□ 1.29
NPHP4-209ENST00000489180 NEUROD2Q15784 382 aa23.07■■□□□ 1.28
NPHP4-209ENST00000489180 CARD11Q9BXL7 1154 aa23.05■■□□□ 1.28
NPHP4-209ENST00000489180 GOLGA6L22H0YM25 854 aa23.04■■□□□ 1.28
NPHP4-209ENST00000489180 C14orf37Q86TY3 774 aa23.04■■□□□ 1.28
NPHP4-209ENST00000489180 KNSTRNQ9Y448 316 aa23.04■■□□□ 1.28
NPHP4-209ENST00000489180 A0A0G2JS52 829 aa23.04■■□□□ 1.28
NPHP4-209ENST00000489180 PPP4R2Q9NY27 417 aa23.04■■□□□ 1.28
NPHP4-209ENST00000489180 RSF1Q96T23 1441 aaPredicted RBP23.04■■□□□ 1.28
NPHP4-209ENST00000489180 RGS3P49796 1198 aa23.04■■□□□ 1.28
NPHP4-209ENST00000489180 PPM1GO15355 546 aaPredicted RBP23.01■■□□□ 1.27
NPHP4-209ENST00000489180 B4GALNT3Q6L9W6 998 aa23.01■■□□□ 1.27
NPHP4-209ENST00000489180 FTSJ3Q8IY81 847 aaKnown RBP23■■□□□ 1.27
NPHP4-209ENST00000489180 NOP58Q9Y2X3 529 aaKnown RBP22.99■■□□□ 1.27
NPHP4-209ENST00000489180 CFAP53Q96M91 514 aa22.98■■□□□ 1.27
NPHP4-209ENST00000489180 EEA1Q15075 1411 aa22.98■■□□□ 1.27
NPHP4-209ENST00000489180 PPP1R15AO75807 674 aaPredicted RBP22.98■■□□□ 1.27
NPHP4-209ENST00000489180 PTMAP06454 111 aaKnown RBP22.97■■□□□ 1.27
NPHP4-209ENST00000489180 PLEKHD1A6NEE1 506 aa22.96■■□□□ 1.27
NPHP4-209ENST00000489180 FRAT1Q92837 279 aaPredicted RBP22.95■■□□□ 1.26
NPHP4-209ENST00000489180 TNIKQ9UKE5 1360 aa22.95■■□□□ 1.26
NPHP4-209ENST00000489180 CC2D1BQ5T0F9 858 aaKnown RBP22.95■■□□□ 1.26
NPHP4-209ENST00000489180 CFDP1Q9UEE9 299 aaPredicted RBP22.93■■□□□ 1.26
NPHP4-209ENST00000489180 WRNQ14191 1432 aaPredicted RBP eCLIP22.93■■□□□ 1.26
NPHP4-209ENST00000489180 TNNT2P45379 298 aaPredicted RBP22.92■■□□□ 1.26
NPHP4-209ENST00000489180 NAP1L5Q96NT1 182 aaPredicted RBP22.9■■□□□ 1.26
NPHP4-209ENST00000489180 DNTTIP2Q5QJE6 756 aaKnown RBP22.89■■□□□ 1.26
NPHP4-209ENST00000489180 CDCA8Q53HL2 280 aa22.88■■□□□ 1.25
NPHP4-209ENST00000489180 CASC1Q6TDU7 716 aa22.88■■□□□ 1.25
NPHP4-209ENST00000489180 CDK11BP21127 795 aaKnown RBP22.86■■□□□ 1.25
NPHP4-209ENST00000489180 CEP164Q9UPV0 1460 aa22.85■■□□□ 1.25
NPHP4-209ENST00000489180 ERICH6BQ5W0A0 696 aa22.85■■□□□ 1.25
NPHP4-209ENST00000489180 MAPK8IP3Q9UPT6 1336 aa22.84■■□□□ 1.25
NPHP4-209ENST00000489180 PLCB2Q00722 1185 aa22.8■■□□□ 1.24
NPHP4-209ENST00000489180 ZRSR1Q15695 479 aaKnown RBP22.79■■□□□ 1.24
NPHP4-209ENST00000489180 KIF27Q86VH2 1401 aa22.79■■□□□ 1.24
NPHP4-209ENST00000489180 TAOK2Q9UL54 1235 aa22.78■■□□□ 1.24
NPHP4-209ENST00000489180 HSP90AB1P08238 724 aaKnown RBP22.77■■□□□ 1.24
NPHP4-209ENST00000489180 RBM19Q9Y4C8 960 aaKnown RBP22.77■■□□□ 1.24
NPHP4-209ENST00000489180 SPRYD3Q8NCJ5 442 aa22.75■■□□□ 1.23
NPHP4-209ENST00000489180 U2SURPO15042 1029 aaKnown RBP22.74■■□□□ 1.23
NPHP4-209ENST00000489180 DEKP35659 375 aaKnown RBP22.74■■□□□ 1.23
NPHP4-209ENST00000489180 NUDCQ9Y266 331 aa22.74■■□□□ 1.23
NPHP4-209ENST00000489180 CCNB3Q8WWL7 1395 aa22.74■■□□□ 1.23
NPHP4-209ENST00000489180 DCAF11Q8TEB1 546 aa22.71■■□□□ 1.23
NPHP4-209ENST00000489180 POGKQ9P215 609 aa22.69■■□□□ 1.22
NPHP4-209ENST00000489180 BAZ1BQ9UIG0 1483 aaKnown RBP22.68■■□□□ 1.22
NPHP4-209ENST00000489180 HSPA5P11021 654 aaKnown RBP22.67■■□□□ 1.22
NPHP4-209ENST00000489180 CCER2I3L3R5 266 aa22.65■■□□□ 1.22
NPHP4-209ENST00000489180 ARID4BQ4LE39 1312 aaPredicted RBP22.64■■□□□ 1.21
NPHP4-209ENST00000489180 TMF1P82094 1093 aa22.63■■□□□ 1.21
NPHP4-209ENST00000489180 TULP1O00294 542 aaPredicted RBP22.63■■□□□ 1.21
NPHP4-209ENST00000489180 SOGA1O94964 1423 aa22.63■■□□□ 1.21
NPHP4-209ENST00000489180 OS9Q13438 667 aaPredicted RBP22.62■■□□□ 1.21
NPHP4-209ENST00000489180 HSCBQ8IWL3 235 aa22.62■■□□□ 1.21
NPHP4-209ENST00000489180 HAP1P54257 671 aaPredicted RBP22.62■■□□□ 1.21
NPHP4-209ENST00000489180 RB1CC1Q8TDY2 1594 aa22.61■■□□□ 1.21
NPHP4-209ENST00000489180 FOXD1Q16676 465 aa22.6■■□□□ 1.21
NPHP4-209ENST00000489180 LMOD2Q6P5Q4 547 aa22.6■■□□□ 1.21
NPHP4-209ENST00000489180 MS4A1P11836 297 aa22.58■■□□□ 1.21
NPHP4-209ENST00000489180 NAP1L2Q9ULW6 460 aaPredicted RBP22.58■■□□□ 1.2
NPHP4-209ENST00000489180 KCNJ4P48050 445 aa22.56■■□□□ 1.2
NPHP4-209ENST00000489180 FGD1P98174 961 aa22.56■■□□□ 1.2
NPHP4-209ENST00000489180 SETD5Q9C0A6 1442 aa22.56■■□□□ 1.2
NPHP4-209ENST00000489180 CHMP4BQ9H444 224 aaKnown RBP22.55■■□□□ 1.2
NPHP4-209ENST00000489180 KANK4Q5T7N3 995 aaPredicted RBP22.53■■□□□ 1.2
NPHP4-209ENST00000489180 SOX12O15370 315 aa22.53■■□□□ 1.2
NPHP4-209ENST00000489180 SAFB2Q14151 953 aaKnown RBP eCLIP22.53■■□□□ 1.2
NPHP4-209ENST00000489180 MORC1Q86VD1 984 aa22.52■■□□□ 1.2
NPHP4-209ENST00000489180 EIF4G1Q04637 1599 aaKnown RBP22.51■■□□□ 1.19
NPHP4-209ENST00000489180 FHAD1B1AJZ9 1412 aa22.5■■□□□ 1.19
NPHP4-209ENST00000489180 L1TD1Q5T7N2 865 aaKnown RBP22.5■■□□□ 1.19
NPHP4-209ENST00000489180 TIMELESSQ9UNS1 1208 aa22.49■■□□□ 1.19
NPHP4-209ENST00000489180 TSHZ2Q9NRE2 1034 aa22.49■■□□□ 1.19
NPHP4-209ENST00000489180 APBB1O00213 710 aa22.48■■□□□ 1.19
NPHP4-209ENST00000489180 MSNP26038 577 aaKnown RBP22.48■■□□□ 1.19
NPHP4-209ENST00000489180 SRPK2P78362 688 aaKnown RBP22.47■■□□□ 1.19
NPHP4-209ENST00000489180 PNNQ9H307 717 aaKnown RBP22.47■■□□□ 1.19
NPHP4-209ENST00000489180 GOLGA6L4A6NEF3 574 aa22.46■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms