RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 MIER1Q8N108 512 aa7.82□□□□□ -1.16
CCDC88A-209ENST00000456975 CECR2Q9BXF3 1484 aa7.82□□□□□ -1.16
CCDC88A-209ENST00000456975 RANGAP1P46060 587 aaPredicted RBP7.82□□□□□ -1.16
CCDC88A-209ENST00000456975 C14orf37Q86TY3 774 aa7.8□□□□□ -1.16
CCDC88A-209ENST00000456975 NKX1-1Q15270 411 aaPredicted RBP7.78□□□□□ -1.16
CCDC88A-209ENST00000456975 HOMEZQ8IX15 550 aa7.78□□□□□ -1.16
CCDC88A-209ENST00000456975 RNF25Q96BH1 459 aaPredicted RBP7.77□□□□□ -1.17
CCDC88A-209ENST00000456975 HS6ST3Q8IZP7 471 aa7.76□□□□□ -1.17
CCDC88A-209ENST00000456975 ABCB7O75027 752 aa7.75□□□□□ -1.17
CCDC88A-209ENST00000456975 CAPN15O75808 1086 aa7.75□□□□□ -1.17
CCDC88A-209ENST00000456975 PLEKHG5O94827 1062 aa7.74□□□□□ -1.17
CCDC88A-209ENST00000456975 ZNF692Q9BU19 519 aaPredicted RBP7.74□□□□□ -1.17
CCDC88A-209ENST00000456975 STAG3Q9UJ98 1225 aa7.74□□□□□ -1.17
CCDC88A-209ENST00000456975 EIF4G1Q04637 1599 aaKnown RBP7.73□□□□□ -1.17
CCDC88A-209ENST00000456975 SHROOM4Q9ULL8 1493 aa7.73□□□□□ -1.17
CCDC88A-209ENST00000456975 MYO15BQ96JP2 1530 aa7.72□□□□□ -1.17
CCDC88A-209ENST00000456975 GTPBP6O43824 516 aaPredicted RBP7.71□□□□□ -1.17
CCDC88A-209ENST00000456975 SUPT5HO00267 1087 aaKnown RBP7.7□□□□□ -1.18
CCDC88A-209ENST00000456975 FAM9AQ8IZU1 332 aaPredicted RBP7.68□□□□□ -1.18
CCDC88A-209ENST00000456975 ZCCHC6Q5VYS8 1495 aaKnown RBP7.68□□□□□ -1.18
CCDC88A-209ENST00000456975 SCRIBQ14160 1630 aa7.67□□□□□ -1.18
CCDC88A-209ENST00000456975 OSCARQ8IYS5 282 aa7.66□□□□□ -1.18
CCDC88A-209ENST00000456975 DCAF1Q9Y4B6 1507 aa7.64□□□□□ -1.19
CCDC88A-209ENST00000456975 ZBTB12Q9Y330 459 aaPredicted RBP7.63□□□□□ -1.19
CCDC88A-209ENST00000456975 STK25O00506 426 aa7.62□□□□□ -1.19
CCDC88A-209ENST00000456975 BRPF1P55201 1214 aaPredicted RBP7.62□□□□□ -1.19
CCDC88A-209ENST00000456975 SSUH2Q9Y2M2 353 aa7.62□□□□□ -1.19
CCDC88A-209ENST00000456975 LMOD2Q6P5Q4 547 aa7.6□□□□□ -1.19
CCDC88A-209ENST00000456975 RIOK3O14730 519 aaKnown RBP7.59□□□□□ -1.19
CCDC88A-209ENST00000456975 PODXL2Q9NZ53 605 aa7.59□□□□□ -1.19
CCDC88A-209ENST00000456975 CUX2O14529 1486 aa7.58□□□□□ -1.2
CCDC88A-209ENST00000456975 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.58□□□□□ -1.2
CCDC88A-209ENST00000456975 TRIM41Q8WV44 630 aa7.58□□□□□ -1.2
CCDC88A-209ENST00000456975 ZBTB47Q9UFB7 747 aaPredicted RBP7.58□□□□□ -1.2
CCDC88A-209ENST00000456975 KCNV2Q8TDN2 545 aa7.56□□□□□ -1.2
CCDC88A-209ENST00000456975 SPDYE2BA6NHP3 402 aa7.56□□□□□ -1.2
CCDC88A-209ENST00000456975 SPDYE6P0CI01 402 aa7.56□□□□□ -1.2
CCDC88A-209ENST00000456975 SPDYE2Q495Y8 402 aa7.56□□□□□ -1.2
CCDC88A-209ENST00000456975 DCAF8Q5TAQ9 597 aa7.54□□□□□ -1.2
CCDC88A-209ENST00000456975 GSE1Q14687 1217 aa7.53□□□□□ -1.2
CCDC88A-209ENST00000456975 STK24Q9Y6E0 443 aa7.53□□□□□ -1.2
CCDC88A-209ENST00000456975 ERCC6Q03468 1493 aa7.52□□□□□ -1.2
CCDC88A-209ENST00000456975 NUBP1P53384 320 aa7.52□□□□□ -1.2
CCDC88A-209ENST00000456975 NEUROD2Q15784 382 aa7.52□□□□□ -1.2
CCDC88A-209ENST00000456975 CADPS2Q86UW7 1296 aa7.52□□□□□ -1.2
CCDC88A-209ENST00000456975 BCL11BQ9C0K0 894 aaPredicted RBP7.52□□□□□ -1.2
CCDC88A-209ENST00000456975 RNF39Q9H2S5 420 aa7.52□□□□□ -1.2
CCDC88A-209ENST00000456975 UBTFP17480 764 aaKnown RBP7.52□□□□□ -1.21
CCDC88A-209ENST00000456975 P3H3Q8IVL6 736 aa7.51□□□□□ -1.21
CCDC88A-209ENST00000456975 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.5□□□□□ -1.21
CCDC88A-209ENST00000456975 ZFP91Q96JP5 570 aaPredicted RBP7.5□□□□□ -1.21
CCDC88A-209ENST00000456975 SLC24A3Q9HC58 644 aa7.5□□□□□ -1.21
CCDC88A-209ENST00000456975 VGFO15240 615 aaPredicted RBP7.48□□□□□ -1.21
CCDC88A-209ENST00000456975 ZC3H15Q8WU90 426 aaKnown RBP7.47□□□□□ -1.21
CCDC88A-209ENST00000456975 WDR70Q9NW82 654 aa7.46□□□□□ -1.22
CCDC88A-209ENST00000456975 UBE2Q2Q8WVN8 375 aa7.44□□□□□ -1.22
CCDC88A-209ENST00000456975 DSG3P32926 999 aa7.43□□□□□ -1.22
CCDC88A-209ENST00000456975 TRIM26Q12899 539 aaPredicted RBP7.43□□□□□ -1.22
CCDC88A-209ENST00000456975 NPM2Q86SE8 214 aaKnown RBP7.43□□□□□ -1.22
CCDC88A-209ENST00000456975 PYGBP11216 843 aa7.42□□□□□ -1.22
CCDC88A-209ENST00000456975 SEMA3EO15041 775 aa7.41□□□□□ -1.22
CCDC88A-209ENST00000456975 FAM212AQ96EL1 285 aa7.4□□□□□ -1.23
CCDC88A-209ENST00000456975 THOC2Q8NI27 1593 aaKnown RBP7.39□□□□□ -1.23
CCDC88A-209ENST00000456975 PDIA4P13667 645 aaKnown RBP7.39□□□□□ -1.23
CCDC88A-209ENST00000456975 C1QBPQ07021 282 aaKnown RBP7.39□□□□□ -1.23
CCDC88A-209ENST00000456975 RASEFQ8IZ41 740 aa7.39□□□□□ -1.23
CCDC88A-209ENST00000456975 RYDENQ9NUL5 291 aaKnown RBP7.39□□□□□ -1.23
CCDC88A-209ENST00000456975 HRCP23327 699 aa7.37□□□□□ -1.23
CCDC88A-209ENST00000456975 ARID3AQ99856 593 aa7.37□□□□□ -1.23
CCDC88A-209ENST00000456975 SGIP1Q9BQI5 828 aa7.35□□□□□ -1.23
CCDC88A-209ENST00000456975 GPBP1L1Q9HC44 474 aaPredicted RBP7.35□□□□□ -1.23
CCDC88A-209ENST00000456975 NESP48681 1621 aa7.35□□□□□ -1.23
CCDC88A-209ENST00000456975 KIF21AQ7Z4S6 1674 aa7.35□□□□□ -1.23
CCDC88A-209ENST00000456975 SMARCA2P51531 1590 aa7.34□□□□□ -1.23
CCDC88A-209ENST00000456975 MNX1P50219 401 aaPredicted RBP7.34□□□□□ -1.23
CCDC88A-209ENST00000456975 CHRM1P11229 460 aaPredicted RBP7.33□□□□□ -1.24
CCDC88A-209ENST00000456975 IL27Q8NEV9 243 aa7.33□□□□□ -1.24
CCDC88A-209ENST00000456975 ZMYND10O75800 440 aa7.32□□□□□ -1.24
CCDC88A-209ENST00000456975 TESPA1A2RU30 521 aaPredicted RBP7.31□□□□□ -1.24
CCDC88A-209ENST00000456975 ARHGEF1Q92888 912 aaKnown RBP7.31□□□□□ -1.24
CCDC88A-209ENST00000456975 CREBZFQ9NS37 354 aa7.31□□□□□ -1.24
CCDC88A-209ENST00000456975 NCAPD3P42695 1498 aa7.31□□□□□ -1.24
CCDC88A-209ENST00000456975 ZMYND15Q9H091 742 aa7.31□□□□□ -1.24
CCDC88A-209ENST00000456975 HMGXB3Q12766 1538 aa7.3□□□□□ -1.24
CCDC88A-209ENST00000456975 PPP1R37O75864 691 aa7.29□□□□□ -1.24
CCDC88A-209ENST00000456975 E2F4Q16254 413 aa7.29□□□□□ -1.24
CCDC88A-209ENST00000456975 C1orf115Q9H7X2 142 aa7.29□□□□□ -1.24
CCDC88A-209ENST00000456975 PDE4CQ08493 712 aa7.28□□□□□ -1.24
CCDC88A-209ENST00000456975 BAZ1AQ9NRL2 1556 aaPredicted RBP7.28□□□□□ -1.24
CCDC88A-209ENST00000456975 MFRPQ9BY79 579 aa7.28□□□□□ -1.24
CCDC88A-209ENST00000456975 LAMC3Q9Y6N6 1575 aa7.27□□□□□ -1.25
CCDC88A-209ENST00000456975 ATAD2BQ9ULI0 1458 aa7.27□□□□□ -1.25
CCDC88A-209ENST00000456975 LOC105371045A0A1W2PR82 267 aa7.27□□□□□ -1.25
CCDC88A-209ENST00000456975 ARID3CA6NKF2 412 aa7.27□□□□□ -1.25
CCDC88A-209ENST00000456975 CENPBP07199 599 aaPredicted RBP7.27□□□□□ -1.25
CCDC88A-209ENST00000456975 CLEC11AQ9Y240 323 aa7.27□□□□□ -1.25
CCDC88A-209ENST00000456975 PKNOX2Q96KN3 472 aa7.26□□□□□ -1.25
CCDC88A-209ENST00000456975 RSPH6AQ9H0K4 717 aa7.26□□□□□ -1.25
CCDC88A-209ENST00000456975 SMARCA4P51532 1647 aa7.25□□□□□ -1.25
CCDC88A-209ENST00000456975 NEFLP07196 543 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms