RNA–Protein interactions for RNA: ENST00000474412.1

VPS50-211, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 819 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-211ENST00000474412 FAM212AQ96EL1 285 aa14.98□□□□□ -0.01
VPS50-211ENST00000474412 SP7Q8TDD2 431 aaPredicted RBP14.97□□□□□ -0.01
VPS50-211ENST00000474412 DCAF8Q5TAQ9 597 aa14.93□□□□□ -0.02
VPS50-211ENST00000474412 ZNF579Q8NAF0 562 aaKnown RBP14.93□□□□□ -0.02
VPS50-211ENST00000474412 PHF12Q96QT6 1004 aa14.88□□□□□ -0.03
VPS50-211ENST00000474412 CCDC61Q9Y6R9 512 aa14.87□□□□□ -0.03
VPS50-211ENST00000474412 GSE1Q14687 1217 aa14.86□□□□□ -0.03
VPS50-211ENST00000474412 CIZ1Q9ULV3 898 aaPredicted RBP14.85□□□□□ -0.03
VPS50-211ENST00000474412 GABBR2O75899 941 aa14.8□□□□□ -0.04
VPS50-211ENST00000474412 CLCN6P51797 869 aa14.8□□□□□ -0.04
VPS50-211ENST00000474412 PYGBP11216 843 aa14.74□□□□□ -0.05
VPS50-211ENST00000474412 KIF12Q96FN5 646 aa14.74□□□□□ -0.05
VPS50-211ENST00000474412 RB1CC1Q8TDY2 1594 aa14.71□□□□□ -0.05
VPS50-211ENST00000474412 MAP3K13O43283 966 aa14.7□□□□□ -0.06
VPS50-211ENST00000474412 GALR2O43603 387 aaPredicted RBP14.7□□□□□ -0.06
VPS50-211ENST00000474412 MS4A3Q96HJ5 214 aa14.7□□□□□ -0.06
VPS50-211ENST00000474412 PCDHB13Q9Y5F0 798 aa14.68□□□□□ -0.06
VPS50-211ENST00000474412 UNC13AQ9UPW8 1703 aa14.68□□□□□ -0.06
VPS50-211ENST00000474412 TRIM41Q8WV44 630 aa14.66□□□□□ -0.06
VPS50-211ENST00000474412 SGIP1Q9BQI5 828 aa14.63□□□□□ -0.07
VPS50-211ENST00000474412 NACADO15069 1562 aa14.62□□□□□ -0.07
VPS50-211ENST00000474412 CHRM1P11229 460 aaPredicted RBP14.61□□□□□ -0.07
VPS50-211ENST00000474412 DCBLD2Q96PD2 775 aa14.6□□□□□ -0.07
VPS50-211ENST00000474412 IFNL1Q8IU54 200 aa14.58□□□□□ -0.08
VPS50-211ENST00000474412 ECM2O94769 699 aaPredicted RBP14.56□□□□□ -0.08
VPS50-211ENST00000474412 ZNF467Q7Z7K2 595 aaPredicted RBP14.55□□□□□ -0.08
VPS50-211ENST00000474412 PCDHB8Q9UN66 801 aa14.55□□□□□ -0.08
VPS50-211ENST00000474412 PKD2Q13563 968 aa14.53□□□□□ -0.08
VPS50-211ENST00000474412 TRPC6Q9Y210 931 aa14.52□□□□□ -0.09
VPS50-211ENST00000474412 ZCCHC6Q5VYS8 1495 aaKnown RBP14.5□□□□□ -0.09
VPS50-211ENST00000474412 TIE1P35590 1138 aa14.47□□□□□ -0.09
VPS50-211ENST00000474412 POTEIP0CG38 1075 aa14.45□□□□□ -0.1
VPS50-211ENST00000474412 BMP2KQ9NSY1 1161 aaPredicted RBP14.45□□□□□ -0.1
VPS50-211ENST00000474412 MYO15BQ96JP2 1530 aa14.43□□□□□ -0.1
VPS50-211ENST00000474412 RIOK3O14730 519 aaKnown RBP14.43□□□□□ -0.1
VPS50-211ENST00000474412 ATMINO43313 823 aaPredicted RBP14.42□□□□□ -0.1
VPS50-211ENST00000474412 ASTLQ6HA08 431 aaPredicted RBP14.42□□□□□ -0.1
VPS50-211ENST00000474412 RNF25Q96BH1 459 aaPredicted RBP14.42□□□□□ -0.1
VPS50-211ENST00000474412 TMEM106CQ9BVX2 250 aa14.42□□□□□ -0.1
VPS50-211ENST00000474412 TTLL13PA6NNM8 815 aa14.4□□□□□ -0.1
VPS50-211ENST00000474412 PSEN1P49768 467 aa14.4□□□□□ -0.1
VPS50-211ENST00000474412 PDAP1Q13442 181 aaKnown RBP14.4□□□□□ -0.1
VPS50-211ENST00000474412 DCAF8L2P0C7V8 631 aa14.39□□□□□ -0.11
VPS50-211ENST00000474412 AMER1Q5JTC6 1135 aaPredicted RBP14.39□□□□□ -0.11
VPS50-211ENST00000474412 RGL2O15211 777 aa14.38□□□□□ -0.11
VPS50-211ENST00000474412 ATN1P54259 1190 aaPredicted RBP14.38□□□□□ -0.11
VPS50-211ENST00000474412 BICRAQ9NZM4 1560 aa14.37□□□□□ -0.11
VPS50-211ENST00000474412 VGFO15240 615 aaPredicted RBP14.35□□□□□ -0.11
VPS50-211ENST00000474412 TAOK2Q9UL54 1235 aa14.35□□□□□ -0.11
VPS50-211ENST00000474412 DCAF1Q9Y4B6 1507 aa14.34□□□□□ -0.11
VPS50-211ENST00000474412 PELP1Q8IZL8 1130 aaKnown RBP14.33□□□□□ -0.12
VPS50-211ENST00000474412 TRIM35Q9UPQ4 493 aa14.33□□□□□ -0.12
VPS50-211ENST00000474412 RTN4Q9NQC3 1192 aaKnown RBP14.3□□□□□ -0.12
VPS50-211ENST00000474412 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.29□□□□□ -0.12
VPS50-211ENST00000474412 GOLGA2Q08379 1002 aa14.29□□□□□ -0.12
VPS50-211ENST00000474412 ZFP91Q96JP5 570 aaPredicted RBP14.29□□□□□ -0.12
VPS50-211ENST00000474412 SCRIBQ14160 1630 aa14.29□□□□□ -0.12
VPS50-211ENST00000474412 SLC39A7Q92504 469 aa14.28□□□□□ -0.12
VPS50-211ENST00000474412 METRNQ9UJH8 293 aa14.25□□□□□ -0.13
VPS50-211ENST00000474412 C7P10643 843 aa14.23□□□□□ -0.13
VPS50-211ENST00000474412 CABP2Q9NPB3 220 aa14.23□□□□□ -0.13
VPS50-211ENST00000474412 STK25O00506 426 aa14.21□□□□□ -0.13
VPS50-211ENST00000474412 MKRN3Q13064 507 aaKnown RBP14.21□□□□□ -0.13
VPS50-211ENST00000474412 IER5LQ5T953 404 aa14.2□□□□□ -0.14
VPS50-211ENST00000474412 BCL11BQ9C0K0 894 aaPredicted RBP14.2□□□□□ -0.14
VPS50-211ENST00000474412 STK24Q9Y6E0 443 aa14.19□□□□□ -0.14
VPS50-211ENST00000474412 SEC24BO95487 1268 aa14.17□□□□□ -0.14
VPS50-211ENST00000474412 PLCG2P16885 1265 aa14.12□□□□□ -0.15
VPS50-211ENST00000474412 CHGAP10645 457 aaKnown RBP14.11□□□□□ -0.15
VPS50-211ENST00000474412 EFCAB3Q8N7B9 438 aa14.11□□□□□ -0.15
VPS50-211ENST00000474412 IRX5P78411 483 aaPredicted RBP14.09□□□□□ -0.15
VPS50-211ENST00000474412 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.09□□□□□ -0.15
VPS50-211ENST00000474412 COLQQ9Y215 455 aaPredicted RBP14.09□□□□□ -0.15
VPS50-211ENST00000474412 HS6ST3Q8IZP7 471 aa14.08□□□□□ -0.16
VPS50-211ENST00000474412 OCEL1Q9H607 264 aa14.08□□□□□ -0.16
VPS50-211ENST00000474412 POTEFA5A3E0 1075 aa14.07□□□□□ -0.16
VPS50-211ENST00000474412 LHX8Q68G74 356 aa14.06□□□□□ -0.16
VPS50-211ENST00000474412 SHROOM4Q9ULL8 1493 aa14.03□□□□□ -0.16
VPS50-211ENST00000474412 SOX12O15370 315 aa14.02□□□□□ -0.17
VPS50-211ENST00000474412 POTEB2H3BUK9 544 aa14□□□□□ -0.17
VPS50-211ENST00000474412 PDCD7Q8N8D1 485 aaKnown RBP13.99□□□□□ -0.17
VPS50-211ENST00000474412 PHF8Q9UPP1 1060 aa13.98□□□□□ -0.17
VPS50-211ENST00000474412 CC2D2AQ9P2K1 1620 aa13.97□□□□□ -0.17
VPS50-211ENST00000474412 EIF4G1Q04637 1599 aaKnown RBP13.96□□□□□ -0.18
VPS50-211ENST00000474412 NLRP6P59044 892 aa13.95□□□□□ -0.18
VPS50-211ENST00000474412 ILDR1Q86SU0 546 aaPredicted RBP13.95□□□□□ -0.18
VPS50-211ENST00000474412 MFRPQ9BY79 579 aa13.93□□□□□ -0.18
VPS50-211ENST00000474412 DPY19L2Q6NUT2 758 aa13.91□□□□□ -0.18
VPS50-211ENST00000474412 L3MBTL3Q96JM7 780 aaPredicted RBP13.91□□□□□ -0.18
VPS50-211ENST00000474412 G3V3G9 751 aa13.9□□□□□ -0.18
VPS50-211ENST00000474412 POTEJP0CG39 1038 aa13.9□□□□□ -0.18
VPS50-211ENST00000474412 MAMSTRQ6ZN01 415 aa13.9□□□□□ -0.18
VPS50-211ENST00000474412 SCUBE2Q9NQ36 999 aa13.9□□□□□ -0.18
VPS50-211ENST00000474412 FBXO22Q8NEZ5 403 aa13.89□□□□□ -0.19
VPS50-211ENST00000474412 MS4A4AQ96JQ5 239 aa13.89□□□□□ -0.19
VPS50-211ENST00000474412 DNAJC5Q9H3Z4 198 aa13.89□□□□□ -0.19
VPS50-211ENST00000474412 NKX1-1Q15270 411 aaPredicted RBP13.85□□□□□ -0.19
VPS50-211ENST00000474412 BOLA1Q9Y3E2 137 aa13.84□□□□□ -0.19
VPS50-211ENST00000474412 OTUD5Q96G74 571 aa13.83□□□□□ -0.2
VPS50-211ENST00000474412 C3orf67Q6ZVT6 689 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms