RNA–Protein interactions for RNA: ENST00000448572.1

SSBP3-209, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 3

Gene SSBP3, Length 454 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-209ENST00000448572 FAM69CQ0P6D2 419 aa18.19■□□□□ 0.5
SSBP3-209ENST00000448572 ABCC10Q5T3U5 1492 aa18.17■□□□□ 0.5
SSBP3-209ENST00000448572 MAPKBP1O60336 1514 aa18.17■□□□□ 0.5
SSBP3-209ENST00000448572 RUSC2Q8N2Y8 1516 aa18.16■□□□□ 0.5
SSBP3-209ENST00000448572 KIAA0586Q9BVV6 1533 aa18.14■□□□□ 0.49
SSBP3-209ENST00000448572 KIF27Q86VH2 1401 aa18.14■□□□□ 0.49
SSBP3-209ENST00000448572 KIF13AQ9H1H9 1805 aa18.12■□□□□ 0.49
SSBP3-209ENST00000448572 CUL7Q14999 1698 aa18.08■□□□□ 0.48
SSBP3-209ENST00000448572 CARMIL2Q6F5E8 1435 aa18.06■□□□□ 0.48
SSBP3-209ENST00000448572 IGF1RP08069 1367 aa18.05■□□□□ 0.48
SSBP3-209ENST00000448572 DIP2BQ9P265 1576 aa18.05■□□□□ 0.48
SSBP3-209ENST00000448572 PTPRGP23470 1445 aa18.03■□□□□ 0.48
SSBP3-209ENST00000448572 ADCY10Q96PN6 1610 aa18.02■□□□□ 0.48
SSBP3-209ENST00000448572 KDM6BO15054 1643 aa18.01■□□□□ 0.47
SSBP3-209ENST00000448572 TNIKQ9UKE5 1360 aa17.99■□□□□ 0.47
SSBP3-209ENST00000448572 CARMIL1Q5VZK9 1371 aa17.98■□□□□ 0.47
SSBP3-209ENST00000448572 PLB1Q6P1J6 1458 aa17.96■□□□□ 0.47
SSBP3-209ENST00000448572 ABCC2Q92887 1545 aa17.94■□□□□ 0.46
SSBP3-209ENST00000448572 TTBK1Q5TCY1 1321 aaPredicted RBP17.9■□□□□ 0.46
SSBP3-209ENST00000448572 UHRF1BP1LA0JNW5 1464 aa17.89■□□□□ 0.45
SSBP3-209ENST00000448572 IQGAP2Q13576 1575 aa17.89■□□□□ 0.45
SSBP3-209ENST00000448572 ASXL2Q76L83 1435 aa17.88■□□□□ 0.45
SSBP3-209ENST00000448572 UACAQ9BZF9 1416 aa17.87■□□□□ 0.45
SSBP3-209ENST00000448572 GLI2P10070 1586 aa17.87■□□□□ 0.45
SSBP3-209ENST00000448572 KDM4FA0A1W2PPD8 638 aa17.86■□□□□ 0.45
SSBP3-209ENST00000448572 TEX14Q8IWB6 1497 aa17.84■□□□□ 0.45
SSBP3-209ENST00000448572 TSPOAP1O95153 1857 aa17.84■□□□□ 0.45
SSBP3-209ENST00000448572 FAM9AQ8IZU1 332 aaPredicted RBP17.82■□□□□ 0.44
SSBP3-209ENST00000448572 RAPGEF2Q9Y4G8 1499 aa17.81■□□□□ 0.44
SSBP3-209ENST00000448572 KDM5BQ9UGL1 1544 aa17.78■□□□□ 0.44
SSBP3-209ENST00000448572 UGGT2Q9NYU1 1516 aa17.77■□□□□ 0.43
SSBP3-209ENST00000448572 EPRSP07814 1512 aaKnown RBP17.76■□□□□ 0.43
SSBP3-209ENST00000448572 DISP1Q96F81 1524 aa17.76■□□□□ 0.43
SSBP3-209ENST00000448572 GOLGA3Q08378 1498 aa17.73■□□□□ 0.43
SSBP3-209ENST00000448572 ADGRL1O94910 1474 aa17.71■□□□□ 0.43
SSBP3-209ENST00000448572 WDR7Q9Y4E6 1490 aa17.69■□□□□ 0.42
SSBP3-209ENST00000448572 KIAA0556O60303 1618 aa17.69■□□□□ 0.42
SSBP3-209ENST00000448572 MAP3K4Q9Y6R4 1608 aa17.69■□□□□ 0.42
SSBP3-209ENST00000448572 PPRC1Q5VV67 1664 aaKnown RBP17.67■□□□□ 0.42
SSBP3-209ENST00000448572 ZCCHC11Q5TAX3 1644 aaKnown RBP17.67■□□□□ 0.42
SSBP3-209ENST00000448572 CD109Q6YHK3 1445 aa17.63■□□□□ 0.41
SSBP3-209ENST00000448572 COL17A1Q9UMD9 1497 aaPredicted RBP17.62■□□□□ 0.41
SSBP3-209ENST00000448572 MAGI3Q5TCQ9 1506 aa17.62■□□□□ 0.41
SSBP3-209ENST00000448572 ILDR1Q86SU0 546 aaPredicted RBP17.59■□□□□ 0.41
SSBP3-209ENST00000448572 KCNH8Q96L42 1107 aa17.58■□□□□ 0.4
SSBP3-209ENST00000448572 CFAP43Q8NDM7 1665 aa17.58■□□□□ 0.4
SSBP3-209ENST00000448572 PHLDB1Q86UU1 1377 aa17.57■□□□□ 0.4
SSBP3-209ENST00000448572 CTTNBP2Q8WZ74 1663 aa17.56■□□□□ 0.4
SSBP3-209ENST00000448572 ABCA8O94911 1581 aa17.53■□□□□ 0.4
SSBP3-209ENST00000448572 HECW2Q9P2P5 1572 aa17.52■□□□□ 0.39
SSBP3-209ENST00000448572 PRXQ9BXM0 1461 aa17.5■□□□□ 0.39
SSBP3-209ENST00000448572 ARAP3Q8WWN8 1544 aa17.48■□□□□ 0.39
SSBP3-209ENST00000448572 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.42■□□□□ 0.38
SSBP3-209ENST00000448572 HNRNPUL2Q1KMD3 747 aaKnown RBP17.42■□□□□ 0.38
SSBP3-209ENST00000448572 ATP10BO94823 1461 aa17.41■□□□□ 0.38
SSBP3-209ENST00000448572 NEO1Q92859 1461 aa17.41■□□□□ 0.38
SSBP3-209ENST00000448572 P3H3Q8IVL6 736 aa17.38■□□□□ 0.37
SSBP3-209ENST00000448572 CSRNP3Q8WYN3 585 aa17.38■□□□□ 0.37
SSBP3-209ENST00000448572 ABCA9Q8IUA7 1624 aa17.38■□□□□ 0.37
SSBP3-209ENST00000448572 ARID3CA6NKF2 412 aa17.37■□□□□ 0.37
SSBP3-209ENST00000448572 KIF21BO75037 1637 aa17.36■□□□□ 0.37
SSBP3-209ENST00000448572 ARID4BQ4LE39 1312 aaPredicted RBP17.35■□□□□ 0.37
SSBP3-209ENST00000448572 EEA1Q15075 1411 aa17.35■□□□□ 0.37
SSBP3-209ENST00000448572 PLEKHD1A6NEE1 506 aa17.34■□□□□ 0.37
SSBP3-209ENST00000448572 FBXO41Q8TF61 875 aa17.33■□□□□ 0.36
SSBP3-209ENST00000448572 RAPGEF6Q8TEU7 1601 aa17.32■□□□□ 0.36
SSBP3-209ENST00000448572 PTPRMP28827 1452 aa17.32■□□□□ 0.36
SSBP3-209ENST00000448572 SAMD9Q5K651 1589 aa17.32■□□□□ 0.36
SSBP3-209ENST00000448572 RAPGEF3O95398 923 aa17.31■□□□□ 0.36
SSBP3-209ENST00000448572 POGZQ7Z3K3 1410 aa17.3■□□□□ 0.36
SSBP3-209ENST00000448572 DENND4BO75064 1496 aaPredicted RBP17.27■□□□□ 0.36
SSBP3-209ENST00000448572 ADAMTSL3P82987 1691 aa17.26■□□□□ 0.35
SSBP3-209ENST00000448572 CFAP74Q9C0B2 1584 aa17.26■□□□□ 0.35
SSBP3-209ENST00000448572 NUP153P49790 1475 aaKnown RBP17.24■□□□□ 0.35
SSBP3-209ENST00000448572 AKNAQ7Z591 1439 aa17.23■□□□□ 0.35
SSBP3-209ENST00000448572 FANCAO15360 1455 aa17.23■□□□□ 0.35
SSBP3-209ENST00000448572 PCF11O94913 1555 aaKnown RBP17.22■□□□□ 0.35
SSBP3-209ENST00000448572 FHOD3Q2V2M9 1422 aa17.21■□□□□ 0.35
SSBP3-209ENST00000448572 EFCAB5A4FU69 1503 aa17.21■□□□□ 0.35
SSBP3-209ENST00000448572 BCORL1Q5H9F3 1711 aa17.21■□□□□ 0.35
SSBP3-209ENST00000448572 MAGI2Q86UL8 1455 aa17.21■□□□□ 0.35
SSBP3-209ENST00000448572 ARHGEF40Q8TER5 1519 aa17.21■□□□□ 0.34
SSBP3-209ENST00000448572 RANGAP1P46060 587 aaPredicted RBP17.19■□□□□ 0.34
SSBP3-209ENST00000448572 CDK11AQ9UQ88 783 aaPredicted RBP17.19■□□□□ 0.34
SSBP3-209ENST00000448572 FRMPD1Q5SYB0 1578 aa17.17■□□□□ 0.34
SSBP3-209ENST00000448572 MADDQ8WXG6 1647 aa17.17■□□□□ 0.34
SSBP3-209ENST00000448572 LMTK3Q96Q04 1460 aa17.15■□□□□ 0.34
SSBP3-209ENST00000448572 ZMYM4Q5VZL5 1548 aa17.15■□□□□ 0.34
SSBP3-209ENST00000448572 ZFYVE16Q7Z3T8 1539 aa17.14■□□□□ 0.33
SSBP3-209ENST00000448572 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.13■□□□□ 0.33
SSBP3-209ENST00000448572 FMN1Q68DA7 1419 aa17.12■□□□□ 0.33
SSBP3-209ENST00000448572 RICTORQ6R327 1708 aa17.11■□□□□ 0.33
SSBP3-209ENST00000448572 EFCAB2Q5VUJ9 269 aa17.11■□□□□ 0.33
SSBP3-209ENST00000448572 PLCH2O75038 1416 aa17.1■□□□□ 0.33
SSBP3-209ENST00000448572 SCAPERQ9BY12 1400 aa17.09■□□□□ 0.33
SSBP3-209ENST00000448572 RIMS1Q86UR5 1692 aaKnown RBP17.09■□□□□ 0.33
SSBP3-209ENST00000448572 ATP1B4Q9UN42 357 aaPredicted RBP17.07■□□□□ 0.32
SSBP3-209ENST00000448572 DMRT2Q9Y5R5 561 aa17.07■□□□□ 0.32
SSBP3-209ENST00000448572 TTC37Q6PGP7 1564 aa17.06■□□□□ 0.32
SSBP3-209ENST00000448572 CLIP1P30622 1438 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms