RNA–Protein interactions for RNA: ENST00000475319.1

ECHDC1-215, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 2

Gene ECHDC1, Length 1,543 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-215ENST00000475319 PELP1Q8IZL8 1130 aaKnown RBP11.7□□□□□ -0.54
ECHDC1-215ENST00000475319 SLC24A1O60721 1099 aa11.66□□□□□ -0.54
ECHDC1-215ENST00000475319 POTEJP0CG39 1038 aa11.65□□□□□ -0.55
ECHDC1-215ENST00000475319 ASTLQ6HA08 431 aaPredicted RBP11.59□□□□□ -0.55
ECHDC1-215ENST00000475319 PHF12Q96QT6 1004 aa11.59□□□□□ -0.55
ECHDC1-215ENST00000475319 RTN4Q9NQC3 1192 aaKnown RBP11.59□□□□□ -0.55
ECHDC1-215ENST00000475319 ATMINO43313 823 aaPredicted RBP11.54□□□□□ -0.56
ECHDC1-215ENST00000475319 MMRN1Q13201 1228 aa11.51□□□□□ -0.57
ECHDC1-215ENST00000475319 CREBZFQ9NS37 354 aa11.51□□□□□ -0.57
ECHDC1-215ENST00000475319 AMER1Q5JTC6 1135 aaPredicted RBP11.5□□□□□ -0.57
ECHDC1-215ENST00000475319 NPM1P06748 294 aaKnown RBP eCLIP11.43□□□□□ -0.58
ECHDC1-215ENST00000475319 STAG3Q9UJ98 1225 aa11.43□□□□□ -0.58
ECHDC1-215ENST00000475319 SPNS2Q8IVW8 549 aa11.42□□□□□ -0.58
ECHDC1-215ENST00000475319 MS4A3Q96HJ5 214 aa11.42□□□□□ -0.58
ECHDC1-215ENST00000475319 ATN1P54259 1190 aaPredicted RBP11.33□□□□□ -0.6
ECHDC1-215ENST00000475319 ST18O60284 1047 aa11.3□□□□□ -0.6
ECHDC1-215ENST00000475319 POTEFA5A3E0 1075 aa11.26□□□□□ -0.61
ECHDC1-215ENST00000475319 SEC24BO95487 1268 aa11.24□□□□□ -0.61
ECHDC1-215ENST00000475319 FKBP8Q14318 412 aa11.23□□□□□ -0.61
ECHDC1-215ENST00000475319 SLAIN1Q8ND83 568 aa11.19□□□□□ -0.62
ECHDC1-215ENST00000475319 TMEM121BQ9BXQ6 578 aaPredicted RBP11.18□□□□□ -0.62
ECHDC1-215ENST00000475319 BMP2KQ9NSY1 1161 aaPredicted RBP11.15□□□□□ -0.62
ECHDC1-215ENST00000475319 TIE1P35590 1138 aa11.12□□□□□ -0.63
ECHDC1-215ENST00000475319 MNX1P50219 401 aaPredicted RBP11.12□□□□□ -0.63
ECHDC1-215ENST00000475319 COLQQ9Y215 455 aaPredicted RBP11.11□□□□□ -0.63
ECHDC1-215ENST00000475319 SNPHO15079 494 aa11.08□□□□□ -0.64
ECHDC1-215ENST00000475319 TSPYL2Q9H2G4 693 aaPredicted RBP11.08□□□□□ -0.64
ECHDC1-215ENST00000475319 IER5LQ5T953 404 aa11.06□□□□□ -0.64
ECHDC1-215ENST00000475319 KIF12Q96FN5 646 aa11.06□□□□□ -0.64
ECHDC1-215ENST00000475319 CCDC61Q9Y6R9 512 aa11.04□□□□□ -0.64
ECHDC1-215ENST00000475319 TRPC6Q9Y210 931 aa10.99□□□□□ -0.65
