RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 ATMINO43313 823 aaPredicted RBP14.86□□□□□ -0.03
CCDC88A-213ENST00000476903 POTEJP0CG39 1038 aa14.84□□□□□ -0.03
CCDC88A-213ENST00000476903 CCDC61Q9Y6R9 512 aa14.81□□□□□ -0.04
CCDC88A-213ENST00000476903 METRNQ9UJH8 293 aa14.8□□□□□ -0.04
CCDC88A-213ENST00000476903 ABCC9O60706 1549 aa14.8□□□□□ -0.04
CCDC88A-213ENST00000476903 TSPYL2Q9H2G4 693 aaPredicted RBP14.78□□□□□ -0.04
CCDC88A-213ENST00000476903 PLSCR2Q9NRY7 297 aa14.78□□□□□ -0.04
CCDC88A-213ENST00000476903 C7P10643 843 aa14.76□□□□□ -0.05
CCDC88A-213ENST00000476903 SLC39A7Q92504 469 aa14.76□□□□□ -0.05
CCDC88A-213ENST00000476903 KIF12Q96FN5 646 aa14.74□□□□□ -0.05
CCDC88A-213ENST00000476903 ATN1P54259 1190 aaPredicted RBP14.71□□□□□ -0.05
CCDC88A-213ENST00000476903 POTEMA6NI47 508 aa14.7□□□□□ -0.06
CCDC88A-213ENST00000476903 TRPC6Q9Y210 931 aa14.68□□□□□ -0.06
CCDC88A-213ENST00000476903 POTEFA5A3E0 1075 aa14.66□□□□□ -0.06
CCDC88A-213ENST00000476903 POTEGQ6S5H5 508 aa14.65□□□□□ -0.06
CCDC88A-213ENST00000476903 RASEFQ8IZ41 740 aa14.64□□□□□ -0.07
CCDC88A-213ENST00000476903 BMP2KQ9NSY1 1161 aaPredicted RBP14.64□□□□□ -0.07
CCDC88A-213ENST00000476903 MAP3K13O43283 966 aa14.61□□□□□ -0.07
CCDC88A-213ENST00000476903 LCE2DQ5TA82 110 aaPredicted RBP14.61□□□□□ -0.07
CCDC88A-213ENST00000476903 MAMSTRQ6ZN01 415 aa14.58□□□□□ -0.08
CCDC88A-213ENST00000476903 MIER1Q8N108 512 aa14.58□□□□□ -0.08
CCDC88A-213ENST00000476903 TIE1P35590 1138 aa14.55□□□□□ -0.08
CCDC88A-213ENST00000476903 TTLL13PA6NNM8 815 aa14.49□□□□□ -0.09
CCDC88A-213ENST00000476903 PLEKHG5O94827 1062 aa14.48□□□□□ -0.09
CCDC88A-213ENST00000476903 COLQQ9Y215 455 aaPredicted RBP14.48□□□□□ -0.09
CCDC88A-213ENST00000476903 SCUBE2Q9NQ36 999 aa14.47□□□□□ -0.09
CCDC88A-213ENST00000476903 NUBP1P53384 320 aa14.45□□□□□ -0.1
CCDC88A-213ENST00000476903 PCDH10Q9P2E7 1040 aa14.45□□□□□ -0.1
CCDC88A-213ENST00000476903 FAM163AQ96GL9 167 aaPredicted RBP14.42□□□□□ -0.1
CCDC88A-213ENST00000476903 SGIP1Q9BQI5 828 aa14.42□□□□□ -0.1
CCDC88A-213ENST00000476903 PLCD3Q8N3E9 789 aa14.39□□□□□ -0.11
CCDC88A-213ENST00000476903 TRIM35Q9UPQ4 493 aa14.37□□□□□ -0.11
CCDC88A-213ENST00000476903 PCDHB13Q9Y5F0 798 aa14.36□□□□□ -0.11
CCDC88A-213ENST00000476903 IER5LQ5T953 404 aa14.34□□□□□ -0.11
CCDC88A-213ENST00000476903 IFNL1Q8IU54 200 aa14.34□□□□□ -0.11
CCDC88A-213ENST00000476903 SEC24BO95487 1268 aa14.32□□□□□ -0.12
CCDC88A-213ENST00000476903 ZBTB47Q9UFB7 747 aaPredicted RBP14.28□□□□□ -0.12
CCDC88A-213ENST00000476903 FAM212AQ96EL1 285 aa14.22□□□□□ -0.13
CCDC88A-213ENST00000476903 TMEM106CQ9BVX2 250 aa14.22□□□□□ -0.13
CCDC88A-213ENST00000476903 RB1CC1Q8TDY2 1594 aa14.21□□□□□ -0.14
CCDC88A-213ENST00000476903 IRX5P78411 483 aaPredicted RBP14.2□□□□□ -0.14
CCDC88A-213ENST00000476903 FKBP8Q14318 412 aa14.18□□□□□ -0.14
CCDC88A-213ENST00000476903 SLAIN1Q8ND83 568 aa14.15□□□□□ -0.14
CCDC88A-213ENST00000476903 NACADO15069 1562 aa14.13□□□□□ -0.15
CCDC88A-213ENST00000476903 ST18O60284 1047 aa14.12□□□□□ -0.15
CCDC88A-213ENST00000476903 CDAN1Q8IWY9 1227 aa14.12□□□□□ -0.15
CCDC88A-213ENST00000476903 PLCG2P16885 1265 aa14.11□□□□□ -0.15
CCDC88A-213ENST00000476903 PYGBP11216 843 aa14.09□□□□□ -0.15
CCDC88A-213ENST00000476903 DCAF8Q5TAQ9 597 aa14.07□□□□□ -0.16
CCDC88A-213ENST00000476903 OCEL1Q9H607 264 aa14.06□□□□□ -0.16
CCDC88A-213ENST00000476903 PCDHB8Q9UN66 801 aa14.06□□□□□ -0.16
CCDC88A-213ENST00000476903 DCAF8L2P0C7V8 631 aa14.04□□□□□ -0.16
CCDC88A-213ENST00000476903 MYO15BQ96JP2 1530 aa14□□□□□ -0.17
CCDC88A-213ENST00000476903 PDCD7Q8N8D1 485 aaKnown RBP13.95□□□□□ -0.18
CCDC88A-213ENST00000476903 FBXO3Q9UK99 471 aa13.94□□□□□ -0.18
CCDC88A-213ENST00000476903 UNC13AQ9UPW8 1703 aa13.92□□□□□ -0.18
CCDC88A-213ENST00000476903 ZCCHC6Q5VYS8 1495 aaKnown RBP13.92□□□□□ -0.18
CCDC88A-213ENST00000476903 TMEM121BQ9BXQ6 578 aaPredicted RBP13.9□□□□□ -0.18
CCDC88A-213ENST00000476903 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.9□□□□□ -0.18
CCDC88A-213ENST00000476903 CHRM1P11229 460 aaPredicted RBP13.87□□□□□ -0.19
CCDC88A-213ENST00000476903 DCAF1Q9Y4B6 1507 aa13.86□□□□□ -0.19
CCDC88A-213ENST00000476903 VASPP50552 380 aaPredicted RBP13.86□□□□□ -0.19
CCDC88A-213ENST00000476903 SNPHO15079 494 aa13.85□□□□□ -0.19
CCDC88A-213ENST00000476903 GSE1Q14687 1217 aa13.85□□□□□ -0.19
CCDC88A-213ENST00000476903 ZNF467Q7Z7K2 595 aaPredicted RBP13.85□□□□□ -0.19
CCDC88A-213ENST00000476903 MARVELD3Q96A59 401 aa13.82□□□□□ -0.2
CCDC88A-213ENST00000476903 ILDR1Q86SU0 546 aaPredicted RBP13.81□□□□□ -0.2
CCDC88A-213ENST00000476903 SPNS2Q8IVW8 549 aa13.81□□□□□ -0.2
CCDC88A-213ENST00000476903 MMRN1Q13201 1228 aa13.8□□□□□ -0.2
CCDC88A-213ENST00000476903 KLHL34Q8N239 644 aa13.79□□□□□ -0.2
CCDC88A-213ENST00000476903 PSEN1P49768 467 aa13.78□□□□□ -0.2
CCDC88A-213ENST00000476903 MKRN3Q13064 507 aaKnown RBP13.77□□□□□ -0.21
CCDC88A-213ENST00000476903 L3MBTL3Q96JM7 780 aaPredicted RBP13.77□□□□□ -0.21
CCDC88A-213ENST00000476903 BICRAQ9NZM4 1560 aa13.75□□□□□ -0.21
CCDC88A-213ENST00000476903 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.74□□□□□ -0.217e-12■■■■■ 55.8
CCDC88A-213ENST00000476903 POTEB3A0JP26 581 aa13.73□□□□□ -0.21
CCDC88A-213ENST00000476903 POTEBQ6S5H4 581 aa13.73□□□□□ -0.21
CCDC88A-213ENST00000476903 C3orf67Q6ZVT6 689 aa13.72□□□□□ -0.21
CCDC88A-213ENST00000476903 GOLGA2Q08379 1002 aa13.71□□□□□ -0.21
CCDC88A-213ENST00000476903 DPY19L2Q6NUT2 758 aa13.69□□□□□ -0.22
CCDC88A-213ENST00000476903 PDAP1Q13442 181 aaKnown RBP13.67□□□□□ -0.22
CCDC88A-213ENST00000476903 SCRIBQ14160 1630 aa13.67□□□□□ -0.22
CCDC88A-213ENST00000476903 EMP3P54852 163 aa13.65□□□□□ -0.22
CCDC88A-213ENST00000476903 IFNLR1Q8IU57 520 aaPredicted RBP13.65□□□□□ -0.22
CCDC88A-213ENST00000476903 KRTAP3-3Q9BYR6 98 aa13.65□□□□□ -0.22
CCDC88A-213ENST00000476903 KRTAP3-2Q9BYR7 98 aa13.65□□□□□ -0.22
CCDC88A-213ENST00000476903 SHROOM4Q9ULL8 1493 aa13.62□□□□□ -0.23
CCDC88A-213ENST00000476903 HS3ST6Q96QI5 342 aa13.62□□□□□ -0.23
CCDC88A-213ENST00000476903 HOXB3P14651 431 aaPredicted RBP13.6□□□□□ -0.23
CCDC88A-213ENST00000476903 CABP2Q9NPB3 220 aa13.59□□□□□ -0.23
CCDC88A-213ENST00000476903 FAM205CA6NFA0 338 aa13.58□□□□□ -0.24
CCDC88A-213ENST00000476903 SPOCK2Q92563 424 aa13.58□□□□□ -0.24
CCDC88A-213ENST00000476903 BOLA1Q9Y3E2 137 aa13.56□□□□□ -0.24
CCDC88A-213ENST00000476903 CIZ1Q9ULV3 898 aaPredicted RBP13.53□□□□□ -0.24
CCDC88A-213ENST00000476903 HOXB1P14653 301 aaPredicted RBP13.47□□□□□ -0.25
CCDC88A-213ENST00000476903 EFCAB3Q8N7B9 438 aa13.43□□□□□ -0.26
CCDC88A-213ENST00000476903 EIF4G1Q04637 1599 aaKnown RBP13.41□□□□□ -0.26
CCDC88A-213ENST00000476903 G3V3G9 751 aa13.41□□□□□ -0.26
CCDC88A-213ENST00000476903 CC2D2AQ9P2K1 1620 aa13.41□□□□□ -0.26
CCDC88A-213ENST00000476903 TMEM92Q6UXU6 159 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms