RNA–Protein interactions for RNA: ENST00000482871.5

MSL3-215, Transcript of MSL complex subunit 3, human

TSL 3

Gene MSL3, Length 834 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MSL3-215	ENST00000482871	SHROOM4	Q9ULL8	1493 aa		14.42	□□□□□ -0.1
MSL3-215	ENST00000482871	FARP1	Q9Y4F1	1045 aa	Predicted RBP	14.4	□□□□□ -0.1
MSL3-215	ENST00000482871	MNX1	P50219	401 aa	Predicted RBP	14.36	□□□□□ -0.11
MSL3-215	ENST00000482871	NPM1	P06748	294 aa	Known RBP eCLIP	14.35	□□□□□ -0.11
MSL3-215	ENST00000482871	HAP1	P54257	671 aa	Predicted RBP	14.31	□□□□□ -0.12
MSL3-215	ENST00000482871	SPOCK2	Q92563	424 aa		14.28	□□□□□ -0.12
MSL3-215	ENST00000482871	BCAN	Q96GW7	911 aa		14.27	□□□□□ -0.13
MSL3-215	ENST00000482871	HAX1	O00165	279 aa		14.2	□□□□□ -0.14
MSL3-215	ENST00000482871	NUBP1	P53384	320 aa		14.2	□□□□□ -0.14
MSL3-215	ENST00000482871	RASEF	Q8IZ41	740 aa		14.17	□□□□□ -0.14
MSL3-215	ENST00000482871	PRKCSH	P14314	528 aa	Predicted RBP	14.16	□□□□□ -0.14
MSL3-215	ENST00000482871	SP7	Q8TDD2	431 aa	Predicted RBP	14.16	□□□□□ -0.14
MSL3-215	ENST00000482871	TSPYL2	Q9H2G4	693 aa	Predicted RBP	14.16	□□□□□ -0.14
MSL3-215	ENST00000482871	CD44	P16070	742 aa	Known RBP	14.15	□□□□□ -0.14
MSL3-215	ENST00000482871	PAK3	O75914	559 aa	Predicted RBP	14.14	□□□□□ -0.15
MSL3-215	ENST00000482871	DCAF8	Q5TAQ9	597 aa		14.14	□□□□□ -0.15
MSL3-215	ENST00000482871	VSIG10	Q8N0Z9	540 aa		14.14	□□□□□ -0.15
MSL3-215	ENST00000482871	FAM212A	Q96EL1	285 aa		14.14	□□□□□ -0.15
MSL3-215	ENST00000482871	TAOK2	Q9UL54	1235 aa		14.13	□□□□□ -0.15
MSL3-215	ENST00000482871	CIZ1	Q9ULV3	898 aa	Predicted RBP	14.13	□□□□□ -0.15
MSL3-215	ENST00000482871	EIF4G1	Q04637	1599 aa	Known RBP	14.13	□□□□□ -0.15
MSL3-215	ENST00000482871	C19orf67	A6NJJ6	358 aa		14.11	□□□□□ -0.15
MSL3-215	ENST00000482871	ZRANB1	Q9UGI0	708 aa		14.08	□□□□□ -0.16
MSL3-215	ENST00000482871	GSE1	Q14687	1217 aa		14.06	□□□□□ -0.16
MSL3-215	ENST00000482871	CECR2	Q9BXF3	1484 aa		14.06	□□□□□ -0.16
MSL3-215	ENST00000482871	CC2D2A	Q9P2K1	1620 aa		14.04	□□□□□ -0.16
MSL3-215	ENST00000482871	PKD2	Q13563	968 aa		14.02	□□□□□ -0.17
MSL3-215	ENST00000482871	EVX2	Q03828	476 aa		14.01	□□□□□ -0.17
MSL3-215	ENST00000482871	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	14	□□□□□ -0.17
MSL3-215	ENST00000482871	SMARCA4	P51532	1647 aa		13.99	□□□□□ -0.17
MSL3-215	ENST00000482871	CCDC61	Q9Y6R9	512 aa		13.97	□□□□□ -0.17
MSL3-215	ENST00000482871	PHF12	Q96QT6	1004 aa		13.95	□□□□□ -0.18
MSL3-215	ENST00000482871	PYGB	P11216	843 aa		13.94	□□□□□ -0.18
MSL3-215	ENST00000482871	MROH2B	Q7Z745	1585 aa		13.92	□□□□□ -0.18
MSL3-215	ENST00000482871	ZNF579	Q8NAF0	562 aa	Known RBP	13.92	□□□□□ -0.18
MSL3-215	ENST00000482871	ECM2	O94769	699 aa	Predicted RBP	13.91	□□□□□ -0.18
MSL3-215	ENST00000482871	TPRN	Q4KMQ1	711 aa		13.89	□□□□□ -0.19
MSL3-215	ENST00000482871	TRIM41	Q8WV44	630 aa		13.89	□□□□□ -0.19
MSL3-215	ENST00000482871	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	13.89	□□□□□ -0.19
MSL3-215	ENST00000482871	SMARCA2	P51531	1590 aa		13.88	□□□□□ -0.19
MSL3-215	ENST00000482871	BBX	Q8WY36	941 aa	Predicted RBP	13.87	□□□□□ -0.19
MSL3-215	ENST00000482871	KDM2A	Q9Y2K7	1162 aa		13.87	□□□□□ -0.19
MSL3-215	ENST00000482871	ATAD2B	Q9ULI0	1458 aa		13.87	□□□□□ -0.19
MSL3-215	ENST00000482871	KIF12	Q96FN5	646 aa		13.84	□□□□□ -0.19
MSL3-215	ENST00000482871	NCAPD3	P42695	1498 aa		13.83	□□□□□ -0.2
MSL3-215	ENST00000482871	MAP3K13	O43283	966 aa		13.83	□□□□□ -0.2
MSL3-215	ENST00000482871	PEG3	Q9GZU2	1588 aa		13.82	□□□□□ -0.2
MSL3-215	ENST00000482871	RSF1	Q96T23	1441 aa	Predicted RBP	13.81	□□□□□ -0.2
MSL3-215	ENST00000482871	CHRM1	P11229	460 aa	Predicted RBP	13.81	□□□□□ -0.2
MSL3-215	ENST00000482871	PCDHB13	Q9Y5F0	798 aa		13.81	□□□□□ -0.2
MSL3-215	ENST00000482871	WIZ	O95785	1651 aa		13.81	□□□□□ -0.2
MSL3-215	ENST00000482871	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	13.78	□□□□□ -0.2
MSL3-215	ENST00000482871	BAZ1B	Q9UIG0	1483 aa	Known RBP	13.78	□□□□□ -0.2
MSL3-215	ENST00000482871	HMGXB3	Q12766	1538 aa		13.77	□□□□□ -0.21
MSL3-215	ENST00000482871	MS4A3	Q96HJ5	214 aa		13.76	□□□□□ -0.21
MSL3-215	ENST00000482871	GABBR2	O75899	941 aa		13.75	□□□□□ -0.21
MSL3-215	ENST00000482871	PCDHB8	Q9UN66	801 aa		13.75	□□□□□ -0.21
MSL3-215	ENST00000482871	RGL2	O15211	777 aa		13.74	□□□□□ -0.21
MSL3-215	ENST00000482871	GALR2	O43603	387 aa	Predicted RBP	13.74	□□□□□ -0.21
MSL3-215	ENST00000482871	CLCN6	P51797	869 aa		13.74	□□□□□ -0.21
MSL3-215	ENST00000482871	CFAP44	Q96MT7	982 aa		13.74	□□□□□ -0.21
MSL3-215	ENST00000482871	IFNL1	Q8IU54	200 aa		13.73	□□□□□ -0.21
MSL3-215	ENST00000482871	SGIP1	Q9BQI5	828 aa		13.73	□□□□□ -0.21
MSL3-215	ENST00000482871	ZNF467	Q7Z7K2	595 aa	Predicted RBP	13.72	□□□□□ -0.21
MSL3-215	ENST00000482871	RNF25	Q96BH1	459 aa	Predicted RBP	13.71	□□□□□ -0.21
MSL3-215	ENST00000482871	RIOK3	O14730	519 aa	Known RBP	13.7	□□□□□ -0.22
MSL3-215	ENST00000482871	SUPT5H	O00267	1087 aa	Known RBP	13.67	□□□□□ -0.22
MSL3-215	ENST00000482871	TOP2A	P11388	1531 aa	Known RBP	13.64	□□□□□ -0.23
MSL3-215	ENST00000482871	TRPC6	Q9Y210	931 aa		13.64	□□□□□ -0.23
MSL3-215	ENST00000482871	SPRYD3	Q8NCJ5	442 aa		13.62	□□□□□ -0.23
MSL3-215	ENST00000482871	VGF	O15240	615 aa	Predicted RBP	13.61	□□□□□ -0.23
MSL3-215	ENST00000482871	PSEN1	P49768	467 aa		13.6	□□□□□ -0.23
MSL3-215	ENST00000482871	PDAP1	Q13442	181 aa	Known RBP	13.6	□□□□□ -0.23
MSL3-215	ENST00000482871	DCBLD2	Q96PD2	775 aa		13.59	□□□□□ -0.23
MSL3-215	ENST00000482871	TSHZ2	Q9NRE2	1034 aa		13.59	□□□□□ -0.23
MSL3-215	ENST00000482871	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	13.56	□□□□□ -0.24
MSL3-215	ENST00000482871	ZFP91	Q96JP5	570 aa	Predicted RBP	13.56	□□□□□ -0.24
MSL3-215	ENST00000482871	TMEM106C	Q9BVX2	250 aa		13.56	□□□□□ -0.24
MSL3-215	ENST00000482871	TIE1	P35590	1138 aa		13.55	□□□□□ -0.24
MSL3-215	ENST00000482871	BMP2K	Q9NSY1	1161 aa	Predicted RBP	13.54	□□□□□ -0.24
MSL3-215	ENST00000482871	STK25	O00506	426 aa		13.52	□□□□□ -0.25
MSL3-215	ENST00000482871	TTLL13P	A6NNM8	815 aa		13.51	□□□□□ -0.25
MSL3-215	ENST00000482871	CHGA	P10645	457 aa	Known RBP	13.51	□□□□□ -0.25
MSL3-215	ENST00000482871	STK24	Q9Y6E0	443 aa		13.5	□□□□□ -0.25
MSL3-215	ENST00000482871	CCDC88B	A6NC98	1476 aa		13.49	□□□□□ -0.25
MSL3-215	ENST00000482871	BCL11B	Q9C0K0	894 aa	Predicted RBP	13.49	□□□□□ -0.25
MSL3-215	ENST00000482871	ATMIN	O43313	823 aa	Predicted RBP	13.47	□□□□□ -0.25
MSL3-215	ENST00000482871	ATN1	P54259	1190 aa	Predicted RBP	13.47	□□□□□ -0.25
MSL3-215	ENST00000482871	NES	P48681	1621 aa		13.46	□□□□□ -0.25
MSL3-215	ENST00000482871	GOLGA2	Q08379	1002 aa		13.46	□□□□□ -0.25
MSL3-215	ENST00000482871	ASTL	Q6HA08	431 aa	Predicted RBP	13.46	□□□□□ -0.25
MSL3-215	ENST00000482871	CADPS	Q9ULU8	1353 aa		13.45	□□□□□ -0.26
MSL3-215	ENST00000482871	LAMC3	Q9Y6N6	1575 aa		13.45	□□□□□ -0.26
MSL3-215	ENST00000482871	NBR1	Q14596	966 aa		13.45	□□□□□ -0.26
MSL3-215	ENST00000482871	CABP2	Q9NPB3	220 aa		13.45	□□□□□ -0.26
MSL3-215	ENST00000482871	POTEI	P0CG38	1075 aa		13.44	□□□□□ -0.26
MSL3-215	ENST00000482871	DNAJC5	Q9H3Z4	198 aa		13.44	□□□□□ -0.26
MSL3-215	ENST00000482871	TRIM35	Q9UPQ4	493 aa		13.44	□□□□□ -0.26
MSL3-215	ENST00000482871	HS6ST3	Q8IZP7	471 aa		13.42	□□□□□ -0.26
MSL3-215	ENST00000482871	PELP1	Q8IZL8	1130 aa	Known RBP	13.39	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 91 ms