ECHDC1-215ENST00000475319 TTLL13PA6NNM8 815 aa10.98□□□□□ -0.65
ECHDC1-215ENST00000475319 MARVELD3Q96A59 401 aa10.98□□□□□ -0.65
ECHDC1-215ENST00000475319 MAP3K13O43283 966 aa10.93□□□□□ -0.66
ECHDC1-215ENST00000475319 MYT1Q01538 1121 aa10.93□□□□□ -0.66
ECHDC1-215ENST00000475319 TRIM35Q9UPQ4 493 aa10.93□□□□□ -0.66
ECHDC1-215ENST00000475319 PLCG2P16885 1265 aa10.89□□□□□ -0.67
ECHDC1-215ENST00000475319 EMP3P54852 163 aa10.88□□□□□ -0.67
ECHDC1-215ENST00000475319 KRTAP3-3Q9BYR6 98 aa10.86□□□□□ -0.67
ECHDC1-215ENST00000475319 KRTAP3-2Q9BYR7 98 aa10.86□□□□□ -0.67
ECHDC1-215ENST00000475319 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.84□□□□□ -0.67
ECHDC1-215ENST00000475319 HS3ST6Q96QI5 342 aa10.81□□□□□ -0.68
ECHDC1-215ENST00000475319 SGIP1Q9BQI5 828 aa10.79□□□□□ -0.68
ECHDC1-215ENST00000475319 SPDYE4A6NLX3 237 aa10.79□□□□□ -0.68
ECHDC1-215ENST00000475319 FAM205CA6NFA0 338 aa10.77□□□□□ -0.69
ECHDC1-215ENST00000475319 RNF166Q96A37 237 aaPredicted RBP10.76□□□□□ -0.69
ECHDC1-215ENST00000475319 IRX5P78411 483 aaPredicted RBP10.72□□□□□ -0.69
ECHDC1-215ENST00000475319 PCDHB13Q9Y5F0 798 aa10.72□□□□□ -0.69
ECHDC1-215ENST00000475319 POTEB3A0JP26 581 aa10.7□□□□□ -0.7
ECHDC1-215ENST00000475319 POTEBQ6S5H4 581 aa10.7□□□□□ -0.7
ECHDC1-215ENST00000475319 OCEL1Q9H607 264 aa10.7□□□□□ -0.7
ECHDC1-215ENST00000475319 TMEM106CQ9BVX2 250 aa10.68□□□□□ -0.7
ECHDC1-215ENST00000475319 PLEKHG5O94827 1062 aa10.67□□□□□ -0.7
ECHDC1-215ENST00000475319 TTBK1Q5TCY1 1321 aaPredicted RBP10.62□□□□□ -0.71
ECHDC1-215ENST00000475319 PLCB2Q00722 1185 aa10.62□□□□□ -0.71
ECHDC1-215ENST00000475319 RASEFQ8IZ41 740 aa10.61□□□□□ -0.71
ECHDC1-215ENST00000475319 MYT1LQ9UL68 1186 aa10.61□□□□□ -0.71
ECHDC1-215ENST00000475319 C3orf67Q6ZVT6 689 aa10.59□□□□□ -0.71
ECHDC1-215ENST00000475319 IFNL1Q8IU54 200 aa10.57□□□□□ -0.72
ECHDC1-215ENST00000475319 FBXO3Q9UK99 471 aa10.55□□□□□ -0.72
ECHDC1-215ENST00000475319 L3MBTL3Q96JM7 780 aaPredicted RBP10.52□□□□□ -0.73
ECHDC1-215ENST00000475319 PTGER2P43116 358 aa10.5□□□□□ -0.73
ECHDC1-215ENST00000475319 HAP1P54257 671 aaPredicted RBP10.48□□□□□ -0.73
ECHDC1-215ENST00000475319 ERBB3P21860 1342 aa10.47□□□□□ -0.73
ECHDC1-215ENST00000475319 MIER1Q8N108 512 aa10.46□□□□□ -0.74
ECHDC1-215ENST00000475319 DCAF8L2P0C7V8 631 aa10.43□□□□□ -0.74
ECHDC1-215ENST00000475319 VASPP50552 380 aaPredicted RBP10.43□□□□□ -0.74
ECHDC1-215ENST00000475319 ZNF710Q8N1W2 664 aa10.41□□□□□ -0.74
ECHDC1-215ENST00000475319 HOXB1P14653 301 aaPredicted RBP10.4□□□□□ -0.74
ECHDC1-215ENST00000475319 PROM2Q8N271 834 aa10.39□□□□□ -0.75
ECHDC1-215ENST00000475319 BCANQ96GW7 911 aa10.38□□□□□ -0.75
ECHDC1-215ENST00000475319 PRKCSHP14314 528 aaPredicted RBP10.38□□□□□ -0.75
ECHDC1-215ENST00000475319 IFNLR1Q8IU57 520 aaPredicted RBP10.38□□□□□ -0.75
ECHDC1-215ENST00000475319 PDCD7Q8N8D1 485 aaKnown RBP10.34□□□□□ -0.75
ECHDC1-215ENST00000475319 PLA2G2EQ9NZK7 142 aa10.34□□□□□ -0.75
ECHDC1-215ENST00000475319 FAM212AQ96EL1 285 aa10.33□□□□□ -0.76
ECHDC1-215ENST00000475319 ZBTB47Q9UFB7 747 aaPredicted RBP10.33□□□□□ -0.76
ECHDC1-215ENST00000475319 PKD2Q13563 968 aa10.32□□□□□ -0.76
ECHDC1-215ENST00000475319 HOXB3P14651 431 aaPredicted RBP10.31□□□□□ -0.76
ECHDC1-215ENST00000475319 GOLGA2Q08379 1002 aa10.31□□□□□ -0.76
ECHDC1-215ENST00000475319 MKRN3Q13064 507 aaKnown RBP10.31□□□□□ -0.76
ECHDC1-215ENST00000475319 DOK7Q18PE1 504 aa10.31□□□□□ -0.76
ECHDC1-215ENST00000475319 VARS2Q5ST30 1063 aaKnown RBP10.31□□□□□ -0.76
ECHDC1-215ENST00000475319 VSIG10Q8N0Z9 540 aa10.3□□□□□ -0.76
ECHDC1-215ENST00000475319 TAOK2Q9UL54 1235 aa10.3□□□□□ -0.76
ECHDC1-215ENST00000475319 ZNF687Q8N1G0 1237 aa10.29□□□□□ -0.76
ECHDC1-215ENST00000475319 RIMBP2O15034 1052 aa10.28□□□□□ -0.76
ECHDC1-215ENST00000475319 NUBP1P53384 320 aa10.28□□□□□ -0.76
ECHDC1-215ENST00000475319 PLCD3Q8N3E9 789 aa10.27□□□□□ -0.77
ECHDC1-215ENST00000475319 G3V3G9 751 aa10.24□□□□□ -0.77
ECHDC1-215ENST00000475319 DCAF8Q5TAQ9 597 aa10.24□□□□□ -0.77
ECHDC1-215ENST00000475319 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.23□□□□□ -0.772e-6■□□□□ 8.4
ECHDC1-215ENST00000475319 ANKRD13DQ6ZTN6 518 aa10.21□□□□□ -0.78
ECHDC1-215ENST00000475319 HCSTQ9UBK5 93 aa10.18□□□□□ -0.78
ECHDC1-215ENST00000475319 PCDHB8Q9UN66 801 aa10.17□□□□□ -0.78
ECHDC1-215ENST00000475319 KDM2AQ9Y2K7 1162 aa10.17□□□□□ -0.78
ECHDC1-215ENST00000475319 NISCHQ9Y2I1 1504 aa10.16□□□□□ -0.78
ECHDC1-215ENST00000475319 TPRNQ4KMQ1 711 aa10.15□□□□□ -0.78
ECHDC1-215ENST00000475319 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.15□□□□□ -0.78
ECHDC1-215ENST00000475319 BBXQ8WY36 941 aaPredicted RBP10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms