RNA–Protein interactions for RNA: ENST00000477288.5

VARS2-209, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

TSL 2

Gene VARS2, Length 6,054 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-209ENST00000477288 CHMP7Q8WUX9 453 aaPredicted RBP24.73■■□□□ 1.55
VARS2-209ENST00000477288 MRS2Q9HD23 443 aa24.67■■□□□ 1.54
VARS2-209ENST00000477288 RB1CC1Q8TDY2 1594 aa24.67■■□□□ 1.54
VARS2-209ENST00000477288 HAP1P54257 671 aaPredicted RBP24.66■■□□□ 1.54
VARS2-209ENST00000477288 IRX6P78412 446 aaPredicted RBP24.65■■□□□ 1.54
VARS2-209ENST00000477288 KCNH8Q96L42 1107 aa24.64■■□□□ 1.54
VARS2-209ENST00000477288 MTUS2Q5JR59 1369 aa24.62■■□□□ 1.53
VARS2-209ENST00000477288 DCAF1Q9Y4B6 1507 aa24.58■■□□□ 1.53
VARS2-209ENST00000477288 ARID4BQ4LE39 1312 aaPredicted RBP24.58■■□□□ 1.53
VARS2-209ENST00000477288 TULP1O00294 542 aaPredicted RBP24.57■■□□□ 1.52
VARS2-209ENST00000477288 RSF1Q96T23 1441 aaPredicted RBP24.54■■□□□ 1.52
VARS2-209ENST00000477288 NCLP19338 710 aaKnown RBP24.54■■□□□ 1.52
VARS2-209ENST00000477288 HIRIP3Q9BW71 556 aaPredicted RBP24.54■■□□□ 1.52
VARS2-209ENST00000477288 RRP7BPQ9NSQ0 103 aa24.51■■□□□ 1.51
VARS2-209ENST00000477288 TPRNQ4KMQ1 711 aa24.51■■□□□ 1.51
VARS2-209ENST00000477288 NACADO15069 1562 aa24.48■■□□□ 1.51
VARS2-209ENST00000477288 RGL3Q3MIN7 710 aa24.46■■□□□ 1.51
VARS2-209ENST00000477288 PPM1GO15355 546 aaPredicted RBP24.45■■□□□ 1.5
VARS2-209ENST00000477288 TRIM44Q96DX7 344 aaPredicted RBP24.44■■□□□ 1.5
VARS2-209ENST00000477288 EIF4G2P78344 907 aaKnown RBP eCLIP24.41■■□□□ 1.5
VARS2-209ENST00000477288 BECN1Q14457 450 aa24.41■■□□□ 1.5
VARS2-209ENST00000477288 PLEKHD1A6NEE1 506 aa24.39■■□□□ 1.5
VARS2-209ENST00000477288 SENP3-EIF4A1A0A087X0R7 540 aa24.39■■□□□ 1.49
VARS2-209ENST00000477288 ZRSR1Q15695 479 aaKnown RBP24.39■■□□□ 1.49
VARS2-209ENST00000477288 LMOD2Q6P5Q4 547 aa24.38■■□□□ 1.49
VARS2-209ENST00000477288 CFAP53Q96M91 514 aa24.37■■□□□ 1.49
VARS2-209ENST00000477288 GOLGA6L22H0YM25 854 aa24.36■■□□□ 1.49
VARS2-209ENST00000477288 TAOK2Q9UL54 1235 aa24.36■■□□□ 1.49
VARS2-209ENST00000477288 CLIP1P30622 1438 aa24.36■■□□□ 1.49
VARS2-209ENST00000477288 PTMAP06454 111 aaKnown RBP24.35■■□□□ 1.49
VARS2-209ENST00000477288 DDRGK1Q96HY6 314 aa24.34■■□□□ 1.49
VARS2-209ENST00000477288 NPHP1O15259 732 aa24.33■■□□□ 1.49
VARS2-209ENST00000477288 EEA1Q15075 1411 aa24.33■■□□□ 1.48
VARS2-209ENST00000477288 LAS1LQ9Y4W2 734 aaKnown RBP24.31■■□□□ 1.48
VARS2-209ENST00000477288 BAZ1BQ9UIG0 1483 aaKnown RBP24.27■■□□□ 1.48
VARS2-209ENST00000477288 KNSTRNQ9Y448 316 aa24.27■■□□□ 1.48
VARS2-209ENST00000477288 DNTTIP2Q5QJE6 756 aaKnown RBP24.27■■□□□ 1.48
VARS2-209ENST00000477288 CASC1Q6TDU7 716 aa24.26■■□□□ 1.47
VARS2-209ENST00000477288 WRNQ14191 1432 aaPredicted RBP eCLIP24.26■■□□□ 1.47
VARS2-209ENST00000477288 FTSJ3Q8IY81 847 aaKnown RBP24.24■■□□□ 1.47
VARS2-209ENST00000477288 NEUROD2Q15784 382 aa24.23■■□□□ 1.47
VARS2-209ENST00000477288 MIER1Q8N108 512 aa24.23■■□□□ 1.47
VARS2-209ENST00000477288 CDCA8Q53HL2 280 aa24.22■■□□□ 1.47
VARS2-209ENST00000477288 POGKQ9P215 609 aa24.22■■□□□ 1.47
VARS2-209ENST00000477288 GOLGA3Q08378 1498 aa24.2■■□□□ 1.46
VARS2-209ENST00000477288 ANP32EQ9BTT0 268 aa24.2■■□□□ 1.46
VARS2-209ENST00000477288 MAPK8IP3Q9UPT6 1336 aa24.2■■□□□ 1.46
VARS2-209ENST00000477288 CFDP1Q9UEE9 299 aaPredicted RBP24.19■■□□□ 1.46
VARS2-209ENST00000477288 TNNT2P45379 298 aaPredicted RBP24.16■■□□□ 1.46
VARS2-209ENST00000477288 PLCB2Q00722 1185 aa24.16■■□□□ 1.46
VARS2-209ENST00000477288 CARD11Q9BXL7 1154 aa24.15■■□□□ 1.46
VARS2-209ENST00000477288 CEP162Q5TB80 1403 aa24.14■■□□□ 1.46
VARS2-209ENST00000477288 NUDCQ9Y266 331 aa24.11■■□□□ 1.45
VARS2-209ENST00000477288 MYO15BQ96JP2 1530 aa24.11■■□□□ 1.45
VARS2-209ENST00000477288 BAZ1AQ9NRL2 1556 aaPredicted RBP24.11■■□□□ 1.45
VARS2-209ENST00000477288 OS9Q13438 667 aaPredicted RBP24.1■■□□□ 1.45
VARS2-209ENST00000477288 KIF27Q86VH2 1401 aa24.1■■□□□ 1.45
VARS2-209ENST00000477288 NCBP3Q53F19 620 aaKnown RBP24.09■■□□□ 1.45
VARS2-209ENST00000477288 NAP1L2Q9ULW6 460 aaPredicted RBP24.08■■□□□ 1.45
VARS2-209ENST00000477288 TRHP20396 242 aaPredicted RBP24.06■■□□□ 1.44
VARS2-209ENST00000477288 FGD1P98174 961 aa24.06■■□□□ 1.44
VARS2-209ENST00000477288 GOLGA2Q08379 1002 aa24.05■■□□□ 1.44
VARS2-209ENST00000477288 FRAT1Q92837 279 aaPredicted RBP24.05■■□□□ 1.44
VARS2-209ENST00000477288 CECR2Q9BXF3 1484 aa24.04■■□□□ 1.44
VARS2-209ENST00000477288 U2SURPO15042 1029 aaKnown RBP24.04■■□□□ 1.44
VARS2-209ENST00000477288 TNIKQ9UKE5 1360 aa24.03■■□□□ 1.44
VARS2-209ENST00000477288 RGS3P49796 1198 aa24.02■■□□□ 1.44
VARS2-209ENST00000477288 NAP1L5Q96NT1 182 aaPredicted RBP24.02■■□□□ 1.44
VARS2-209ENST00000477288 CEP164Q9UPV0 1460 aa24■■□□□ 1.43
VARS2-209ENST00000477288 MLECQ14165 292 aa24■■□□□ 1.43
VARS2-209ENST00000477288 SOX12O15370 315 aa24■■□□□ 1.43
VARS2-209ENST00000477288 CC2D1BQ5T0F9 858 aaKnown RBP23.99■■□□□ 1.43
VARS2-209ENST00000477288 CLSTN1O94985 981 aa23.99■■□□□ 1.43
VARS2-209ENST00000477288 KCNJ4P48050 445 aa23.99■■□□□ 1.43
VARS2-209ENST00000477288 SUPT16HQ9Y5B9 1047 aaKnown RBP23.99■■□□□ 1.43
VARS2-209ENST00000477288 GOLGA6L6A8MZA4 724 aa23.97■■□□□ 1.43
VARS2-209ENST00000477288 HSP90AB1P08238 724 aaKnown RBP23.97■■□□□ 1.43
VARS2-209ENST00000477288 RTN4Q9NQC3 1192 aaKnown RBP23.96■■□□□ 1.43
VARS2-209ENST00000477288 ERCC6Q03468 1493 aa23.95■■□□□ 1.42
VARS2-209ENST00000477288 CHMP4BQ9H444 224 aaKnown RBP23.89■■□□□ 1.41
VARS2-209ENST00000477288 ERICH6BQ5W0A0 696 aa23.88■■□□□ 1.41
VARS2-209ENST00000477288 PNNQ9H307 717 aaKnown RBP23.88■■□□□ 1.41
VARS2-209ENST00000477288 ISY1Q9ULR0 285 aaKnown RBP23.87■■□□□ 1.41
VARS2-209ENST00000477288 SRPK2P78362 688 aaKnown RBP23.85■■□□□ 1.41
VARS2-209ENST00000477288 GOLGA6L4A6NEF3 574 aa23.85■■□□□ 1.41
VARS2-209ENST00000477288 SAFB2Q14151 953 aaKnown RBP eCLIP23.85■■□□□ 1.41
VARS2-209ENST00000477288 HDGFP51858 240 aaKnown RBP23.84■■□□□ 1.41
VARS2-209ENST00000477288 NRDCO43847 1150 aa23.83■■□□□ 1.4
VARS2-209ENST00000477288 MS4A1P11836 297 aa23.82■■□□□ 1.4
VARS2-209ENST00000477288 KANK1Q14678 1352 aa23.82■■□□□ 1.4
VARS2-209ENST00000477288 SIN3AQ96ST3 1273 aa23.8■■□□□ 1.4
VARS2-209ENST00000477288 TMF1P82094 1093 aa23.79■■□□□ 1.4
VARS2-209ENST00000477288 DCAF11Q8TEB1 546 aa23.79■■□□□ 1.4
VARS2-209ENST00000477288 CCNB3Q8WWL7 1395 aa23.78■■□□□ 1.4
VARS2-209ENST00000477288 SPRYD3Q8NCJ5 442 aa23.77■■□□□ 1.4
VARS2-209ENST00000477288 DRC7Q8IY82 874 aa23.74■■□□□ 1.39
VARS2-209ENST00000477288 RTF1Q92541 710 aaKnown RBP23.74■■□□□ 1.39
VARS2-209ENST00000477288 MORC1Q86VD1 984 aa23.73■■□□□ 1.39
VARS2-209ENST00000477288 HSCBQ8IWL3 235 aa23.73■■□□□ 1.39
VARS2-209ENST00000477288 PPP4R2Q9NY27 417 aa23.73■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms