RNA–Protein interactions for RNA: ENST00000480614.1

VEGFA-212, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best)

Gene VEGFA, Length 12,167 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-212ENST00000480614 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.5□□□□□ -0.411e-12■■□□□ 14.3
VEGFA-212ENST00000480614 CFAP53Q96M91 514 aa12.49□□□□□ -0.41
VEGFA-212ENST00000480614 CHMP4BQ9H444 224 aaKnown RBP12.49□□□□□ -0.41
VEGFA-212ENST00000480614 SCAF1Q9H7N4 1312 aaKnown RBP12.47□□□□□ -0.41
VEGFA-212ENST00000480614 GOLGA6L6A8MZA4 724 aa12.47□□□□□ -0.41
VEGFA-212ENST00000480614 PPP1R15AO75807 674 aaPredicted RBP12.47□□□□□ -0.41
VEGFA-212ENST00000480614 NRDCO43847 1150 aa12.47□□□□□ -0.41
VEGFA-212ENST00000480614 PTMAP06454 111 aaKnown RBP12.47□□□□□ -0.41
VEGFA-212ENST00000480614 PLPPR3Q6T4P5 718 aa12.45□□□□□ -0.42
VEGFA-212ENST00000480614 A0A0G2JS52 829 aa12.44□□□□□ -0.42
VEGFA-212ENST00000480614 EEA1Q15075 1411 aa12.44□□□□□ -0.42
VEGFA-212ENST00000480614 ARXQ96QS3 562 aa12.44□□□□□ -0.42
VEGFA-212ENST00000480614 EIF4G2P78344 907 aaKnown RBP eCLIP12.44□□□□□ -0.42
VEGFA-212ENST00000480614 C14orf37Q86TY3 774 aa12.43□□□□□ -0.42
VEGFA-212ENST00000480614 SALL2Q9Y467 1007 aaPredicted RBP12.42□□□□□ -0.42
VEGFA-212ENST00000480614 FTSJ3Q8IY81 847 aaKnown RBP12.42□□□□□ -0.42
VEGFA-212ENST00000480614 CLIP1P30622 1438 aa12.42□□□□□ -0.42
VEGFA-212ENST00000480614 RB1CC1Q8TDY2 1594 aa12.41□□□□□ -0.42
VEGFA-212ENST00000480614 ERICH6BQ5W0A0 696 aa12.4□□□□□ -0.42
VEGFA-212ENST00000480614 KDM2AQ9Y2K7 1162 aa12.4□□□□□ -0.42
VEGFA-212ENST00000480614 MS4A1P11836 297 aa12.4□□□□□ -0.42
VEGFA-212ENST00000480614 CHIC2Q9UKJ5 165 aa12.38□□□□□ -0.43
VEGFA-212ENST00000480614 CHMP7Q8WUX9 453 aaPredicted RBP12.38□□□□□ -0.43
VEGFA-212ENST00000480614 PPM1GO15355 546 aaPredicted RBP12.38□□□□□ -0.43
VEGFA-212ENST00000480614 KAT6BQ8WYB5 2073 aa12.38□□□□□ -0.43
VEGFA-212ENST00000480614 KNSTRNQ9Y448 316 aa12.37□□□□□ -0.43
VEGFA-212ENST00000480614 L1TD1Q5T7N2 865 aaKnown RBP12.36□□□□□ -0.43
VEGFA-212ENST00000480614 PNNQ9H307 717 aaKnown RBP12.36□□□□□ -0.43
VEGFA-212ENST00000480614 DNTTIP2Q5QJE6 756 aaKnown RBP12.36□□□□□ -0.43
VEGFA-212ENST00000480614 ZCCHC6Q5VYS8 1495 aaKnown RBP12.35□□□□□ -0.43
VEGFA-212ENST00000480614 GOLGA3Q08378 1498 aa12.35□□□□□ -0.43
VEGFA-212ENST00000480614 HAP1P54257 671 aaPredicted RBP12.34□□□□□ -0.43
VEGFA-212ENST00000480614 CHAF1AQ13111 956 aaPredicted RBP12.34□□□□□ -0.43
VEGFA-212ENST00000480614 CFAP44Q96MT7 982 aa12.33□□□□□ -0.44
VEGFA-212ENST00000480614 MAPK8IP3Q9UPT6 1336 aa12.32□□□□□ -0.44
VEGFA-212ENST00000480614 NUDCQ9Y266 331 aa12.32□□□□□ -0.44
VEGFA-212ENST00000480614 FGD1P98174 961 aa12.3□□□□□ -0.44
VEGFA-212ENST00000480614 PLEKHD1A6NEE1 506 aa12.3□□□□□ -0.44
VEGFA-212ENST00000480614 ZBTB7CA1YPR0 619 aa12.3□□□□□ -0.44
VEGFA-212ENST00000480614 NPHP1O15259 732 aa12.27□□□□□ -0.44
VEGFA-212ENST00000480614 GOLGA2Q08379 1002 aa12.27□□□□□ -0.45
VEGFA-212ENST00000480614 MCCP23508 829 aa12.26□□□□□ -0.45
VEGFA-212ENST00000480614 OS9Q13438 667 aaPredicted RBP12.25□□□□□ -0.45
VEGFA-212ENST00000480614 KCNJ4P48050 445 aa12.25□□□□□ -0.45
VEGFA-212ENST00000480614 HSP90AB1P08238 724 aaKnown RBP12.25□□□□□ -0.45
VEGFA-212ENST00000480614 KANK1Q14678 1352 aa12.25□□□□□ -0.45
VEGFA-212ENST00000480614 KIF27Q86VH2 1401 aa12.24□□□□□ -0.45
VEGFA-212ENST00000480614 GOLGA6L4A6NEF3 574 aa12.24□□□□□ -0.45
VEGFA-212ENST00000480614 NAP1L5Q96NT1 182 aaPredicted RBP12.24□□□□□ -0.45
VEGFA-212ENST00000480614 RRP7BPQ9NSQ0 103 aa12.24□□□□□ -0.45
VEGFA-212ENST00000480614 NACADO15069 1562 aa12.23□□□□□ -0.45
VEGFA-212ENST00000480614 ARID4BQ4LE39 1312 aaPredicted RBP12.23□□□□□ -0.45
VEGFA-212ENST00000480614 CEP164Q9UPV0 1460 aa12.22□□□□□ -0.45
VEGFA-212ENST00000480614 PTMSP20962 102 aa12.22□□□□□ -0.45
VEGFA-212ENST00000480614 HSCBQ8IWL3 235 aa12.22□□□□□ -0.45
VEGFA-212ENST00000480614 IRX6P78412 446 aaPredicted RBP12.22□□□□□ -0.45
VEGFA-212ENST00000480614 MIER1Q8N108 512 aa12.21□□□□□ -0.45
VEGFA-212ENST00000480614 FHAD1B1AJZ9 1412 aa12.21□□□□□ -0.46
VEGFA-212ENST00000480614 PPP4R2Q9NY27 417 aa12.21□□□□□ -0.46
VEGFA-212ENST00000480614 POGKQ9P215 609 aa12.21□□□□□ -0.46
VEGFA-212ENST00000480614 KIAA2012Q0VF49 1180 aa12.2□□□□□ -0.46
VEGFA-212ENST00000480614 CEP162Q5TB80 1403 aa12.2□□□□□ -0.46
VEGFA-212ENST00000480614 BAZ1BQ9UIG0 1483 aaKnown RBP12.19□□□□□ -0.46
VEGFA-212ENST00000480614 CFDP1Q9UEE9 299 aaPredicted RBP12.19□□□□□ -0.46
VEGFA-212ENST00000480614 HDGFP51858 240 aaKnown RBP12.19□□□□□ -0.46
VEGFA-212ENST00000480614 TULP1O00294 542 aaPredicted RBP12.18□□□□□ -0.46
VEGFA-212ENST00000480614 CARD11Q9BXL7 1154 aa12.18□□□□□ -0.46
VEGFA-212ENST00000480614 CHMP4AQ9BY43 222 aa12.17□□□□□ -0.46
VEGFA-212ENST00000480614 NOP58Q9Y2X3 529 aaKnown RBP12.17□□□□□ -0.46
VEGFA-212ENST00000480614 KCNH8Q96L42 1107 aa12.16□□□□□ -0.46
VEGFA-212ENST00000480614 LAS1LQ9Y4W2 734 aaKnown RBP12.16□□□□□ -0.46
VEGFA-212ENST00000480614 MSNP26038 577 aaKnown RBP12.15□□□□□ -0.46
VEGFA-212ENST00000480614 PLEKHG5O94827 1062 aa12.15□□□□□ -0.47
VEGFA-212ENST00000480614 NAP1L2Q9ULW6 460 aaPredicted RBP12.15□□□□□ -0.47
VEGFA-212ENST00000480614 CALD1Q05682 793 aaKnown RBP12.14□□□□□ -0.47
VEGFA-212ENST00000480614 CCDC34Q96HJ3 373 aa12.14□□□□□ -0.47
VEGFA-212ENST00000480614 RGL3Q3MIN7 710 aa12.14□□□□□ -0.47
VEGFA-212ENST00000480614 ERCC6Q03468 1493 aa12.14□□□□□ -0.47
VEGFA-212ENST00000480614 KIAA1211Q6ZU35 1233 aa12.13□□□□□ -0.47
VEGFA-212ENST00000480614 USP35Q9P2H5 1018 aa12.13□□□□□ -0.47
VEGFA-212ENST00000480614 HTATSF1O43719 755 aaKnown RBP12.13□□□□□ -0.47
VEGFA-212ENST00000480614 GNL2Q13823 731 aaKnown RBP12.13□□□□□ -0.47
VEGFA-212ENST00000480614 CCNB3Q8WWL7 1395 aa12.13□□□□□ -0.47
VEGFA-212ENST00000480614 PLCB2Q00722 1185 aa12.12□□□□□ -0.47
VEGFA-212ENST00000480614 WRNQ14191 1432 aaPredicted RBP eCLIP12.12□□□□□ -0.479e-10■□□□□ 8.8
VEGFA-212ENST00000480614 IPO8O15397 1037 aaKnown RBP12.12□□□□□ -0.47
VEGFA-212ENST00000480614 TMF1P82094 1093 aa12.12□□□□□ -0.47
VEGFA-212ENST00000480614 RGS3P49796 1198 aa12.11□□□□□ -0.47
VEGFA-212ENST00000480614 CLSTN1O94985 981 aa12.11□□□□□ -0.47
VEGFA-212ENST00000480614 GBP4Q96PP9 640 aa12.11□□□□□ -0.47
VEGFA-212ENST00000480614 TPRNQ4KMQ1 711 aa12.1□□□□□ -0.47
VEGFA-212ENST00000480614 DRC7Q8IY82 874 aa12.1□□□□□ -0.47
VEGFA-212ENST00000480614 FRAT1Q92837 279 aaPredicted RBP12.1□□□□□ -0.47
VEGFA-212ENST00000480614 SYAP1Q96A49 352 aaPredicted RBP12.1□□□□□ -0.47
VEGFA-212ENST00000480614 NOC3LQ8WTT2 800 aaKnown RBP12.09□□□□□ -0.47
VEGFA-212ENST00000480614 SUPT16HQ9Y5B9 1047 aaKnown RBP12.09□□□□□ -0.47
VEGFA-212ENST00000480614 GPATCH3Q96I76 525 aa12.09□□□□□ -0.47
VEGFA-212ENST00000480614 LMOD2Q6P5Q4 547 aa12.09□□□□□ -0.47
VEGFA-212ENST00000480614 TNIKQ9UKE5 1360 aa12.08□□□□□ -0.48
VEGFA-212ENST00000480614 HDAC5Q9UQL6 1122 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms